메뉴 건너뛰기




Volumn 22, Issue 5, 2014, Pages 625-632

Identification of potential microRNA-target pairs associated with osteopetrosis by deep sequencing, iTRAQ proteomics and bioinformatics

Author keywords

micorRNA profile; osteopetrosis; protein profile

Indexed keywords

ADENOSINE DIPHOSPHATE RIBOSYLATION FACTOR 1; CALMODULIN; ENDOPLASMIN PRECURSOR; ISOFORM 2 OF CALUMENIN; ISOFORM 3 OF RETICULON 4; MICRORNA; MICRORNA 122; MICRORNA 130B; MICRORNA 148B; MICRORNA 152; MICRORNA 15B; MICRORNA 16; MICRORNA 320A; MICRORNA 424; PROTEIN; UMP CMP KINASE ISOFORM A; UNCLASSIFIED DRUG; UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG B; MESSENGER RNA; PROTEOME;

EID: 84898770919     PISSN: 10184813     EISSN: 14765438     Source Type: Journal    
DOI: 10.1038/ejhg.2013.221     Document Type: Article
Times cited : (30)

References (33)
  • 1
    • 77955902024 scopus 로고    scopus 로고
    • The widespread regulation of microRNA biogenesis, function and decay
    • Krol J, Loedige I, Filipowicz W: The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet 2010; 11: 597-610.
    • (2010) Nat Rev Genet , vol.11 , pp. 597-610
    • Krol, J.1    Loedige, I.2    Filipowicz, W.3
  • 2
    • 82155163802 scopus 로고    scopus 로고
    • MicroRNA biogenesis and regulation of bone remodeling
    • Kapinas K, Delany AM: MicroRNA biogenesis and regulation of bone remodeling. Arthritis Res Ther 2011; 13: 220.
    • (2011) Arthritis Res Ther , vol.13 , pp. 220
    • Kapinas, K.1    Delany, A.M.2
  • 3
    • 26944474402 scopus 로고    scopus 로고
    • Analysis of variation in expression of autosomal dominant osteopetrosis type 2: Searching for modifier genes
    • Chu K, Koller DL, Snyder R et al: Analysis of variation in expression of autosomal dominant osteopetrosis type 2: searching for modifier genes. Bone 2005; 37: 655-661.
    • (2005) Bone , vol.37 , pp. 655-661
    • Chu, K.1    Koller, D.L.2    Snyder, R.3
  • 4
    • 56649084972 scopus 로고    scopus 로고
    • Integrative microRNA and proteomic approaches identify novel osteoarthritis genes and their collaborative metabolic and inflammatory networks
    • Iliopoulos D, Malizos KN, Oikonomou P, Tsezou A: Integrative microRNA and proteomic approaches identify novel osteoarthritis genes and their collaborative metabolic and inflammatory networks. PLoS One 2008; 3: e3740.
    • (2008) PLoS One , vol.3
    • Iliopoulos, D.1    Malizos, K.N.2    Oikonomou, P.3    Tsezou, A.4
  • 5
    • 0037673945 scopus 로고    scopus 로고
    • Osteoclast differentiation and activation
    • Boyle WJ, Simonet WS, Lacey DL: Osteoclast differentiation and activation. Nature 2003; 423: 337-342.
    • (2003) Nature , vol.423 , pp. 337-342
    • Boyle, W.J.1    Simonet, W.S.2    Lacey, D.L.3
  • 6
    • 84880787313 scopus 로고    scopus 로고
    • Overexpression of microRNA-223 in rheumatoid arthritis synovium controls osteoclast differentiation
    • Shibuya H, Nakasa T, Adachi N et al: Overexpression of microRNA-223 in rheumatoid arthritis synovium controls osteoclast differentiation. Mod Rheumatol 2013; 23: 674-685.
    • (2013) Mod Rheumatol , vol.23 , pp. 674-685
    • Shibuya, H.1    Nakasa, T.2    Adachi, N.3
  • 7
    • 84873255493 scopus 로고    scopus 로고
    • Rapid gene identification in a Chinese osteopetrosis family by whole exome sequencing
    • Sui W, Ou M, Liang J et al: Rapid gene identification in a Chinese osteopetrosis family by whole exome sequencing. Gene 2013; 516: 311-315.
    • (2013) Gene , vol.516 , pp. 311-315
    • Sui, W.1    Ou, M.2    Liang, J.3
  • 8
    • 84866366746 scopus 로고    scopus 로고
    • MicroRNA expression profile of peripheral blood mononuclear cells of Klinefelter syndrome
    • Sui W, Ou M, Chen J et al: MicroRNA expression profile of peripheral blood mononuclear cells of Klinefelter syndrome. Exp Ther Med 2012; 4: 825-831.
    • (2012) Exp Ther Med , vol.4 , pp. 825-831
    • Sui, W.1    Ou, M.2    Chen, J.3
  • 9
    • 84862648897 scopus 로고    scopus 로고
    • Damage Associated Molecular Pattern Molecule-Induced microRNAs (DAMPmiRs) in human peripheral blood mononuclear cells
    • Unlu S, Tang S, na Wang E et al: Damage Associated Molecular Pattern Molecule-Induced microRNAs (DAMPmiRs) in human peripheral blood mononuclear cells. PLoS One 2012; 7: e38899.
    • (2012) PLoS One , vol.7
    • Unlu, S.1    Tang, S.2    Wang, E.3
  • 10
    • 84872184763 scopus 로고    scopus 로고
    • Differential proteomic analysis of renal tissue in lupus nephritis using iTRAQ reagent technology
    • Sui W, Tang D, Zou G et al: Differential proteomic analysis of renal tissue in lupus nephritis using iTRAQ reagent technology. Rheumatol Int 2011; 32: 3537-3543.
    • (2011) Rheumatol Int , vol.32 , pp. 3537-3543
    • Sui, W.1    Tang, D.2    Zou, G.3
  • 11
    • 84867869045 scopus 로고    scopus 로고
    • Quantitative iTRAQ LC-MS/MS proteomics reveals metabolic responses to biofuel ethanol in Cyanobacterial Synechocystis sp. PCC 6803
    • Qiao J, Wang J, Chen L et al: Quantitative iTRAQ LC-MS/MS proteomics reveals metabolic responses to biofuel ethanol in Cyanobacterial Synechocystis sp. PCC 6803. J Proteome Res 2012; 11: 5286-5300.
    • (2012) J Proteome Res , vol.11 , pp. 5286-5300
    • Qiao, J.1    Wang, J.2    Chen, L.3
  • 12
    • 74449093467 scopus 로고    scopus 로고
    • Sphingosine kinase 1 regulates the expression of proinflammatory cytokines and nitric oxide in activated microglia
    • Nayak D: Sphingosine kinase 1 regulates the expression of proinflammatory cytokines and nitric oxide in activated microglia. Neuroscience 2010; 166: 132-144.
    • (2010) Neuroscience , vol.166 , pp. 132-144
    • Nayak, D.1
  • 13
    • 78651307694 scopus 로고    scopus 로고
    • StarBase: A database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
    • Yang JH, Li JH, Shao P, Zhou H, Chen YQ, Qu LH: starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. Nucleic Acids Res 2011; 39: D202-D209.
    • (2011) Nucleic Acids Res , vol.39
    • Yang, J.H.1    Li, J.H.2    Shao, P.3    Zhou, H.4    Chen, Y.Q.5    Qu, L.H.6
  • 14
    • 40449104335 scopus 로고    scopus 로고
    • MicroRNA-target pairs in the rat kidney identified by microRNA microarray, proteomic, and bioinformatic analysis
    • Tian Z, Greene AS, Pietrusz JL, Matus IR, Liang M: MicroRNA-target pairs in the rat kidney identified by microRNA microarray, proteomic, and bioinformatic analysis. Genome Res 2008; 18: 404-411.
    • (2008) Genome Res , vol.18 , pp. 404-411
    • Tian, Z.1    Greene, A.S.2    Pietrusz, J.L.3    Matus, I.R.4    Liang, M.5
  • 15
    • 84862776527 scopus 로고    scopus 로고
    • A systematic-analysis of predicted miR-21 targets identifies a signature for lung cancer
    • Gao W, Xu J, Liu L, Shen H, Zeng H, Shu Y: A systematic-analysis of predicted miR-21 targets identifies a signature for lung cancer. Biomed Pharmacother 2012; 66: 21-28.
    • (2012) Biomed Pharmacother , vol.66 , pp. 21-28
    • Gao, W.1    Xu, J.2    Liu, L.3    Shen, H.4    Zeng, H.5    Shu, Y.6
  • 16
    • 80054971110 scopus 로고    scopus 로고
    • Inhibition of miR-33a/b in non-human primates raises plasma HDL and lowers VLDL triglycerides
    • Rayner KJ, Esau CC, Hussain FN et al: Inhibition of miR-33a/b in non-human primates raises plasma HDL and lowers VLDL triglycerides. Nature 2011; 478: 404-407.
    • (2011) Nature , vol.478 , pp. 404-407
    • Rayner, K.J.1    Esau, C.C.2    Hussain, F.N.3
  • 17
    • 84870299410 scopus 로고    scopus 로고
    • Heat shock protein 90B1 plays an oncogenic role and is a target of microRNA-223 in human osteosarcoma
    • Li G, Cai M, Fu D et al: Heat shock protein 90B1 plays an oncogenic role and is a target of microRNA-223 in human osteosarcoma. Cell Physiol Biochem 2012; 30: 1481-1490.
    • (2012) Cell Physiol Biochem , vol.30 , pp. 1481-1490
    • Li, G.1    Cai, M.2    Fu, D.3
  • 18
    • 63049092022 scopus 로고    scopus 로고
    • Identification of miR-z21 targets in breast cancer cells using a quantitative proteomic approach
    • Yang Y, Chaerkady R, Beer MA, Mendell JT, Pandey A: Identification of miR-z21 targets in breast cancer cells using a quantitative proteomic approach. Proteomics 2009; 9: 1374-1384.
    • (2009) Proteomics , vol.9 , pp. 1374-1384
    • Yang, Y.1    Chaerkady, R.2    Beer, M.A.3    Mendell, J.T.4    Pandey, A.5
  • 19
    • 84877949558 scopus 로고    scopus 로고
    • MiR-424/322 regulates vascular smooth muscle cell phenotype and neointimal formation in the rat
    • Merlet E, Atassi F, Motiani RK et al: miR-424/322 regulates vascular smooth muscle cell phenotype and neointimal formation in the rat. Cardiovasc Res 2013; 98: 458-468.
    • (2013) Cardiovasc Res , vol.98 , pp. 458-468
    • Merlet, E.1    Atassi, F.2    Motiani, R.K.3
  • 20
    • 84859003377 scopus 로고    scopus 로고
    • Long-term survival in infantile malignant autosomal recessive osteopetrosis secondary to homozygous p. Arg526Gln mutation in CLCN7
    • Kantaputra PN, Thawanaphong S, Issarangporn W et al: Long-term survival in infantile malignant autosomal recessive osteopetrosis secondary to homozygous p. Arg526Gln mutation in CLCN7. Am J Med Genet A 2012; 158A: 909-916.
    • Am J Med Genet A 2012; 158A , pp. 909-916
    • Kantaputra, P.N.1    Thawanaphong, S.2    Issarangporn, W.3
  • 21
    • 67650169908 scopus 로고    scopus 로고
    • Biological functions of miR-29b contribute to positive regulation of osteoblast differentiation
    • Li Z, Hassan MQ, Jafferji M et al: Biological functions of miR-29b contribute to positive regulation of osteoblast differentiation. J Biol Chem 2009; 284: 15676-15684.
    • (2009) J Biol Chem , vol.284 , pp. 15676-15684
    • Li, Z.1    Hassan, M.Q.2    Jafferji, M.3
  • 22
    • 84863318748 scopus 로고    scopus 로고
    • Comparative proteome analysis of peripheral blood mononuclear cells in systemic lupus erythematosus with iTRAQ quantitative proteomics
    • Wang L, Dai Y, Qi S et al: Comparative proteome analysis of peripheral blood mononuclear cells in systemic lupus erythematosus with iTRAQ quantitative proteomics. Rheumatol Int 2012; 32: 585-593.
    • (2012) Rheumatol Int , vol.32 , pp. 585-593
    • Wang, L.1    Dai, Y.2    Qi, S.3
  • 23
    • 37349108189 scopus 로고    scopus 로고
    • Genetics, pathogenesis and complications of osteopetrosis
    • Del Fattore A, Cappariello A, Teti A: Genetics, pathogenesis and complications of osteopetrosis. Bone 2008; 42: 19-29.
    • (2008) Bone , vol.42 , pp. 19-29
    • Del Fattore, A.1    Cappariello, A.2    Teti, A.3
  • 24
    • 84865268664 scopus 로고    scopus 로고
    • TRAF family member-associated NF-KB activator (TANK) is a negative regulator of osteoclastogenesis and bone formation
    • Maruyama K, Kawagoe T, Kondo T, Akira S, Takeuchi O: TRAF family member-associated NF-KB activator (TANK) is a negative regulator of osteoclastogenesis and bone formation. J Biol Chem 2012; 287: 29114-29124.
    • (2012) J Biol Chem , vol.287 , pp. 29114-29124
    • Maruyama, K.1    Kawagoe, T.2    Kondo, T.3    Akira, S.4    Takeuchi, O.5
  • 25
    • 49549111852 scopus 로고    scopus 로고
    • Proteomics joins the search for microRNA targets
    • Grofihans H, Filipowicz W: Proteomics joins the search for microRNA targets. Cell 2008; 134: 560-562.
    • (2008) Cell , vol.134 , pp. 560-562
    • Grofihans, H.1    Filipowicz, W.2
  • 26
    • 79957558166 scopus 로고    scopus 로고
    • Deep sequencing reveals novel microRNAs and regulation of microRNA expression during cell senescence
    • Dhahbi JM, Atamna H, Boffelli D, Magis W, Spindler SR, Martin DIK: Deep sequencing reveals novel microRNAs and regulation of microRNA expression during cell senescence. PLoS One 2011; 6: e20509.
    • (2011) PLoS One , vol.6
    • Dhahbi, J.M.1    Atamna, H.2    Boffelli, D.3    Magis, W.4    Spindler, S.R.5    Dik, M.6
  • 27
    • 77956304093 scopus 로고    scopus 로고
    • Mass spectrometry in high-throughput proteomics: Ready for the big time
    • Nilsson T, Mann M, Aebersold R, Yates JR, Bairoch A, Bergeron JJM: Mass spectrometry in high-throughput proteomics: ready for the big time. Nat Methods 2010; 7: 681-685.
    • (2010) Nat Methods , vol.7 , pp. 681-685
    • Nilsson, T.1    Mann, M.2    Aebersold, R.3    Yates, J.R.4    Bairoch, A.5    Jjm, B.6
  • 28
    • 9244248121 scopus 로고    scopus 로고
    • Neurotrophin signaling through the p75 receptor is deficient in traf6-/-mice
    • Yeiser EC, Rutkoski NJ, Naito A, Inoue J, Carter BD: Neurotrophin signaling through the p75 receptor is deficient in traf6-/-mice. J Neurosci 2004; 24: 10521-10529.
    • (2004) J Neurosci , vol.24 , pp. 10521-10529
    • Yeiser, E.C.1    Rutkoski, N.J.2    Naito, A.3    Inoue, J.4    Carter, B.D.5
  • 29
    • 79955968751 scopus 로고    scopus 로고
    • Role of Arf 1 in endosomal trafficking of protein-metal complexes and cadmium-metallothionein-1 toxicity in kidney proximal tubule cells
    • Wolff NA, Lee W-K, Thevenod F: Role of Arf 1 in endosomal trafficking of protein-metal complexes and cadmium-metallothionein-1 toxicity in kidney proximal tubule cells. Toxico Lett 2011; 203: 210-218.
    • (2011) Toxico Lett , vol.203 , pp. 210-218
    • Wolff, N.A.1    Lee, W.-K.2    Thevenod, F.3
  • 30
    • 60849096378 scopus 로고    scopus 로고
    • Santo AIE etal: Src-dependent repression of ARF6 is required to maintain podosome-rich sealing zones in bone-digesting osteoclasts
    • Heckel T, Czupalla C, Santo AIE etal: Src-dependent repression of ARF6 is required to maintain podosome-rich sealing zones in bone-digesting osteoclasts. Proc Natl Acad Sci 2009; 106: 1451-1456.
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 1451-1456
    • Heckel, T.1    Czupalla, C.2
  • 31
    • 33646184680 scopus 로고    scopus 로고
    • ARF proteins: Roles in membrane traffic and beyond
    • D'Souza-Schorey C, Chavrier P: ARF proteins: roles in membrane traffic and beyond. Nat Rev Mol Cell Biol 2006; 7: 347-358.
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 347-358
    • D'Souza-Schorey, C.1    Chavrier, P.2
  • 32
    • 0035947648 scopus 로고    scopus 로고
    • Bourgoin S etal: Intra-endosomal pH-sensitive recruitment of the Arf-nucleotide exchange factor ARNO and Arf6 from cytoplasm to proximal tubule endosomes
    • Maranda B, Brown D, Bourgoin S etal: Intra-endosomal pH-sensitive recruitment of the Arf-nucleotide exchange factor ARNO and Arf6 from cytoplasm to proximal tubule endosomes. J Biol Chem 2001; 276: 18540-18550.
    • (2001) J Biol Chem , vol.276 , pp. 18540-18550
    • Maranda, B.1    Brown, D.2
  • 33
    • 84861729027 scopus 로고    scopus 로고
    • Use of target protector morpholinos to analyze the physiological roles of specific miRNA-mRNA pairs in vivo
    • Staton AA, Giraldez AJ: Use of target protector morpholinos to analyze the physiological roles of specific miRNA-mRNA pairs in vivo. Nat Protocols 2011; 6: 2035-2049.
    • (2011) Nat Protocols , vol.6 , pp. 2035-2049
    • Staton, A.A.1    Giraldez, A.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.