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Volumn 9, Issue 4, 2014, Pages

Identification and Characterization of microRNAs in normal equine tissues by next generation sequencing

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; MICRORNA 100; MICRORNA 101; MICRORNA 106A; MICRORNA 126; MICRORNA 130B; MICRORNA 133A; MICRORNA 141; MICRORNA 181B; MICRORNA 191; MICRORNA 200B; MICRORNA 205; MICRORNA 218; MICRORNA 23B; MICRORNA 29B; MICRORNA 30E; MICRORNA 328; MICRORNA 33A; MICRORNA 342; MICRORNA 343; MICRORNA 34C; MICRORNA 485; MICRORNA 539; MICRORNA 582; MICRORNA 653; MICRORNA 664; MICRORNA 708; MICRORNA 95; MICRORNA 99B; UNCLASSIFIED DRUG; UNINDEXED DRUG;

EID: 84898927278     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0093662     Document Type: Article
Times cited : (25)

References (48)
  • 1
    • 33645321647 scopus 로고    scopus 로고
    • MicroRNAs in cell proliferation, cell death, and tumorigenesis
    • Hwang H, Mendell J (2006) MicroRNAs in cell proliferation, cell death, and tumorigenesis. Br J Cancer 94: 776-780.
    • (2006) Br J Cancer , vol.94 , pp. 776-780
    • Hwang, H.1    Mendell, J.2
  • 2
    • 0038299558 scopus 로고    scopus 로고
    • Role of microRNAs in plant and animal development
    • DOI 10.1126/science.1085242
    • Carrington JC, Ambros V (2003) Role of microRNAs in plant and animal development. Sci Signal 301: 336-338. (Pubitemid 36877060)
    • (2003) Science , vol.301 , Issue.5631 , pp. 336-338
    • Carrington, J.C.1    Ambros, V.2
  • 3
    • 54149095553 scopus 로고    scopus 로고
    • Biological principles of microRNA-mediated regulation: Shared themes amid diversity
    • Flynt AS, Lai EC (2008) Biological principles of microRNA-mediated regulation: shared themes amid diversity. Nat Rev Genet 9: 831-842.
    • (2008) Nat Rev Genet , vol.9 , pp. 831-842
    • Flynt, A.S.1    Lai, E.C.2
  • 4
    • 33749537080 scopus 로고    scopus 로고
    • Principles and effects of microRNA-mediated post-transcriptional gene regulation
    • DOI 10.1038/sj.onc.1209909, PII 1209909
    • Engels B, Hutvagner G (2006) Principles and effects of microRNA-mediated post-transcriptional gene regulation. Oncogene 25: 6163-6169. (Pubitemid 44527846)
    • (2006) Oncogene , vol.25 , Issue.46 , pp. 6163-6169
    • Engels, B.M.1    Hutvagner, G.2
  • 5
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros V (2004) The functions of animal microRNAs. Nature 431: 350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 6
    • 0037009364 scopus 로고    scopus 로고
    • MicroRNA maturation: Stepwise processing and subcellular localization
    • DOI 10.1093/emboj/cdf476
    • Lee Y, Jeon K, Lee J-T, Kim S, Kim VN (2002) MicroRNA maturation: stepwise processing and subcellular localization. The EMBO journal 21: 4663-4670. (Pubitemid 34984353)
    • (2002) EMBO Journal , vol.21 , Issue.17 , pp. 4663-4670
    • Lee, Y.1    Jeon, K.2    Lee, J.-T.3    Kim, S.4    Kim, V.N.5
  • 7
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 8
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • DOI 10.1038/35053110
    • Bernstein E, Caudy AA, Hammond SM, Hannon GJ (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409: 363-366. (Pubitemid 32151243)
    • (2001) Nature , vol.409 , Issue.6818 , pp. 363-366
    • Bernstein, E.1    Caudy, A.A.2    Hammond, S.M.3    Hannon, G.J.4
  • 9
    • 0034673638 scopus 로고    scopus 로고
    • An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells
    • DOI 10.1038/35005107
    • Hammond SM, Bernstein E, Beach D, Hannon GJ (2000) An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells. Nature 404: 293-296. (Pubitemid 30163547)
    • (2000) Nature , vol.404 , Issue.6775 , pp. 293-296
    • Hammond, S.M.1    Bernstein, E.2    Beach, D.3    Hannon, G.J.4
  • 11
    • 35248861297 scopus 로고    scopus 로고
    • Identification, amplification and characterization of miR-17-92 from canine tissue
    • DOI 10.1016/j.gene.2007.08.015, PII S0378111907004325
    • Boggs RM, Moody JA, Long CR, Tsai KL, Murphy KE (2007) Identification, amplification and characterization of miR-17-92 from canine tissue. Gene 404: 25-30. (Pubitemid 47562640)
    • (2007) Gene , vol.404 , Issue.1-2 , pp. 25-30
    • Boggs, R.M.1    Moody, J.A.2    Long, C.R.3    Tsai, K.L.4    Murphy, K.E.5
  • 12
    • 84860716719 scopus 로고    scopus 로고
    • Expression of miR-133 and miR-30 in chronic atrial fibrillation in canines
    • Li H, Li S, Yu B, Liu S (2012) Expression of miR-133 and miR-30 in chronic atrial fibrillation in canines. Molecular medicine reports 5: 1457-1460.
    • (2012) Molecular Medicine Reports , vol.5 , pp. 1457-1460
    • Li, H.1    Li, S.2    Yu, B.3    Liu, S.4
  • 14
    • 79953727874 scopus 로고    scopus 로고
    • MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    • Li G, Li Y, Li X, Ning X, Li M, et al. (2011) MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing. J Cell Biochem 112: 1318-1328.
    • (2011) J Cell Biochem , vol.112 , pp. 1318-1328
    • Li, G.1    Li, Y.2    Li, X.3    Ning, X.4    Li, M.5
  • 15
    • 68049096186 scopus 로고    scopus 로고
    • Profiling microRNA expression in bovine articular cartilage and implications for mechanotransduction
    • Dunn W, DuRaine G, Reddi AH (2009) Profiling microRNA expression in bovine articular cartilage and implications for mechanotransduction. Arthritis Rheum 60: 2333-2339.
    • (2009) Arthritis Rheum , vol.60 , pp. 2333-2339
    • Dunn, W.1    DuRaine, G.2    Reddi, A.H.3
  • 16
    • 33847108451 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    • DOI 10.1016/j.febslet.2007.01.081, PII S0014579307001317
    • Gu Z, Eleswarapu S, Jiang H (2007) Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland. FEBS Lett 581: 981-988. (Pubitemid 46282731)
    • (2007) FEBS Letters , vol.581 , Issue.5 , pp. 981-988
    • Gu, Z.1    Eleswarapu, S.2    Jiang, H.3
  • 17
    • 70449358909 scopus 로고    scopus 로고
    • Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    • Jin W, Grant JR, Stothard P, Moore SS, Guan LL (2009) Characterization of bovine miRNAs by sequencing and bioinformatics analysis. BMC Mol Biol 10: 90.
    • (2009) BMC Mol Biol , vol.10 , pp. 90
    • Jin, W.1    Grant, J.R.2    Stothard, P.3    Moore, S.S.4    Guan, L.L.5
  • 18
    • 67649945833 scopus 로고    scopus 로고
    • In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    • Zhou M, Wang Q, Sun J, Li X, Xu L, et al. (2009) In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach. Genomics 94: 125-131.
    • (2009) Genomics , vol.94 , pp. 125-131
    • Zhou, M.1    Wang, Q.2    Sun, J.3    Li, X.4    Xu, L.5
  • 19
    • 84873653547 scopus 로고    scopus 로고
    • Stallion Sperm Transcriptome Comprises Functionally Coherent Coding and Regulatory RNAs as Revealed by Microarray Analysis and RNA-seq
    • Das PJ, McCarthy F, Vishnoi M, Paria N, Gresham C, et al. (2013) Stallion Sperm Transcriptome Comprises Functionally Coherent Coding and Regulatory RNAs as Revealed by Microarray Analysis and RNA-seq. PLoS One 8: e56535.
    • (2013) PLoS One , vol.8
    • Das, P.J.1    McCarthy, F.2    Vishnoi, M.3    Paria, N.4    Gresham, C.5
  • 20
    • 78249248054 scopus 로고    scopus 로고
    • Muscular microRNA expressions in healthy and myopathic horses suffering from polysaccharide storage myopathy or recurrent exertional rhabdomyolysis
    • Barrey E, Bonnamy B, Barrey E, Mata X, Chaffaux S, et al. (2010) Muscular microRNA expressions in healthy and myopathic horses suffering from polysaccharide storage myopathy or recurrent exertional rhabdomyolysis. Equine Vet J 42: 303-310.
    • (2010) Equine Vet J , vol.42 , pp. 303-310
    • Barrey, E.1    Bonnamy, B.2    Barrey, E.3    Mata, X.4    Chaffaux, S.5
  • 21
    • 79952707191 scopus 로고    scopus 로고
    • Identification and characterization of maize microRNAs involved in the very early stage of seed germination
    • Wang L, Liu H, Li D, Chen H (2011) Identification and characterization of maize microRNAs involved in the very early stage of seed germination. BMC Genomics 12: 154.
    • (2011) BMC Genomics , vol.12 , pp. 154
    • Wang, L.1    Liu, H.2    Li, D.3    Chen, H.4
  • 22
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure J, Ji H (2008) Next-generation DNA sequencing. Nat Biotechnol 26: 1135-1145.
    • (2008) Nat Biotechnol , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 23
    • 64149123778 scopus 로고    scopus 로고
    • Next-generation sequencing: From basic research to diagnostics
    • Voelkerding KV, Dames SA, Durtschi JD (2009) Next-generation sequencing: from basic research to diagnostics. Clin Chem 55: 641-658.
    • (2009) Clin Chem , vol.55 , pp. 641-658
    • Voelkerding, K.V.1    Dames, S.A.2    Durtschi, J.D.3
  • 24
    • 78651293534 scopus 로고    scopus 로고
    • miRBase: Integrating microRNA annotation and deep-sequencing data
    • Kozomara A, Griffiths-Jones S (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 39: D152-D157.
    • (2011) Nucleic Acids Res , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 26
    • 70449379045 scopus 로고    scopus 로고
    • Genome sequence, comparative analysis, and population genetics of the domestic horse
    • Wade C, Giulotto E, Sigurdsson S, Zoli M, Gnerre S, et al. (2009) Genome sequence, comparative analysis, and population genetics of the domestic horse. Science 326: 865-867.
    • (2009) Science , vol.326 , pp. 865-867
    • Wade, C.1    Giulotto, E.2    Sigurdsson, S.3    Zoli, M.4    Gnerre, S.5
  • 27
    • 0037245989 scopus 로고    scopus 로고
    • Online Mendelian Inheritance in Animals (OMIA): A comparative knowledgebase of genetic disorders and other familial traits in non-laboratory animals
    • Nicholas FW (2003) Online Mendelian Inheritance in Animals (OMIA): a comparative knowledgebase of genetic disorders and other familial traits in non-laboratory animals. Nucleic Acids Res 31: 275-277.
    • (2003) Nucleic Acids Res , vol.31 , pp. 275-277
    • Nicholas, F.W.1
  • 28
    • 47049093647 scopus 로고    scopus 로고
    • Potential applications of equine genomics in dissecting diseases and fertility
    • Chowdhary BP, Paria N, Raudsepp T (2008) Potential applications of equine genomics in dissecting diseases and fertility. Anim Reprod Sci 107: 208-218.
    • (2008) Anim Reprod Sci , vol.107 , pp. 208-218
    • Chowdhary, B.P.1    Paria, N.2    Raudsepp, T.3
  • 29
    • 84860534578 scopus 로고    scopus 로고
    • Relationship between cartilage and subchondral bone lesions in repetitive impact trauma-induced equine osteoarthritis
    • Lacourt M, Gao C, Li A, Girard C, Beauchamp G, et al. (2012) Relationship between cartilage and subchondral bone lesions in repetitive impact trauma-induced equine osteoarthritis. Osteoarthritis Cartilage 20: 572-583.
    • (2012) Osteoarthritis Cartilage , vol.20 , pp. 572-583
    • Lacourt, M.1    Gao, C.2    Li, A.3    Girard, C.4    Beauchamp, G.5
  • 30
    • 77955908824 scopus 로고    scopus 로고
    • Progress on horse genome project
    • Yang H, Ma Y, Li B, Dugarjaviin M (2010) Progress on horse genome project. Yi chuan 32: 211-218.
    • (2010) Yi Chuan , vol.32 , pp. 211-218
    • Yang, H.1    Ma, Y.2    Li, B.3    Dugarjaviin, M.4
  • 31
    • 80053920537 scopus 로고    scopus 로고
    • Muscle physiology and nutrition in exercising horses
    • McKenzie E (2011) Muscle physiology and nutrition in exercising horses. Equine Vet J 43: 637-639.
    • (2011) Equine Vet J , vol.43 , pp. 637-639
    • McKenzie, E.1
  • 32
    • 79959262495 scopus 로고    scopus 로고
    • Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    • Wei LQ, Yan LF, Wang T (2011) Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa. Genome Biol 12: R53.
    • (2011) Genome Biol , vol.12
    • Wei, L.Q.1    Yan, L.F.2    Wang, T.3
  • 33
    • 84868574557 scopus 로고    scopus 로고
    • Identification and characterization of microRNA in the dairy goat (Capra hircus) mammary gland by Solexa deep-sequencing technology
    • Ji Z, Wang G, Xie Z, Zhang C, Wang J (2012) Identification and characterization of microRNA in the dairy goat (Capra hircus) mammary gland by Solexa deep-sequencing technology. Mol Biol Rep 39: 9361-9371.
    • (2012) Mol Biol Rep , vol.39 , pp. 9361-9371
    • Ji, Z.1    Wang, G.2    Xie, Z.3    Zhang, C.4    Wang, J.5
  • 34
    • 34347376692 scopus 로고    scopus 로고
    • Characterization of microRNA expression profiles in normal human tissues
    • Liang Y, Ridzon D, Wong L, Chen C (2007) Characterization of microRNA expression profiles in normal human tissues. BMC Genomics 8: 166.
    • (2007) BMC Genomics , vol.8 , pp. 166
    • Liang, Y.1    Ridzon, D.2    Wong, L.3    Chen, C.4
  • 35
    • 69249147045 scopus 로고    scopus 로고
    • Expression profiling of microRNAs by deep sequencing
    • Creighton CJ, Reid JG, Gunaratne PH (2009) Expression profiling of microRNAs by deep sequencing. Brief Bioinform 10: 490-497.
    • (2009) Brief Bioinform , vol.10 , pp. 490-497
    • Creighton, C.J.1    Reid, J.G.2    Gunaratne, P.H.3
  • 36
    • 81155134417 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs from peanut (Arachis hypogaea L.) by high-throughput sequencing
    • Chi X, Yang Q, Chen X, Wang J, Pan L, et al. (2011) Identification and characterization of microRNAs from peanut (Arachis hypogaea L.) by high-throughput sequencing. PLoS One 6: e27530.
    • (2011) PLoS One , vol.6
    • Chi, X.1    Yang, Q.2    Chen, X.3    Wang, J.4    Pan, L.5
  • 37
    • 71049116441 scopus 로고    scopus 로고
    • A conserved gene structure and expression regulation of miR-433 and miR-127 in mammals
    • Song G, Wang L (2009) A conserved gene structure and expression regulation of miR-433 and miR-127 in mammals. PLoS One 4: e7829.
    • (2009) PLoS One , vol.4
    • Song, G.1    Wang, L.2
  • 38
    • 22144456077 scopus 로고    scopus 로고
    • Survival and complication rates in 300 horses undergoing surgical treatment of colic. Part 1: Short-term survival following a single laparotomy
    • Colic
    • Mair T, Smith L (2005) Survival and complication rates in 300 horses undergoing surgical treatment of colic. Part 1: Short-term survival following a single laparotomy. Equine Vet J 37: 296-302. (Pubitemid 40977422)
    • (2005) Equine Veterinary Journal , vol.37 , Issue.4 , pp. 296-302
    • Mair, T.S.1    Smith, L.J.2
  • 40
    • 0026126566 scopus 로고
    • Muscle disorders in the horse: A retrospective study
    • Freestone J, Carlson G (1991) Muscle disorders in the horse: a retrospective study. Equine Vet J 23: 86-90.
    • (1991) Equine Vet J , vol.23 , pp. 86-90
    • Freestone, J.1    Carlson, G.2
  • 41
    • 0030096066 scopus 로고    scopus 로고
    • Clinical and pathological studies in horses with hepatic disease
    • West HJ (1996) Clinical and pathological studies in horses with hepatic disease. Equine Vet J 28: 146-156.
    • (1996) Equine Vet J , vol.28 , pp. 146-156
    • West, H.J.1
  • 42
    • 0029285153 scopus 로고
    • Laparoscopic anatomy of the equine abdomen
    • Galuppo L, Snyder J, Pascoe J (1995) Laparoscopic anatomy of the equine abdomen. Am J Vet Res 56: 518-531.
    • (1995) Am J Vet Res , vol.56 , pp. 518-531
    • Galuppo, L.1    Snyder, J.2    Pascoe, J.3
  • 43
    • 33745248430 scopus 로고    scopus 로고
    • microRNA target predictions in animals
    • Rajewsky N (2006) microRNA target predictions in animals. Nat Genet 38: S8-S13.
    • (2006) Nat Genet , vol.38
    • Rajewsky, N.1
  • 44
    • 77953479619 scopus 로고    scopus 로고
    • Structural basis for 5′-nucleotide base-specific recognition of guide RNA by human AGO2
    • Frank F, Sonenberg N, Nagar B (2010) Structural basis for 5′-nucleotide base-specific recognition of guide RNA by human AGO2. Nature 465: 818-822.
    • (2010) Nature , vol.465 , pp. 818-822
    • Frank, F.1    Sonenberg, N.2    Nagar, B.3
  • 45
    • 84863493254 scopus 로고    scopus 로고
    • Characterization of microRNAs in Taenia saginata of zoonotic significance by Solexa deep sequencing and bioinformatics analysis
    • Ai L, Xu M, Chen M, Zhang Y, Chen S, et al. (2012) Characterization of microRNAs in Taenia saginata of zoonotic significance by Solexa deep sequencing and bioinformatics analysis. Parasitol Res 110: 2373-2378.
    • (2012) Parasitol Res , vol.110 , pp. 2373-2378
    • Ai, L.1    Xu, M.2    Chen, M.3    Zhang, Y.4    Chen, S.5
  • 46
    • 33646830110 scopus 로고    scopus 로고
    • Conservation and divergence of plant microRNA genes
    • DOI 10.1111/j.1365-313X.2006.02697.x
    • Zhang B, Pan X, Cannon CH, Cobb GP, Anderson TA (2006) Conservation and divergence of plant microRNA genes. The Plant Journal 46: 243-259. (Pubitemid 43773564)
    • (2006) Plant Journal , vol.46 , Issue.2 , pp. 243-259
    • Zhang, B.1    Pan, X.2    Cannon, C.H.3    Cobb, G.P.4    Anderson, T.A.5
  • 47
    • 41949102707 scopus 로고    scopus 로고
    • miRiad roles for the miR-17-92 cluster in development and disease
    • Mendell JT (2008) miRiad roles for the miR-17-92 cluster in development and disease. Cell 133: 217-222.
    • (2008) Cell , vol.133 , pp. 217-222
    • Mendell, J.T.1


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