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Volumn 15, Issue 1, 2014, Pages

Bioinformatics analysis of transcriptional regulation of circadian genes in rat liver

Author keywords

Circadian regulation; Circadian rhythm; Consensus clustering; Gene expression; Microarray analysis; Promoter analysis; Transcription factor

Indexed keywords

BINDING SITES; BIOINFORMATICS; CLUSTER ANALYSIS; DYNAMICS; GENE EXPRESSION; GENES; MAMMALS; TRANSCRIPTION; TRANSCRIPTION FACTORS;

EID: 84899102480     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-15-83     Document Type: Article
Times cited : (17)

References (79)
  • 1
    • 77950408376 scopus 로고    scopus 로고
    • Circadian rhythm and its role in malignancy
    • 10.1186/1740-3391-8-3, 2853504, 20353609
    • Rana S, Mahmood S. Circadian rhythm and its role in malignancy. J Circadian Rhythms 2010, 8:3. 10.1186/1740-3391-8-3, 2853504, 20353609.
    • (2010) J Circadian Rhythms , vol.8 , pp. 3
    • Rana, S.1    Mahmood, S.2
  • 2
    • 0036893463 scopus 로고    scopus 로고
    • Alteration of intrinsic biological rhythms during interferon treatment and its possible mechanism
    • 10.1124/mol.62.6.1393, 12435807
    • Koyanagi S, Ohdo S. Alteration of intrinsic biological rhythms during interferon treatment and its possible mechanism. Mol Pharmacol 2002, 62(6):1393-1399. 10.1124/mol.62.6.1393, 12435807.
    • (2002) Mol Pharmacol , vol.62 , Issue.6 , pp. 1393-1399
    • Koyanagi, S.1    Ohdo, S.2
  • 3
    • 33750728042 scopus 로고    scopus 로고
    • The rhythms of life: circadian output pathways in Neurospora
    • 10.1177/0748730406294396, 17107934
    • Vitalini MW, de Paula RM, Park WD, Bell-Pedersen D. The rhythms of life: circadian output pathways in Neurospora. J Biol Rhythms 2006, 21(6):432-444. 10.1177/0748730406294396, 17107934.
    • (2006) J Biol Rhythms , vol.21 , Issue.6 , pp. 432-444
    • Vitalini, M.W.1    de Paula, R.M.2    Park, W.D.3    Bell-Pedersen, D.4
  • 4
    • 61649117379 scopus 로고    scopus 로고
    • The stressed host response to infection: the disruptive signals and rhythms of systemic inflammation
    • vii, 10.1016/j.suc.2008.09.004, 2714172, 19281886
    • Lowry SF. The stressed host response to infection: the disruptive signals and rhythms of systemic inflammation. Surg Clin North Am 2009, 89(2):311-326. vii, 10.1016/j.suc.2008.09.004, 2714172, 19281886.
    • (2009) Surg Clin North Am , vol.89 , Issue.2 , pp. 311-326
    • Lowry, S.F.1
  • 5
    • 33645522609 scopus 로고    scopus 로고
    • Disruption of circadian coordination and malignant growth
    • 10.1007/s10552-005-9007-4, 16596304
    • Filipski E, Li XM, Levi F. Disruption of circadian coordination and malignant growth. Cancer Causes Control 2006, 17(4):509-514. 10.1007/s10552-005-9007-4, 16596304.
    • (2006) Cancer Causes Control , vol.17 , Issue.4 , pp. 509-514
    • Filipski, E.1    Li, X.M.2    Levi, F.3
  • 6
    • 18744429390 scopus 로고    scopus 로고
    • Marked 24-h rest/activity rhythms are associated with better quality of life, better response, and longer survival in patients with metastatic colorectal cancer and good performance status
    • Mormont MC, Waterhouse J, Bleuzen P, Giacchetti S, Jami A, Bogdan A, Lellouch J, Misset JL, Touitou Y, Levi F. Marked 24-h rest/activity rhythms are associated with better quality of life, better response, and longer survival in patients with metastatic colorectal cancer and good performance status. Clin Cancer Res 2000, 6(8):3038-3045.
    • (2000) Clin Cancer Res , vol.6 , Issue.8 , pp. 3038-3045
    • Mormont, M.C.1    Waterhouse, J.2    Bleuzen, P.3    Giacchetti, S.4    Jami, A.5    Bogdan, A.6    Lellouch, J.7    Misset, J.L.8    Touitou, Y.9    Levi, F.10
  • 7
    • 4544362674 scopus 로고    scopus 로고
    • Mammalian circadian biology: elucidating genome-wide levels of temporal organization
    • 10.1146/annurev.genom.5.061903.175925, 3770722, 15485355
    • Lowrey PL, Takahashi JS. Mammalian circadian biology: elucidating genome-wide levels of temporal organization. Annu Rev Genomics Hum Genet 2004, 5:407-441. 10.1146/annurev.genom.5.061903.175925, 3770722, 15485355.
    • (2004) Annu Rev Genomics Hum Genet , vol.5 , pp. 407-441
    • Lowrey, P.L.1    Takahashi, J.S.2
  • 8
    • 0037006807 scopus 로고    scopus 로고
    • Circadian programs of transcriptional activation, signaling, and protein turnover revealed by microarray analysis of mammalian cells
    • 10.1016/S0960-9822(02)00765-0, 11937023
    • Duffield GE, Best JD, Meurers BH, Bittner A, Loros JJ, Dunlap JC. Circadian programs of transcriptional activation, signaling, and protein turnover revealed by microarray analysis of mammalian cells. Curr Biol 2002, 12(7):551-557. 10.1016/S0960-9822(02)00765-0, 11937023.
    • (2002) Curr Biol , vol.12 , Issue.7 , pp. 551-557
    • Duffield, G.E.1    Best, J.D.2    Meurers, B.H.3    Bittner, A.4    Loros, J.J.5    Dunlap, J.C.6
  • 11
  • 12
    • 0037006795 scopus 로고    scopus 로고
    • Circadian cycling of the mouse liver transcriptome, as revealed by cDNA microarray, is driven by the suprachiasmatic nucleus
    • 10.1016/S0960-9822(02)00759-5, 11937022
    • Akhtar RA, Reddy AB, Maywood ES, Clayton JD, King VM, Smith AG, Gant TW, Hastings MH, Kyriacou CP. Circadian cycling of the mouse liver transcriptome, as revealed by cDNA microarray, is driven by the suprachiasmatic nucleus. Curr Biol 2002, 12(7):540-550. 10.1016/S0960-9822(02)00759-5, 11937022.
    • (2002) Curr Biol , vol.12 , Issue.7 , pp. 540-550
    • Akhtar, R.A.1    Reddy, A.B.2    Maywood, E.S.3    Clayton, J.D.4    King, V.M.5    Smith, A.G.6    Gant, T.W.7    Hastings, M.H.8    Kyriacou, C.P.9
  • 14
    • 0037007625 scopus 로고    scopus 로고
    • Extensive and divergent circadian gene expression in liver and heart
    • 10.1038/nature744, 11967526
    • Storch KF, Lipan O, Leykin I, Viswanathan N, Davis FC, Wong WH, Weitz CJ. Extensive and divergent circadian gene expression in liver and heart. Nature 2002, 417(6884):78-83. 10.1038/nature744, 11967526.
    • (2002) Nature , vol.417 , Issue.6884 , pp. 78-83
    • Storch, K.F.1    Lipan, O.2    Leykin, I.3    Viswanathan, N.4    Davis, F.C.5    Wong, W.H.6    Weitz, C.J.7
  • 15
    • 16844363738 scopus 로고    scopus 로고
    • RNA profiling in circadian biology
    • Walker JR, Hogenesch JB. RNA profiling in circadian biology. Methods Enzymol 2005, 393:366-376.
    • (2005) Methods Enzymol , vol.393 , pp. 366-376
    • Walker, J.R.1    Hogenesch, J.B.2
  • 16
    • 67651165147 scopus 로고    scopus 로고
    • Unsupervised selection of highly coexpressed and noncoexpressed genes using a consensus clustering approach
    • 10.1089/omi.2008.0074, 19445647
    • Nguyen TT, Nowakowski RS, Androulakis IP. Unsupervised selection of highly coexpressed and noncoexpressed genes using a consensus clustering approach. OMICS 2009, 13(3):219-237. 10.1089/omi.2008.0074, 19445647.
    • (2009) OMICS , vol.13 , Issue.3 , pp. 219-237
    • Nguyen, T.T.1    Nowakowski, R.S.2    Androulakis, I.P.3
  • 17
    • 70349370484 scopus 로고    scopus 로고
    • Recent advances in the computational discovery of transcription factor binding sites
    • Nguyen TT, Androulakis PI. Recent advances in the computational discovery of transcription factor binding sites. Algorithms 2009, 2(1):582-605.
    • (2009) Algorithms , vol.2 , Issue.1 , pp. 582-605
    • Nguyen, T.T.1    Androulakis, P.I.2
  • 18
    • 33746921993 scopus 로고    scopus 로고
    • Circadian clocks go in vitro: purely post-translational oscillators in cyanobacteria
    • 2005, 1681462, 16729054
    • Naef F. Circadian clocks go in vitro: purely post-translational oscillators in cyanobacteria. Mol Syst Biol 2005, 1:0019. 2005, 1681462, 16729054.
    • (2005) Mol Syst Biol , vol.1 , pp. 0019
    • Naef, F.1
  • 19
    • 84890287542 scopus 로고    scopus 로고
    • Phosphorylation of the Cryptochrome 1C-terminal tail regulates circadian period length
    • 10.1074/jbc.M113.509604, 24158435
    • Gao P, Yoo SH, Lee KJ, Rosensweig C, Takahashi JS, Chen BP, Green CB. Phosphorylation of the Cryptochrome 1C-terminal tail regulates circadian period length. J Biol Chem 2013, 288(49):35277-35286. 10.1074/jbc.M113.509604, 24158435.
    • (2013) J Biol Chem , vol.288 , Issue.49 , pp. 35277-35286
    • Gao, P.1    Yoo, S.H.2    Lee, K.J.3    Rosensweig, C.4    Takahashi, J.S.5    Chen, B.P.6    Green, C.B.7
  • 20
    • 84878830334 scopus 로고    scopus 로고
    • Accelerated degradation of perS protein provides insight into light-mediated phase shifting
    • 10.1177/0748730413489797, 23735496
    • Li Y, Rosbash M. Accelerated degradation of perS protein provides insight into light-mediated phase shifting. J Biol Rhythms 2013, 28(3):171-182. 10.1177/0748730413489797, 23735496.
    • (2013) J Biol Rhythms , vol.28 , Issue.3 , pp. 171-182
    • Li, Y.1    Rosbash, M.2
  • 21
    • 0347093600 scopus 로고    scopus 로고
    • Identifying periodically expressed transcripts in microarray time series data
    • 10.1093/bioinformatics/btg364, 14693803
    • Wichert S, Fokianos K, Strimmer K. Identifying periodically expressed transcripts in microarray time series data. Bioinformatics 2004, 20(1):5-20. 10.1093/bioinformatics/btg364, 14693803.
    • (2004) Bioinformatics , vol.20 , Issue.1 , pp. 5-20
    • Wichert, S.1    Fokianos, K.2    Strimmer, K.3
  • 22
    • 53849130669 scopus 로고    scopus 로고
    • Circadian variations in rat liver gene expression: relationships to drug actions
    • 10.1124/jpet.108.140186, 2561907, 18562560
    • Almon RR, Yang E, Lai W, Androulakis IP, DuBois DC, Jusko WJ. Circadian variations in rat liver gene expression: relationships to drug actions. J Pharmacol Exp Ther 2008, 326(3):700-716. 10.1124/jpet.108.140186, 2561907, 18562560.
    • (2008) J Pharmacol Exp Ther , vol.326 , Issue.3 , pp. 700-716
    • Almon, R.R.1    Yang, E.2    Lai, W.3    Androulakis, I.P.4    DuBois, D.C.5    Jusko, W.J.6
  • 24
    • 0034304852 scopus 로고    scopus 로고
    • Multilevel regulation of the circadian clock
    • 10.1038/35036078, 11413490
    • Cermakian N, Sassone-Corsi P. Multilevel regulation of the circadian clock. Nat Rev Mol Cell Biol 2000, 1(1):59-67. 10.1038/35036078, 11413490.
    • (2000) Nat Rev Mol Cell Biol , vol.1 , Issue.1 , pp. 59-67
    • Cermakian, N.1    Sassone-Corsi, P.2
  • 27
    • 75849128795 scopus 로고    scopus 로고
    • A circadian clock in macrophages controls inflammatory immune responses
    • 10.1073/pnas.0906361106, 2795539, 19955445
    • Keller M, Mazuch J, Abraham U, Eom GD, Herzog ED, Volk HD, Kramer A, Maier B. A circadian clock in macrophages controls inflammatory immune responses. Proc Natl Acad Sci U S A 2009, 106(50):21407-21412. 10.1073/pnas.0906361106, 2795539, 19955445.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , Issue.50 , pp. 21407-21412
    • Keller, M.1    Mazuch, J.2    Abraham, U.3    Eom, G.D.4    Herzog, E.D.5    Volk, H.D.6    Kramer, A.7    Maier, B.8
  • 28
    • 0034042294 scopus 로고    scopus 로고
    • Molecular genetics of circadian rhythms in mammals
    • 10.1146/annurev.neuro.23.1.713, 10845079
    • King DP, Takahashi JS. Molecular genetics of circadian rhythms in mammals. Annu Rev Neurosci 2000, 23:713-742. 10.1146/annurev.neuro.23.1.713, 10845079.
    • (2000) Annu Rev Neurosci , vol.23 , pp. 713-742
    • King, D.P.1    Takahashi, J.S.2
  • 29
    • 29144470990 scopus 로고    scopus 로고
    • Topology, tinkering and evolution of the human transcription factor network
    • 10.1111/j.1742-4658.2005.05041.x, 16336278
    • Rodriguez-Caso C, Medina MA, Sole RV. Topology, tinkering and evolution of the human transcription factor network. Febs J 2005, 272(24):6423-6434. 10.1111/j.1742-4658.2005.05041.x, 16336278.
    • (2005) Febs J , vol.272 , Issue.24 , pp. 6423-6434
    • Rodriguez-Caso, C.1    Medina, M.A.2    Sole, R.V.3
  • 30
    • 0345701432 scopus 로고    scopus 로고
    • Cross-talk between hypoxic and circadian pathways: cooperative roles for hypoxia-inducible factor 1alpha and CLOCK in transcriptional activation of the vasopressin gene
    • 10.1016/S1044-7431(02)00019-2, 12691740
    • Ghorbel MT, Coulson JM, Murphy D. Cross-talk between hypoxic and circadian pathways: cooperative roles for hypoxia-inducible factor 1alpha and CLOCK in transcriptional activation of the vasopressin gene. Mol Cell Neurosci 2003, 22(3):396-404. 10.1016/S1044-7431(02)00019-2, 12691740.
    • (2003) Mol Cell Neurosci , vol.22 , Issue.3 , pp. 396-404
    • Ghorbel, M.T.1    Coulson, J.M.2    Murphy, D.3
  • 31
    • 0036468869 scopus 로고    scopus 로고
    • Regulatory context is a crucial part of gene function
    • 10.1016/S0168-9525(02)02591-X, 11818130
    • Fessele S, Maier H, Zischek C, Nelson PJ, Werner T. Regulatory context is a crucial part of gene function. Trends Genet 2002, 18(2):60-63. 10.1016/S0168-9525(02)02591-X, 11818130.
    • (2002) Trends Genet , vol.18 , Issue.2 , pp. 60-63
    • Fessele, S.1    Maier, H.2    Zischek, C.3    Nelson, P.J.4    Werner, T.5
  • 33
    • 3142717535 scopus 로고    scopus 로고
    • Daily oscillations in liver function: diurnal vs circadian rhythmicity
    • 10.1111/j.1478-3231.2004.00917.x, 15189266
    • Davidson AJ, Castanon-Cervantes O, Stephan FK. Daily oscillations in liver function: diurnal vs circadian rhythmicity. Liver Int 2004, 24(3):179-186. 10.1111/j.1478-3231.2004.00917.x, 15189266.
    • (2004) Liver Int , vol.24 , Issue.3 , pp. 179-186
    • Davidson, A.J.1    Castanon-Cervantes, O.2    Stephan, F.K.3
  • 34
    • 84868384122 scopus 로고    scopus 로고
    • The interplay of cis-regulatory elements rules circadian rhythms in mouse liver
    • 10.1371/journal.pone.0046835, 3489864, 23144788
    • Korencic A, Bordyugov G, Kosir R, Rozman D, Golicnik M, Herzel H. The interplay of cis-regulatory elements rules circadian rhythms in mouse liver. PLoS One 2012, 7(11):e46835. 10.1371/journal.pone.0046835, 3489864, 23144788.
    • (2012) PLoS One , vol.7 , Issue.11
    • Korencic, A.1    Bordyugov, G.2    Kosir, R.3    Rozman, D.4    Golicnik, M.5    Herzel, H.6
  • 35
    • 0019821550 scopus 로고
    • Circadian variation of liver metabolites and amino acids in rats adapted to a high protein, carbohydrate-free diet
    • Robinson JL, Foustock S, Chanez M, Bois-Joyeux B, Peret J. Circadian variation of liver metabolites and amino acids in rats adapted to a high protein, carbohydrate-free diet. J Nutr 1981, 111(10):1711-1720.
    • (1981) J Nutr , vol.111 , Issue.10 , pp. 1711-1720
    • Robinson, J.L.1    Foustock, S.2    Chanez, M.3    Bois-Joyeux, B.4    Peret, J.5
  • 36
    • 18044383512 scopus 로고    scopus 로고
    • Partial sleep deprivation compromises gastric mucosal integrity in rats
    • 10.1016/j.lfs.2004.12.027, 15862606
    • Guo JS, Chau JF, Cho CH, Koo MW. Partial sleep deprivation compromises gastric mucosal integrity in rats. Life Sci 2005, 77(2):220-229. 10.1016/j.lfs.2004.12.027, 15862606.
    • (2005) Life Sci , vol.77 , Issue.2 , pp. 220-229
    • Guo, J.S.1    Chau, J.F.2    Cho, C.H.3    Koo, M.W.4
  • 37
    • 78649687209 scopus 로고    scopus 로고
    • Circadian integration of metabolism and energetics
    • 10.1126/science.1195027, 3756146, 21127246
    • Bass J, Takahashi JS. Circadian integration of metabolism and energetics. Science 2010, 330(6009):1349-1354. 10.1126/science.1195027, 3756146, 21127246.
    • (2010) Science , vol.330 , Issue.6009 , pp. 1349-1354
    • Bass, J.1    Takahashi, J.S.2
  • 38
    • 0036598922 scopus 로고    scopus 로고
    • Circadian rhythm of cytokine secretion following thermal injury in mice: implications for burn and trauma research
    • 10.1097/00024382-200206000-00015, 12069192
    • Holzheimer RG, Curley P, Saporoschetz IB, Doherty JM, Mannick JA, Rodrick ML. Circadian rhythm of cytokine secretion following thermal injury in mice: implications for burn and trauma research. Shock 2002, 17(6):527-529. 10.1097/00024382-200206000-00015, 12069192.
    • (2002) Shock , vol.17 , Issue.6 , pp. 527-529
    • Holzheimer, R.G.1    Curley, P.2    Saporoschetz, I.B.3    Doherty, J.M.4    Mannick, J.A.5    Rodrick, M.L.6
  • 39
    • 0034212057 scopus 로고    scopus 로고
    • Daily and circadian variation in survival from ultraviolet radiation in Chlamydomonas reinhardtii
    • 10.1562/0031-8655(2000)071<0758:DACVIS>2.0.CO;2, 10857373
    • Nikaido SS, Johnson CH. Daily and circadian variation in survival from ultraviolet radiation in Chlamydomonas reinhardtii. Photochem Photobiol 2000, 71(6):758-765. 10.1562/0031-8655(2000)071<0758:DACVIS>2.0.CO;2, 10857373.
    • (2000) Photochem Photobiol , vol.71 , Issue.6 , pp. 758-765
    • Nikaido, S.S.1    Johnson, C.H.2
  • 40
    • 78651491409 scopus 로고    scopus 로고
    • Delay in feedback repression by cryptochrome 1 is required for circadian clock function
    • 10.1016/j.cell.2010.12.019, 21236481
    • Ukai-Tadenuma M, Yamada RG, Xu H, Ripperger JA, Liu AC, Ueda HR. Delay in feedback repression by cryptochrome 1 is required for circadian clock function. Cell 2011, 144(2):268-281. 10.1016/j.cell.2010.12.019, 21236481.
    • (2011) Cell , vol.144 , Issue.2 , pp. 268-281
    • Ukai-Tadenuma, M.1    Yamada, R.G.2    Xu, H.3    Ripperger, J.A.4    Liu, A.C.5    Ueda, H.R.6
  • 41
    • 19844377004 scopus 로고    scopus 로고
    • Identification of functional transcription factor binding sites using closely related Saccharomyces species
    • 10.1101/gr.3578205, 1088298, 15837806
    • Doniger SW, Huh J, Fay JC. Identification of functional transcription factor binding sites using closely related Saccharomyces species. Genome Res 2005, 15(5):701-709. 10.1101/gr.3578205, 1088298, 15837806.
    • (2005) Genome Res , vol.15 , Issue.5 , pp. 701-709
    • Doniger, S.W.1    Huh, J.2    Fay, J.C.3
  • 42
    • 0034284481 scopus 로고    scopus 로고
    • Conserved noncoding sequences are reliable guides to regulatory elements
    • 10.1016/S0168-9525(00)02081-3, 10973062
    • Hardison RC. Conserved noncoding sequences are reliable guides to regulatory elements. Trends Genet 2000, 16(9):369-372. 10.1016/S0168-9525(00)02081-3, 10973062.
    • (2000) Trends Genet , vol.16 , Issue.9 , pp. 369-372
    • Hardison, R.C.1
  • 43
    • 77950609541 scopus 로고    scopus 로고
    • Effects of sleep deprivation on measures of the febrile reaction and the recovery of somatovisceral functions and sleep in endotoxemia
    • 10.1007/s11055-010-9268-6, 20339942
    • Lapshina KV, Ekimova IV. Effects of sleep deprivation on measures of the febrile reaction and the recovery of somatovisceral functions and sleep in endotoxemia. Neurosci Behav Physiol 2010, 40(4):381-388. 10.1007/s11055-010-9268-6, 20339942.
    • (2010) Neurosci Behav Physiol , vol.40 , Issue.4 , pp. 381-388
    • Lapshina, K.V.1    Ekimova, I.V.2
  • 44
    • 35948979743 scopus 로고    scopus 로고
    • Cell signaling in oxidative stress-induced liver injury
    • 10.1055/s-2007-991514, 17979074
    • Czaja MJ. Cell signaling in oxidative stress-induced liver injury. Semin Liver Dis 2007, 27(4):378-389. 10.1055/s-2007-991514, 17979074.
    • (2007) Semin Liver Dis , vol.27 , Issue.4 , pp. 378-389
    • Czaja, M.J.1
  • 45
    • 78650769395 scopus 로고    scopus 로고
    • Reactive oxygen and mechanisms of inflammatory liver injury: Present concepts
    • Jaeschke H. Reactive oxygen and mechanisms of inflammatory liver injury: Present concepts. J Gastroenterol Hepatol 2011, 26(Suppl 1):173-179.
    • (2011) J Gastroenterol Hepatol , vol.26 , Issue.SUPPL 1 , pp. 173-179
    • Jaeschke, H.1
  • 46
    • 0023232442 scopus 로고
    • Hypermetabolism, organ failure, and metabolic support
    • Cerra FB. Hypermetabolism, organ failure, and metabolic support. Surgery 1987, 101(1):1-14.
    • (1987) Surgery , vol.101 , Issue.1 , pp. 1-14
    • Cerra, F.B.1
  • 47
    • 40349100318 scopus 로고    scopus 로고
    • Are circadian rhythms the code of hypothalamic-immune communication? insights from natural killer cells
    • 10.1007/s11064-007-9501-z, 17965936
    • Arjona A, Sarkar D. Are circadian rhythms the code of hypothalamic-immune communication? insights from natural killer cells. Neurochem Res 2008, 33(4):708-718. 10.1007/s11064-007-9501-z, 17965936.
    • (2008) Neurochem Res , vol.33 , Issue.4 , pp. 708-718
    • Arjona, A.1    Sarkar, D.2
  • 48
    • 71049155850 scopus 로고    scopus 로고
    • Mst1-FoxO signaling protects Naive T lymphocytes from cellular oxidative stress in mice
    • 10.1371/journal.pone.0008011, 2776980, 19956688
    • Choi J, Oh S, Lee D, Oh HJ, Park JY, Lee SB, Lim DS. Mst1-FoxO signaling protects Naive T lymphocytes from cellular oxidative stress in mice. PLoS One 2009, 4(11):e8011. 10.1371/journal.pone.0008011, 2776980, 19956688.
    • (2009) PLoS One , vol.4 , Issue.11
    • Choi, J.1    Oh, S.2    Lee, D.3    Oh, H.J.4    Park, J.Y.5    Lee, S.B.6    Lim, D.S.7
  • 49
    • 79956305398 scopus 로고    scopus 로고
    • The myeloid transcription factor KLF2 regulates the host response to polymicrobial infection and endotoxic shock
    • 10.1016/j.immuni.2011.04.014, 3103656, 21565532
    • Mahabeleshwar GH, Kawanami D, Sharma N, Takami Y, Zhou G, Shi H, Nayak L, Jeyaraj D, Grealy R, White M. The myeloid transcription factor KLF2 regulates the host response to polymicrobial infection and endotoxic shock. Immunity 2011, 34(5):715-728. 10.1016/j.immuni.2011.04.014, 3103656, 21565532.
    • (2011) Immunity , vol.34 , Issue.5 , pp. 715-728
    • Mahabeleshwar, G.H.1    Kawanami, D.2    Sharma, N.3    Takami, Y.4    Zhou, G.5    Shi, H.6    Nayak, L.7    Jeyaraj, D.8    Grealy, R.9    White, M.10
  • 50
    • 0032437814 scopus 로고    scopus 로고
    • Intrahepatic STAT-3 activation and acute phase gene expression predict outcome after CLP sepsis in the rat
    • Andrejko KM, Chen J, Deutschman CS. Intrahepatic STAT-3 activation and acute phase gene expression predict outcome after CLP sepsis in the rat. Am J Physiol Gastrointest Liver Physiol 1998, 275(6):G1423-G1429.
    • (1998) Am J Physiol Gastrointest Liver Physiol , vol.275 , Issue.6
    • Andrejko, K.M.1    Chen, J.2    Deutschman, C.S.3
  • 51
    • 0037101970 scopus 로고    scopus 로고
    • Function and Regulation of CREB Family Transcription Factors in the Nervous System
    • 10.1016/S0896-6273(02)00828-0, 12194863
    • Lonze BE, Ginty DD. Function and Regulation of CREB Family Transcription Factors in the Nervous System. Neuron 2002, 35(4):605-623. 10.1016/S0896-6273(02)00828-0, 12194863.
    • (2002) Neuron , vol.35 , Issue.4 , pp. 605-623
    • Lonze, B.E.1    Ginty, D.D.2
  • 52
    • 79952261359 scopus 로고    scopus 로고
    • Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver
    • 10.1371/journal.pbio.1000595, 3043000, 21364973
    • Rey G, Cesbron F, Rougemont J, Reinke H, Brunner M, Naef F. Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver. PLoS Biol 2011, 9(2):e1000595. 10.1371/journal.pbio.1000595, 3043000, 21364973.
    • (2011) PLoS Biol , vol.9 , Issue.2
    • Rey, G.1    Cesbron, F.2    Rougemont, J.3    Reinke, H.4    Brunner, M.5    Naef, F.6
  • 53
    • 55449106027 scopus 로고    scopus 로고
    • Analysis of gene regulatory networks in the mammalian circadian rhythm
    • 10.1371/journal.pcbi.1000193, 2543109, 18846204
    • Yan J, Wang H, Liu Y, Shao C. Analysis of gene regulatory networks in the mammalian circadian rhythm. PLoS Comput Biol 2008, 4(10):e1000193. 10.1371/journal.pcbi.1000193, 2543109, 18846204.
    • (2008) PLoS Comput Biol , vol.4 , Issue.10
    • Yan, J.1    Wang, H.2    Liu, Y.3    Shao, C.4
  • 54
    • 33747157406 scopus 로고    scopus 로고
    • Nuclear receptor expression links the circadian clock to metabolism
    • 10.1016/j.cell.2006.06.050, 16923398
    • Yang X, Downes M, Yu RT, Bookout AL, He W, Straume M, Mangelsdorf DJ, Evans RM. Nuclear receptor expression links the circadian clock to metabolism. Cell 2006, 126(4):801-810. 10.1016/j.cell.2006.06.050, 16923398.
    • (2006) Cell , vol.126 , Issue.4 , pp. 801-810
    • Yang, X.1    Downes, M.2    Yu, R.T.3    Bookout, A.L.4    He, W.5    Straume, M.6    Mangelsdorf, D.J.7    Evans, R.M.8
  • 55
    • 84859329911 scopus 로고    scopus 로고
    • Rev-erbalpha and Rev-erbbeta coordinately protect the circadian clock and normal metabolic function
    • 10.1101/gad.186858.112, 3323877, 22474260
    • Bugge A, Feng D, Everett LJ, Briggs ER, Mullican SE, Wang F, Jager J, Lazar MA. Rev-erbalpha and Rev-erbbeta coordinately protect the circadian clock and normal metabolic function. Genes Dev 2012, 26(7):657-667. 10.1101/gad.186858.112, 3323877, 22474260.
    • (2012) Genes Dev , vol.26 , Issue.7 , pp. 657-667
    • Bugge, A.1    Feng, D.2    Everett, L.J.3    Briggs, E.R.4    Mullican, S.E.5    Wang, F.6    Jager, J.7    Lazar, M.A.8
  • 56
    • 0038147081 scopus 로고    scopus 로고
    • The retinoid X receptor and its ligands: versatile regulators of metabolic function, cell differentiation and cell death
    • Ahuja HS, Szanto A, Nagy L, Davies PJ. The retinoid X receptor and its ligands: versatile regulators of metabolic function, cell differentiation and cell death. J Biol Regul Homeost Agents 2003, 17(1):29-45.
    • (2003) J Biol Regul Homeost Agents , vol.17 , Issue.1 , pp. 29-45
    • Ahuja, H.S.1    Szanto, A.2    Nagy, L.3    Davies, P.J.4
  • 57
    • 59349094114 scopus 로고    scopus 로고
    • The aryl hydrocarbon receptor (AhR) pathway as a regulatory pathway for cell adhesion and matrix metabolism
    • 10.1016/j.bcp.2008.09.031, 2699768, 18940186
    • Kung T, Murphy KA, White LA. The aryl hydrocarbon receptor (AhR) pathway as a regulatory pathway for cell adhesion and matrix metabolism. Biochem Pharmacol 2009, 77(4):536-546. 10.1016/j.bcp.2008.09.031, 2699768, 18940186.
    • (2009) Biochem Pharmacol , vol.77 , Issue.4 , pp. 536-546
    • Kung, T.1    Murphy, K.A.2    White, L.A.3
  • 58
    • 34547873915 scopus 로고    scopus 로고
    • TNF-alpha suppresses the expression of clock genes by interfering with E-box-mediated transcription
    • 10.1073/pnas.0701466104, 1937554, 17646651
    • Cavadini G, Petrzilka S, Kohler P, Jud C, Tobler I, Birchler T, Fontana A. TNF-alpha suppresses the expression of clock genes by interfering with E-box-mediated transcription. Proc Natl Acad Sci 2007, 104(31):12843-12848. 10.1073/pnas.0701466104, 1937554, 17646651.
    • (2007) Proc Natl Acad Sci , vol.104 , Issue.31 , pp. 12843-12848
    • Cavadini, G.1    Petrzilka, S.2    Kohler, P.3    Jud, C.4    Tobler, I.5    Birchler, T.6    Fontana, A.7
  • 59
    • 0034070664 scopus 로고    scopus 로고
    • Molecular mechanism and cellular distribution of insect circadian clocks
    • 10.1146/annurev.ento.45.1.769, 10761596
    • Giebultowicz JM. Molecular mechanism and cellular distribution of insect circadian clocks. Annu Rev Entomol 2000, 45(1):769-793. 10.1146/annurev.ento.45.1.769, 10761596.
    • (2000) Annu Rev Entomol , vol.45 , Issue.1 , pp. 769-793
    • Giebultowicz, J.M.1
  • 60
    • 14644435678 scopus 로고    scopus 로고
    • The hypothalamic integrator for circadian rhythms
    • 10.1016/j.tins.2004.12.009, 15749169
    • Saper CB, Lu J, Chou TC, Gooley J. The hypothalamic integrator for circadian rhythms. Trends Neurosci 2005, 28(3):152-157. 10.1016/j.tins.2004.12.009, 15749169.
    • (2005) Trends Neurosci , vol.28 , Issue.3 , pp. 152-157
    • Saper, C.B.1    Lu, J.2    Chou, T.C.3    Gooley, J.4
  • 61
    • 1542718627 scopus 로고    scopus 로고
    • GABAA receptors: building the bridge between subunit mRNAs, their promoters, and cognate transcription factors
    • 10.1016/j.pharmthera.2003.12.002, 15031002
    • Steiger JL, Russek SJ. GABAA receptors: building the bridge between subunit mRNAs, their promoters, and cognate transcription factors. Pharmacol Ther 2004, 101(3):259-281. 10.1016/j.pharmthera.2003.12.002, 15031002.
    • (2004) Pharmacol Ther , vol.101 , Issue.3 , pp. 259-281
    • Steiger, J.L.1    Russek, S.J.2
  • 62
    • 0034730493 scopus 로고    scopus 로고
    • Resetting of circadian time in peripheral tissues by glucocorticoid signaling
    • 10.1126/science.289.5488.2344, 11009419
    • Balsalobre A, Brown SA, Marcacci L, Tronche F, Kellendonk C, Reichardt HM, Schütz G, Schibler U. Resetting of circadian time in peripheral tissues by glucocorticoid signaling. Science 2000, 289(5488):2344-2347. 10.1126/science.289.5488.2344, 11009419.
    • (2000) Science , vol.289 , Issue.5488 , pp. 2344-2347
    • Balsalobre, A.1    Brown, S.A.2    Marcacci, L.3    Tronche, F.4    Kellendonk, C.5    Reichardt, H.M.6    Schütz, G.7    Schibler, U.8
  • 63
    • 49749123862 scopus 로고    scopus 로고
    • Neural networks of several novel neuropeptides involved in feeding regulation
    • 10.1016/j.nut.2008.06.016, 18725082
    • Shioda S, Takenoya F, Yagi M, Wang L, Hori Y, Kageyama H. Neural networks of several novel neuropeptides involved in feeding regulation. Nutrition 2008, 24(9):848-853. 10.1016/j.nut.2008.06.016, 18725082.
    • (2008) Nutrition , vol.24 , Issue.9 , pp. 848-853
    • Shioda, S.1    Takenoya, F.2    Yagi, M.3    Wang, L.4    Hori, Y.5    Kageyama, H.6
  • 64
    • 0032191933 scopus 로고    scopus 로고
    • Cross talk between ERK and PKA is required for Ca2+ stimulation of CREB-dependent transcription and ERK nuclear translocation
    • 10.1016/S0896-6273(00)80602-9, 9808472
    • Impey S, Obrietan K, Wong ST, Poser S, Yano S, Wayman G, Deloulme JC, Chan G, Storm DR. Cross talk between ERK and PKA is required for Ca2+ stimulation of CREB-dependent transcription and ERK nuclear translocation. Neuron 1998, 21(4):869-883. 10.1016/S0896-6273(00)80602-9, 9808472.
    • (1998) Neuron , vol.21 , Issue.4 , pp. 869-883
    • Impey, S.1    Obrietan, K.2    Wong, S.T.3    Poser, S.4    Yano, S.5    Wayman, G.6    Deloulme, J.C.7    Chan, G.8    Storm, D.R.9
  • 65
    • 0027213167 scopus 로고
    • Regulation of CREB phosphorylation in the suprachiasmatic nucleus by light and a circadian clock
    • 10.1126/science.8097062, 8097062
    • Ginty DD, Kornhauser JM, Thompson MA, Bading H, Mayo KE, Takahashi JS, Greenberg ME. Regulation of CREB phosphorylation in the suprachiasmatic nucleus by light and a circadian clock. Science 1993, 260(5105):238-241. 10.1126/science.8097062, 8097062.
    • (1993) Science , vol.260 , Issue.5105 , pp. 238-241
    • Ginty, D.D.1    Kornhauser, J.M.2    Thompson, M.A.3    Bading, H.4    Mayo, K.E.5    Takahashi, J.S.6    Greenberg, M.E.7
  • 66
    • 15244349215 scopus 로고    scopus 로고
    • Intrinsic period and light intensity determine the phase relationship between melatonin and sleep in humans
    • Wright KP, Gronfier C, Duffy JF, Czeisler CA. Intrinsic period and light intensity determine the phase relationship between melatonin and sleep in humans. J Biol Rhythm 2005, 20(2):168-177.
    • (2005) J Biol Rhythm , vol.20 , Issue.2 , pp. 168-177
    • Wright, K.P.1    Gronfier, C.2    Duffy, J.F.3    Czeisler, C.A.4
  • 67
    • 77957960061 scopus 로고    scopus 로고
    • Temperature as a universal resetting Cue for mammalian circadian oscillators
    • 10.1126/science.1195262, 3625727, 20947768
    • Buhr ED, Yoo S-H, Takahashi JS. Temperature as a universal resetting Cue for mammalian circadian oscillators. Science 2010, 330(6002):379-385. 10.1126/science.1195262, 3625727, 20947768.
    • (2010) Science , vol.330 , Issue.6002 , pp. 379-385
    • Buhr, E.D.1    Yoo, S.-H.2    Takahashi, J.S.3
  • 68
    • 84863980890 scopus 로고    scopus 로고
    • Dynamics of short-term gene expression profiling in liver following thermal injury
    • 10.1016/j.jss.2011.09.052, 3319855, 22099593
    • Yang Q, Orman MA, Berthiaume F, Ierapetritou MG, Androulakis IP. Dynamics of short-term gene expression profiling in liver following thermal injury. J Surg Res 2012, 176(2):549-558. 10.1016/j.jss.2011.09.052, 3319855, 22099593.
    • (2012) J Surg Res , vol.176 , Issue.2 , pp. 549-558
    • Yang, Q.1    Orman, M.A.2    Berthiaume, F.3    Ierapetritou, M.G.4    Androulakis, I.P.5
  • 69
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection
    • 10.1073/pnas.98.1.31, 14539, 11134512
    • Li C, Wong WH. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci U S A 2001, 98(1):31-36. 10.1073/pnas.98.1.31, 14539, 11134512.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , Issue.1 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 71
    • 0345822598 scopus 로고    scopus 로고
    • The positive false discovery rate: A Bayesian interpretation and the q-value
    • Storey JD. The positive false discovery rate: A Bayesian interpretation and the q-value. Ann Stat 2003, 31(6):2013-2035.
    • (2003) Ann Stat , vol.31 , Issue.6 , pp. 2013-2035
    • Storey, J.D.1
  • 72
    • 0346243568 scopus 로고    scopus 로고
    • ArrayTrack-supporting toxicogenomic research at the US Food and Drug Administration National Center for Toxicological Research
    • 10.1289/ehp.6497, 1241745, 14630514
    • Tong W, Cao X, Harris S, Sun H, Fang H, Fuscoe J, Harris A, Hong H, Xie Q, Perkins R. ArrayTrack-supporting toxicogenomic research at the US Food and Drug Administration National Center for Toxicological Research. Environ Health Perspect 2003, 111(15):1819-1826. 10.1289/ehp.6497, 1241745, 14630514.
    • (2003) Environ Health Perspect , vol.111 , Issue.15 , pp. 1819-1826
    • Tong, W.1    Cao, X.2    Harris, S.3    Sun, H.4    Fang, H.5    Fuscoe, J.6    Harris, A.7    Hong, H.8    Xie, Q.9    Perkins, R.10
  • 73
    • 84888285697 scopus 로고    scopus 로고
    • Genomatix http://www.genomatix.de.
    • Genomatix
  • 74
    • 79957582849 scopus 로고    scopus 로고
    • Computational identification of transcriptional regulators in human endotoxemia
    • 10.1371/journal.pone.0018889, 3103499, 21637747
    • Nguyen TT, Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. Computational identification of transcriptional regulators in human endotoxemia. PLoS One 2011, 6(5):e18889. 10.1371/journal.pone.0018889, 3103499, 21637747.
    • (2011) PLoS One , vol.6 , Issue.5
    • Nguyen, T.T.1    Foteinou, P.T.2    Calvano, S.E.3    Lowry, S.F.4    Androulakis, I.P.5
  • 76
    • 77957778177 scopus 로고    scopus 로고
    • Comparative analysis of acute and chronic corticosteroid pharmacogenomic effects in rat liver: transcriptional dynamics and regulatory structures
    • Nguyen TT, Almon RR, Dubois DC, Jusko WJ, Androulakis IP. Comparative analysis of acute and chronic corticosteroid pharmacogenomic effects in rat liver: transcriptional dynamics and regulatory structures. BMC Bioinforma 2010, 11:515.
    • (2010) BMC Bioinforma , vol.11 , pp. 515
    • Nguyen, T.T.1    Almon, R.R.2    Dubois, D.C.3    Jusko, W.J.4    Androulakis, I.P.5
  • 77
    • 0032945593 scopus 로고    scopus 로고
    • DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment
    • 10.1093/bioinformatics/15.3.211, 10222408
    • Morgenstern B. DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics 1999, 15(3):211-218. 10.1093/bioinformatics/15.3.211, 10222408.
    • (1999) Bioinformatics , vol.15 , Issue.3 , pp. 211-218
    • Morgenstern, B.1
  • 78
    • 77955921956 scopus 로고    scopus 로고
    • Circadian rhythms in gene expression: Relationship to physiology, disease, drug disposition and drug action
    • 2922481, 20542067
    • Sukumaran S, Almon RR, DuBois DC, Jusko WJ. Circadian rhythms in gene expression: Relationship to physiology, disease, drug disposition and drug action. Adv Drug Deliv Rev 2010, 62(9-10):904-917. 2922481, 20542067.
    • (2010) Adv Drug Deliv Rev , vol.62 , Issue.9-10 , pp. 904-917
    • Sukumaran, S.1    Almon, R.R.2    DuBois, D.C.3    Jusko, W.J.4
  • 79
    • 62849114200 scopus 로고    scopus 로고
    • Regulation of clock-controlled genes in mammals
    • 10.1371/journal.pone.0004882, 2654074, 19287494
    • Bozek K, Relogio A, Kielbasa SM, Heine M, Dame C, Kramer A, Herzel H. Regulation of clock-controlled genes in mammals. PLoS One 2009, 4(3):e4882. 10.1371/journal.pone.0004882, 2654074, 19287494.
    • (2009) PLoS One , vol.4 , Issue.3
    • Bozek, K.1    Relogio, A.2    Kielbasa, S.M.3    Heine, M.4    Dame, C.5    Kramer, A.6    Herzel, H.7


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