Identification of functional transcription factor binding sites using closely related Saccharomyces species

Genome Research

Volumn 15, Issue 5, 2005, Pages 701-709

  Doniger, Scott W ^a   Huh, Juyoung ^a   Fay, Justin C ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR; DNA BINDING PROTEIN; NDT80 PROTEIN, S CEREVISIAE; REPRESSOR PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN; SPACER DNA; UME6 PROTEIN, S CEREVISIAE;

ARTICLE; BINDING SITE; CALCULATION; CONTROLLED STUDY; EVOLUTION; GENE EXPRESSION; GENE IDENTIFICATION; GENE MUTATION; GENE SEQUENCE; GENETIC CONSERVATION; NONHUMAN; PREDICTION; PRIORITY JOURNAL; PROBABILITY; PROTEIN MOTIF; RELIABILITY; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES MIKATAE; SACCHAROMYCES PARADOXUS; STATISTICAL SIGNIFICANCE; BIOLOGICAL MODEL; BIOLOGY; COMPARATIVE STUDY; GENETICS; GENOMICS; METABOLISM; METHODOLOGY; MOLECULAR EVOLUTION; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; SACCHAROMYCES; SEQUENCE ALIGNMENT; SPECIES DIFFERENCE;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

AMINO ACID MOTIFS; BASE SEQUENCE; BINDING SITES; COMPUTATIONAL BIOLOGY; CONSERVED SEQUENCE; DNA, INTERGENIC; DNA-BINDING PROTEINS; EVOLUTION, MOLECULAR; GENE EXPRESSION; GENOMICS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; MUTATION; REPRESSOR PROTEINS; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE ALIGNMENT; SPECIES SPECIFICITY; TRANSCRIPTION FACTORS;

EID: 19844377004     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.3578205     Document Type: Article

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51. http://www.broad.mit.edu/annotation/fungi/comp_yeasts/downloads.html; yeast intergenic alignments used in this article's analysis.
52. http://www.broad.mit.edu/annotation/fungi/comp_yeasts/motiflist.html cis-regulatory motifs used in this article's analysis.