Quantitative proteomics by SWATH-MS reveals altered expression of nucleic acid binding and regulatory proteins in HIV-1-infected macrophages

Journal of Proteome Research

Volumn 13, Issue 4, 2014, Pages 2109-2119

  Haverland, Nicole A ^a   Fox, Howard S ^a   Ciborowski, Pawel ^a  

^a UNIVERSITY OF NEBRASKA MEDICAL CENTER   (United States)

Author keywords

DHX15; HDAC; HIV; macrophage; MDM; NCOR; spliceosome; SWATH; YBOX1; z test

Indexed keywords

NUCLEIC ACID BINDING PROTEIN; NUCLEIC ACID REGULATORY PROTEIN; REGULATOR PROTEIN; UNCLASSIFIED DRUG; PROTEOME; RNA BINDING PROTEIN; TRANSCRIPTION FACTOR;

AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; CONTROLLED STUDY; ELECTROSPRAY MASS SPECTROMETRY; HUMAN; HUMAN CELL; HUMAN CELL CULTURE; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 1 INFECTION; HUMAN IMMUNODEFICIENCY VIRUS INFECTED PATIENT; IMMUNE RESPONSE; IMMUNOCYTOCHEMISTRY; MACROPHAGE; MASS SPECTROMETRY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN PROCESSING; PROTEIN PROTEIN INTERACTION; PROTEIN RNA BINDING; PROTEOMICS; REFERENCE DATABASE; REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; RNA PROCESSING; SEQUENTIAL WINDOWED DATA INDEPENDENT ACQUISITION OF THE TOTAL HIGH RESOLUTION MASS SPECTROMETRY; SPLICEOSOME; TANDEM MASS SPECTROMETRY; TRANSCRIPTION REGULATION; UNINDEXED SEQUENCE; VIRUS REPLICATION; CELL CULTURE; HOST PATHOGEN INTERACTION; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; METABOLISM; PHYSIOLOGY; PROCEDURES; VIROLOGY;

CELLS, CULTURED; HIV INFECTIONS; HOST-PATHOGEN INTERACTIONS; HUMANS; MACROPHAGES; MASS SPECTROMETRY; PROTEIN INTERACTION MAPS; PROTEOME; PROTEOMICS; RNA-BINDING PROTEINS; TRANSCRIPTION FACTORS;

EID: 84898732425     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr4012602     Document Type: Article

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