-
1
-
-
79954414897
-
Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network
-
doi: 10.1016/j.cell.2011.03.003
-
Ang YS, Tsai SY, Lee DF, Monk J, Su J, Ratnakumar K, Ding J, Ge Y, Darr H, Chang B, Wang J, Rendl M, Bernstein E, Schaniel C, Lemischka IR. 2011. Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network. Cell 145:183-197. doi: 10.1016/j.cell.2011.03.003.
-
(2011)
Cell
, vol.145
, pp. 183-197
-
-
Ang, Y.S.1
Tsai, S.Y.2
Lee, D.F.3
Monk, J.4
Su, J.5
Ratnakumar, K.6
Ding, J.7
Ge, Y.8
Darr, H.9
Chang, B.10
Wang, J.11
Rendl, M.12
Bernstein, E.13
Schaniel, C.14
Lemischka, I.R.15
-
2
-
-
78651240842
-
Structural and biochemical insights into MLL1 core complex assembly
-
doi: 10.1016/j.str.2010.09.022
-
Avdic V, Zhang P, Lanouette S, Groulx A, Tremblay V, Brunzelle J, Couture JF. 2011. Structural and biochemical insights into MLL1 core complex assembly. Structure 19:101-108. doi: 10.1016/j.str.2010.09.022.
-
(2011)
Structure
, vol.19
, pp. 101-108
-
-
Avdic, V.1
Zhang, P.2
Lanouette, S.3
Groulx, A.4
Tremblay, V.5
Brunzelle, J.6
Couture, J.F.7
-
3
-
-
80052972698
-
The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin
-
doi: 10.1016/j.molcel.2011.08.019
-
Bertani S, Sauer S, Bolotin E, Sauer F. 2011. The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin. Molecular Cell 43:1040-1046. doi: 10.1016/j.molcel.2011.08.019.
-
(2011)
Molecular Cell
, vol.43
, pp. 1040-1046
-
-
Bertani, S.1
Sauer, S.2
Bolotin, E.3
Sauer, F.4
-
4
-
-
78649509903
-
An Ash2L/RbBP5 heterodimer stimulates the MLL1 methyltransferase activity through coordinated substrate interactions with the MLL1 SET domain
-
doi: 10.1371/journal.pone.0014102
-
Cao F, Chen Y, Cierpicki T, Liu Y, Basrur V, Lei M, Dou Y. 2010. An Ash2L/RbBP5 heterodimer stimulates the MLL1 methyltransferase activity through coordinated substrate interactions with the MLL1 SET domain. PLOS ONE 5:e14102. doi: 10.1371/journal.pone.0014102.
-
(2010)
PLOS ONE
, vol.5
-
-
Cao, F.1
Chen, Y.2
Cierpicki, T.3
Liu, Y.4
Basrur, V.5
Lei, M.6
Dou, Y.7
-
5
-
-
84859211025
-
Combined RNAi and localization for functionally dissecting long noncoding RNAs
-
doi: 10.1038/nmeth.1894
-
Chakraborty D, Kappei D, Theis M, Nitzsche A, Ding L, Paszkowski-Rogacz M, Surendranath V, Berger N, Schulz H, Saar K, Hubner N, Buchholz F. 2012. Combined RNAi and localization for functionally dissecting long noncoding RNAs. Nature Methods 9:360-362. doi: 10.1038/nmeth.1894.
-
(2012)
Nature Methods
, vol.9
, pp. 360-362
-
-
Chakraborty, D.1
Kappei, D.2
Theis, M.3
Nitzsche, A.4
Ding, L.5
Paszkowski-Rogacz, M.6
Surendranath, V.7
Berger, N.8
Schulz, H.9
Saar, K.10
Hubner, N.11
Buchholz, F.12
-
6
-
-
80054756754
-
Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions
-
doi: 10.1016/j.molcel.2011.08.027
-
Chu C, Qu K, Zhong FL, Artandi SE, Chang HY. 2011. Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. Molecular Cell 44:667-678. doi: 10.1016/j.molcel.2011.08.027.
-
(2011)
Molecular Cell
, vol.44
, pp. 667-678
-
-
Chu, C.1
Qu, K.2
Zhong, F.L.3
Artandi, S.E.4
Chang, H.Y.5
-
8
-
-
77952996319
-
Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones
-
doi: 10.1126/science.1186777
-
Deal RB, Henikoff JG, Henikoff S. 2010. Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones. Science 328:1161-1164. doi: 10.1126/science.1186777.
-
(2010)
Science
, vol.328
, pp. 1161-1164
-
-
Deal, R.B.1
Henikoff, J.G.2
Henikoff, S.3
-
9
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
doi: 10.1101/gr.132159.111
-
Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, Carninci P, Brown JB, Lipovich L, Gonzalez JM, Thomas M, Davis CA, Shiekhattar R, Gingeras TR, Hubbard TJ, Notredame C, Harrow J, Guigó R. 2012. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Research 22:1775-1789. doi: 10.1101/gr.132159.111.
-
(2012)
Genome Research
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
Guernec, G.7
Martin, D.8
Merkel, A.9
Knowles, D.G.10
Lagarde, J.11
Veeravalli, L.12
Ruan, X.13
Ruan, Y.14
Lassmann, T.15
Carninci, P.16
Brown, J.B.17
Lipovich, L.18
Gonzalez, J.M.19
Thomas, M.20
Davis, C.A.21
Shiekhattar, R.22
Gingeras, T.R.23
Hubbard, T.J.24
Notredame, C.25
Harrow, J.26
Guigó, R.27
more..
-
10
-
-
84888057006
-
DNMT1-interacting RNAs block gene-specific DNA methylation
-
doi: 10.1038/nature12598
-
Di Ruscio A, Ebralidze AK, Benoukraf T, Amabile G, Goff LA, Terragni J, Figueroa ME, De Figueiredo Pontes LL, Alberich-Jorda M, Zhang P, Wu M, D'Alò F, Melnick A, Leone G, Ebralidze KK, Pradhan S, Rinn JL, Tenen DG. 2013. DNMT1-interacting RNAs block gene-specific DNA methylation. Nature 503:371-376. doi: 10.1038/nature12598.
-
(2013)
Nature
, vol.503
, pp. 371-376
-
-
Di Ruscio, A.1
Ebralidze, A.K.2
Benoukraf, T.3
Amabile, G.4
Goff, L.A.5
Terragni, J.6
Figueroa, M.E.7
De Figueiredo Pontes, L.L.8
Alberich-Jorda, M.9
Zhang, P.10
Wu, M.11
D'Alò, F.12
Melnick, A.13
Leone, G.14
Ebralidze, K.K.15
Pradhan, S.16
Rinn, J.L.17
Tenen, D.G.18
-
11
-
-
0021100690
-
Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
-
doi: 10.1093/nar/11.5.1475
-
Dignam JD, Lebovitz RM, Roeder RG. 1983. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Research 11:1475-1489. doi: 10.1093/nar/11.5.1475.
-
(1983)
Nucleic Acids Research
, vol.11
, pp. 1475-1489
-
-
Dignam, J.D.1
Lebovitz, R.M.2
Roeder, R.G.3
-
12
-
-
33947137710
-
Dynamics of replication-independent histone turnover in budding yeast
-
doi: 10.1126/science.1134053
-
Dion MF, Kaplan T, Kim M, Buratowski S, Friedman N, Rando OJ. 2007. Dynamics of replication-independent histone turnover in budding yeast. Science 315:1405-1408. doi: 10.1126/science.1134053.
-
(2007)
Science
, vol.315
, pp. 1405-1408
-
-
Dion, M.F.1
Kaplan, T.2
Kim, M.3
Buratowski, S.4
Friedman, N.5
Rando, O.J.6
-
13
-
-
53549094681
-
Cathepsin L proteolytically processes histone H3 during mouse embryonic stem cell differentiation
-
doi: 10.1016/j.cell.2008.09.055
-
Duncan EM, Muratore-Schroeder TL, Cook RG, Garcia BA, Shabanowitz J, Hunt DF, Allis CD. 2008. Cathepsin L proteolytically processes histone H3 during mouse embryonic stem cell differentiation. Cell 135:284-294. doi: 10.1016/j.cell.2008.09.055.
-
(2008)
Cell
, vol.135
, pp. 284-294
-
-
Duncan, E.M.1
Muratore-Schroeder, T.L.2
Cook, R.G.3
Garcia, B.A.4
Shabanowitz, J.5
Hunt, D.F.6
Allis, C.D.7
-
14
-
-
84874025014
-
The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-γ locus
-
doi: 10.1016/j.cell.2013.01.015
-
Gomez JA, Wapinski OL, Yang YW, Bureau JF, Gopinath S, Monack DM, Chang HY, Brahic M, Kirkegaard K. 2013. The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-γ locus. Cell 152:743-754. doi: 10.1016/j.cell.2013.01.015.
-
(2013)
Cell
, vol.152
, pp. 743-754
-
-
Gomez, J.A.1
Wapinski, O.L.2
Yang, Y.W.3
Bureau, J.F.4
Gopinath, S.5
Monack, D.M.6
Chang, H.Y.7
Brahic, M.8
Kirkegaard, K.9
-
15
-
-
79951495822
-
lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements
-
doi: 10.1038/nature09701
-
Gong C, Maquat LE. 2011. lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements. Nature 470:284-288. doi: 10.1038/nature09701.
-
(2011)
Nature
, vol.470
, pp. 284-288
-
-
Gong, C.1
Maquat, L.E.2
-
16
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
doi: 10.1038/nature08975
-
Gupta RA, Shah N, Wang KC, Kim J, Horlings HM, Wong DJ, Tsai MC, Hung T, Argani P, Rinn JL, Wang Y, Brzoska P, Kong B, Li R, West RB, van de Vijver MJ, Sukumar S, Chang HY. 2010. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 464:1071-1076. doi: 10.1038/nature08975.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
Tsai, M.C.7
Hung, T.8
Argani, P.9
Rinn, J.L.10
Wang, Y.11
Brzoska, P.12
Kong, B.13
Li, R.14
West, R.B.15
van de Vijver, M.J.16
Sukumar, S.17
Chang, H.Y.18
-
17
-
-
80052869283
-
lincRNAs act in the circuitry controlling pluripotency and differentiation
-
doi: 10.1038/nature10398
-
Guttman M, Donaghey J, Carey BW, Garber M, Grenier JK, Munson G, Young G, Lucas AB, Ach R, Bruhn L, Yang X, Amit I, Meissner A, Regev A, Rinn JL, Root DE, Lander ES. 2011. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 477:295-300. doi: 10.1038/nature10398.
-
(2011)
Nature
, vol.477
, pp. 295-300
-
-
Guttman, M.1
Donaghey, J.2
Carey, B.W.3
Garber, M.4
Grenier, J.K.5
Munson, G.6
Young, G.7
Lucas, A.B.8
Ach, R.9
Bruhn, L.10
Yang, X.11
Amit, I.12
Meissner, A.13
Regev, A.14
Rinn, J.L.15
Root, D.E.16
Lander, E.S.17
-
18
-
-
77953812338
-
Molecular mechanism of MLL PHD3 and RNA recognition by the Cyp33 RRM domain
-
doi: 10.1016/j.jmb.2010.04.067
-
Hom RA, Chang PY, Roy S, Musselman CA, Glass KC, Selezneva AI, Gozani O, Ismagilov RF, Cleary ML, Kutateladze TG. 2010. Molecular mechanism of MLL PHD3 and RNA recognition by the Cyp33 RRM domain. Journal of Molecular Biology 400:145-154. doi: 10.1016/j.jmb.2010.04.067.
-
(2010)
Journal of Molecular Biology
, vol.400
, pp. 145-154
-
-
Hom, R.A.1
Chang, P.Y.2
Roy, S.3
Musselman, C.A.4
Glass, K.C.5
Selezneva, A.I.6
Gozani, O.7
Ismagilov, R.F.8
Cleary, M.L.9
Kutateladze, T.G.10
-
19
-
-
79959756263
-
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters
-
doi: 10.1038/ng.848
-
Hung T, Wang Y, Lin MF, Koegel AK, Kotake Y, Grant GD, Horlings HM, Shah N, Umbricht C, Wang P, Wang Y, Kong B, Langerød A, Børresen-Dale AL, Kim SK, van de Vijver M, Sukumar S, Whitfield ML, Kellis M, Xiong Y, Wong DJ, Chang HY. 2011. Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters. Nature Genetics 43:621-629. doi: 10.1038/ng.848.
-
(2011)
Nature Genetics
, vol.43
, pp. 621-629
-
-
Hung, T.1
Wang, Y.2
Lin, M.F.3
Koegel, A.K.4
Kotake, Y.5
Grant, G.D.6
Horlings, H.M.7
Shah, N.8
Umbricht, C.9
Wang, P.10
Wang, Y.11
Kong, B.12
Langerød, A.13
Børresen-Dale, A.L.14
Kim, S.K.15
van de Vijver, M.16
Sukumar, S.17
Whitfield, M.L.18
Kellis, M.19
Xiong, Y.20
Wong, D.J.21
Chang, H.Y.22
more..
-
20
-
-
33746773659
-
Dissecting self-renewal in stem cells with RNA interference
-
doi: 10.1038/nature04915
-
Ivanova N, Dobrin R, Lu R, Kotenko I, Levorse J, DeCoste C, Schafer X, Lun Y, Lemischka IR. 2006. Dissecting self-renewal in stem cells with RNA interference. Nature 442:533-538. doi: 10.1038/nature04915.
-
(2006)
Nature
, vol.442
, pp. 533-538
-
-
Ivanova, N.1
Dobrin, R.2
Lu, R.3
Kotenko, I.4
Levorse, J.5
DeCoste, C.6
Schafer, X.7
Lun, Y.8
Lemischka, I.R.9
-
21
-
-
79951711112
-
Role for Dpy-30 in ES cell-fate specification by regulation of H3K4 methylation within bivalent domains
-
doi: 10.1016/j.cell.2011.01.020
-
Jiang H, Shukla A, Wang X, Chen WY, Bernstein BE, Roeder RG. 2011. Role for Dpy-30 in ES cell-fate specification by regulation of H3K4 methylation within bivalent domains. Cell 144:513-525. doi: 10.1016/j.cell.2011.01.020.
-
(2011)
Cell
, vol.144
, pp. 513-525
-
-
Jiang, H.1
Shukla, A.2
Wang, X.3
Chen, W.Y.4
Bernstein, B.E.5
Roeder, R.G.6
-
22
-
-
84887460647
-
PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells
-
doi: 10.1038/nsmb.2700
-
Kaneko S, Son J, Shen SS, Reinberg D, Bonasio R. 2013. PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells. Nature Structural & Molecular Biology 20:1258-1264. doi: 10.1038/nsmb.2700.
-
(2013)
Nature Structural & Molecular Biology
, vol.20
, pp. 1258-1264
-
-
Kaneko, S.1
Son, J.2
Shen, S.S.3
Reinberg, D.4
Bonasio, R.5
-
23
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
doi: 10.1073/pnas.0904715106
-
Khalil AM, Guttman M, Huarte M, Garber M, Raj A, Rivea Morales D, Thomas K, Presser A, Bernstein BE, van Oudenaarden A, Regev A, Lander ES, Rinn JL. 2009. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proceedings of the National Academy of Sciences of the United States of America 106:11667-11672. doi: 10.1073/pnas.0904715106.
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Rivea Morales, D.6
Thomas, K.7
Presser, A.8
Bernstein, B.E.9
van Oudenaarden, A.10
Regev, A.11
Lander, E.S.12
Rinn, J.L.13
-
24
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
doi: 10.1038/nature09033
-
Kim TK, Hemberg M, Gray JM, Costa AM, Bear DM, Wu J, Harmin DA, Laptewicz M, Barbara-Haley K, Kuersten S, Markenscoff-Papadimitriou E, Kuhl D, Bito H, Worley PF, Kreiman G, Greenberg ME. 2010. Widespread transcription at neuronal activity-regulated enhancers. Nature 465:182-187. doi: 10.1038/nature09033.
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
Hemberg, M.2
Gray, J.M.3
Costa, A.M.4
Bear, D.M.5
Wu, J.6
Harmin, D.A.7
Laptewicz, M.8
Barbara-Haley, K.9
Kuersten, S.10
Markenscoff-Papadimitriou, E.11
Kuhl, D.12
Bito, H.13
Worley, P.F.14
Kreiman, G.15
Greenberg, M.E.16
-
25
-
-
14044264220
-
A motif within SET-domain proteins binds single-stranded nucleic acids and transcribed and supercoiled DNAs and can interfere with assembly of nucleosomes
-
doi: 10.1128/MCB.25.5.1891-1899.2005
-
Krajewski WA, Nakamura T, Mazo A, Canaani E. 2005. A motif within SET-domain proteins binds single-stranded nucleic acids and transcribed and supercoiled DNAs and can interfere with assembly of nucleosomes. Molecular and Cellular Biology 25:1891-1899. doi: 10.1128/MCB.25.5.1891-1899.2005.
-
(2005)
Molecular and Cellular Biology
, vol.25
, pp. 1891-1899
-
-
Krajewski, W.A.1
Nakamura, T.2
Mazo, A.3
Canaani, E.4
-
26
-
-
84872135457
-
Control of somatic tissue differentiation by the long non-coding RNA TINCR
-
doi: 10.1038/nature11661
-
Kretz M, Siprashvili Z, Chu C, Webster DE, Zehnder A, Qu K, Lee CS, Flockhart RJ, Groff AF, Chow J, Johnston D, Kim GE, Spitale RC, Flynn RA, Zheng GX, Aiyer S, Raj A, Rinn JL, Chang HY, Khavari PA. 2013. Control of somatic tissue differentiation by the long non-coding RNA TINCR. Nature 493:231-235. doi: 10.1038/nature11661.
-
(2013)
Nature
, vol.493
, pp. 231-235
-
-
Kretz, M.1
Siprashvili, Z.2
Chu, C.3
Webster, D.E.4
Zehnder, A.5
Qu, K.6
Lee, C.S.7
Flockhart, R.J.8
Groff, A.F.9
Chow, J.10
Johnston, D.11
Kim, G.E.12
Spitale, R.C.13
Flynn, R.A.14
Zheng, G.X.15
Aiyer, S.16
Raj, A.17
Rinn, J.L.18
Chang, H.Y.19
Khavari, P.A.20
more..
-
27
-
-
84874368349
-
Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
-
doi: 10.1038/nature11884
-
Lai F, Orom UA, Cesaroni M, Beringer M, Taatjes DJ, Blobel GA, Shiekhattar R. 2013. Activating RNAs associate with Mediator to enhance chromatin architecture and transcription. Nature 494:497-501. doi: 10.1038/nature11884.
-
(2013)
Nature
, vol.494
, pp. 497-501
-
-
Lai, F.1
Orom, U.A.2
Cesaroni, M.3
Beringer, M.4
Taatjes, D.J.5
Blobel, G.A.6
Shiekhattar, R.7
-
28
-
-
84864601941
-
The histone aetyltransferase MOF Is a key regulator of the embryonic stem cell core transcriptional network
-
doi: 10.1016/j.stem.2012.04.023
-
Li X, Li L, Pandey R, Byun JS, Gardner K, Qin Z, Dou Y. 2012. The histone aetyltransferase MOF Is a key regulator of the embryonic stem cell core transcriptional network. Cell Stem Cell 11:163-178. doi: 10.1016/j.stem.2012.04.023.
-
(2012)
Cell Stem Cell
, vol.11
, pp. 163-178
-
-
Li, X.1
Li, L.2
Pandey, R.3
Byun, J.S.4
Gardner, K.5
Qin, Z.6
Dou, Y.7
-
29
-
-
68749120703
-
New insights to the MLL recombinome of acute leukemias
-
doi: 10.1038/leu.2009.33
-
Meyer C, Kowarz E, Hofmann J, Renneville A, Zuna J, Trka J, Ben Abdelali R, Macintyre E, De Braekeleer E, De Braekeleer M, De Braekeleer M, Delabesse E, de Oliveira MP, Cavé H, Clappier E, van Dongen JJ, Balgobind BV, van den Heuvel-Eibrink MM, Beverloo HB, Panzer-Grümayer R, Teigler-Schlegel A, Harbott J, Kjeldsen E, Schnittger S, Koehl U, Gruhn B, Heidenreich O, Chan LC, Yip SF, Krzywinski M, Eckert C, Möricke A, Schrappe M, Alonso CN, Schäfer BW, Krauter J, Lee DA, Zur Stadt U, Te Kronnie G, Sutton R, Izraeli S, Trakhtenbrot L, Lo Nigro L, Tsaur G, Fechina L, Szczepanski T, Strehl S, Ilencikova D, Molkentin M, Burmeister T, Dingermann T, Klingebiel T, Marschalek R. 2009. New insights to the MLL recombinome of acute leukemias. Leukemia 23:1490-1499. doi: 10.1038/leu.2009.33.
-
(2009)
Leukemia
, vol.23
, pp. 1490-1499
-
-
Meyer, C.1
Kowarz, E.2
Hofmann, J.3
Renneville, A.4
Zuna, J.5
Trka, J.6
Ben Abdelali, R.7
McIntyre, E.8
De Braekeleer, E.9
De Braekeleer, M.10
De Braekeleer, M.11
Delabesse, E.12
de Oliveira, M.P.13
Cavé, H.14
Clappier, E.15
van Dongen, J.J.16
Balgobind, B.V.17
van den Heuvel-Eibrink, M.M.18
Beverloo, H.B.19
Panzer-Grümayer, R.20
Teigler-Schlegel, A.21
Harbott, J.22
Kjeldsen, E.23
Schnittger, S.24
Koehl, U.25
Gruhn, B.26
Heidenreich, O.27
Chan, L.C.28
Yip, S.F.29
Krzywinski, M.30
Eckert, C.31
Möricke, A.32
Schrappe, M.33
Alonso, C.N.34
Schäfer, B.W.35
Krauter, J.36
Lee, D.A.37
Zur Stadt, U.38
Te Kronnie, G.39
Sutton, R.40
Izraeli, S.41
Trakhtenbrot, L.42
Lo Nigro, L.43
Tsaur, G.44
Fechina, L.45
Szczepanski, T.46
Strehl, S.47
Ilencikova, D.48
Molkentin, M.49
Burmeister, T.50
Dingermann, T.51
Klingebiel, T.52
Marschalek, R.53
more..
-
30
-
-
84856733701
-
Symmetric dimethylation of H3R2 is a newly identified histone mark that supports euchromatin maintenance
-
doi: 10.1038/nsmb.2209
-
Migliori V, Muller J, Phalke S, Low D, Bezzi M, Mok WC, Sahu SK, Gunaratne J, Capasso P, Bassi C, Cecatiello V, De Marco A, Blackstock W, Kuznetsov V, Amati B, Mapelli M, Guccione E. 2012. Symmetric dimethylation of H3R2 is a newly identified histone mark that supports euchromatin maintenance. Nature Structural & Molecular Biology 19:136-144. doi: 10.1038/nsmb.2209.
-
(2012)
Nature Structural & Molecular Biology
, vol.19
, pp. 136-144
-
-
Migliori, V.1
Muller, J.2
Phalke, S.3
Low, D.4
Bezzi, M.5
Mok, W.C.6
Sahu, S.K.7
Gunaratne, J.8
Capasso, P.9
Bassi, C.10
Cecatiello, V.11
De Marco, A.12
Blackstock, W.13
Kuznetsov, V.14
Amati, B.15
Mapelli, M.16
Guccione, E.17
-
31
-
-
33947098453
-
Histone replacement marks the boundaries of cis-regulatory domains
-
doi: 10.1126/science.1134004
-
Mito Y, Henikoff JG, Henikoff S. 2007. Histone replacement marks the boundaries of cis-regulatory domains. Science 315:1408-1411. doi: 10.1126/science.1134004.
-
(2007)
Science
, vol.315
, pp. 1408-1411
-
-
Mito, Y.1
Henikoff, J.G.2
Henikoff, S.3
-
32
-
-
79960953769
-
The demoiselle of X-inactivation: 50 years old and as trendy and mesmerising as ever
-
doi: 10.1371/journal.pgen.1002212
-
Morey C, Avner P. 2011. The demoiselle of X-inactivation: 50 years old and as trendy and mesmerising as ever. PLOS Genetics 7:e1002212. doi: 10.1371/journal.pgen.1002212.
-
(2011)
PLOS Genetics
, vol.7
-
-
Morey, C.1
Avner, P.2
-
33
-
-
79960897683
-
X-linked mental retardation gene CUL4B targets ubiquitylation of H3K4 methyltransferase component WDR5 and regulates neuronal gene expression
-
doi: 10.1016/j.molcel.2011.05.033
-
Nakagawa T, Xiong Y. 2011. X-linked mental retardation gene CUL4B targets ubiquitylation of H3K4 methyltransferase component WDR5 and regulates neuronal gene expression. Molecular Cell 43:381-391. doi: 10.1016/j.molcel.2011.05.033.
-
(2011)
Molecular Cell
, vol.43
, pp. 381-391
-
-
Nakagawa, T.1
Xiong, Y.2
-
34
-
-
84856492490
-
Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors
-
doi: 10.1038/emboj.2011.459
-
Ng SY, Johnson R, Stanton LW. 2012. Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors. The EMBO Journal 31:522-533. doi: 10.1038/emboj.2011.459.
-
(2012)
The EMBO Journal
, vol.31
, pp. 522-533
-
-
Ng, S.Y.1
Johnson, R.2
Stanton, L.W.3
-
35
-
-
77958477957
-
Characterization of a novel WDR5-binding site that recruits RbBP5 through a conserved motif to enhance methylation of histone H3 lysine 4 by mixed lineage leukemia protein-1
-
doi: 10.1074/jbc.M110.159921
-
Odho Z, Southall SM, Wilson JR. 2010. Characterization of a novel WDR5-binding site that recruits RbBP5 through a conserved motif to enhance methylation of histone H3 lysine 4 by mixed lineage leukemia protein-1. The Journal of Biological Chemistry 285:32967-32976. doi: 10.1074/jbc.M110.159921.
-
(2010)
The Journal of Biological Chemistry
, vol.285
, pp. 32967-32976
-
-
Odho, Z.1
Southall, S.M.2
Wilson, J.R.3
-
36
-
-
77957243921
-
Long noncoding RNAs with enhancer-like function in human cells
-
doi: 10.1016/j.cell.2010.09.001
-
Orom UA, Derrien T, Beringer M, Gumireddy K, Gardini A, Bussotti G, Lai F, Zytnicki M, Notredame C, Huang Q, Guigo R, Shiekhattar R. 2010. Long noncoding RNAs with enhancer-like function in human cells. Cell 143:46-58. doi: 10.1016/j.cell.2010.09.001.
-
(2010)
Cell
, vol.143
, pp. 46-58
-
-
Orom, U.A.1
Derrien, T.2
Beringer, M.3
Gumireddy, K.4
Gardini, A.5
Bussotti, G.6
Lai, F.7
Zytnicki, M.8
Notredame, C.9
Huang, Q.10
Guigo, R.11
Shiekhattar, R.12
-
37
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
doi: 10.1038/nature09692
-
Rada-Iglesias A, Bajpai R, Swigut T, Brugmann SA, Flynn RA, Wysocka J. 2011. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470:279-283. doi: 10.1038/nature09692.
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
38
-
-
67650711140
-
Genome-wide views of chromatin structure
-
doi: 10.1146/annurev.biochem.78.071107.134639
-
Rando OJ, Chang HY. 2009. Genome-wide views of chromatin structure. Annual Review of Biochemistry 78:245-271. doi: 10.1146/annurev.biochem.78.071107.134639.
-
(2009)
Annual Review of Biochemistry
, vol.78
, pp. 245-271
-
-
Rando, O.J.1
Chang, H.Y.2
-
39
-
-
84861904178
-
Genome regulation by long noncoding RNAs
-
doi: 10.1146/annurev-biochem-051410-092902
-
Rinn JL, Chang HY. 2012. Genome regulation by long noncoding RNAs. Annual Review of Biochemistry 81:145-166. doi: 10.1146/annurev-biochem-051410-092902.
-
(2012)
Annual Review of Biochemistry
, vol.81
, pp. 145-166
-
-
Rinn, J.L.1
Chang, H.Y.2
-
40
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
doi: 10.1016/j.cell.2007.05.022
-
Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA, Goodnough LH, Helms JA, Farnham PJ, Segal E, Chang HY. 2007. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 129:1311-1323. doi: 10.1016/j.cell.2007.05.022.
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
Brugmann, S.A.6
Goodnough, L.H.7
Helms, J.A.8
Farnham, P.J.9
Segal, E.10
Chang, H.Y.11
-
41
-
-
75149163987
-
Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells
-
doi: 10.1261/rna.1441510
-
Sheik Mohamed J, Gaughwin PM, Lim B, Robson P, Lipovich L. 2010. Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells. RNA 16:324-337. doi: 10.1261/rna.1441510.
-
(2010)
RNA
, vol.16
, pp. 324-337
-
-
Sheik Mohamed, J.1
Gaughwin, P.M.2
Lim, B.3
Robson, P.4
Lipovich, L.5
-
42
-
-
84894247159
-
RIPiT-Seq: A high-throughput approach for footprinting RNA:Protein complexes
-
doi: 10.1016/j.ymeth.2013.09.013
-
Singh G, Ricci EP, Moore MJ. 2013. RIPiT-Seq: a high-throughput approach for footprinting RNA:protein complexes. Methods. doi: 10.1016/j.ymeth.2013.09.013.
-
(2013)
Methods
-
-
Singh, G.1
Ricci, E.P.2
Moore, M.J.3
-
43
-
-
0023806075
-
Single-step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transferase
-
doi: 10.1016/0378-1119(88)90005-4
-
Smith DB, Johnson KS. 1988. Single-step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transferase. Gene 67:31-40. doi: 10.1016/0378-1119(88)90005-4.
-
(1988)
Gene
, vol.67
, pp. 31-40
-
-
Smith, D.B.1
Johnson, K.S.2
-
44
-
-
79954552505
-
The super elongation complex (SEC) and MLL in development and disease
-
doi: 10.1101/gad.2015411
-
Smith E, Lin C, Shilatifard A. 2011. The super elongation complex (SEC) and MLL in development and disease. Genes & Development 25:661-672. doi: 10.1101/gad.2015411.
-
(2011)
Genes & Development
, vol.25
, pp. 661-672
-
-
Smith, E.1
Lin, C.2
Shilatifard, A.3
-
45
-
-
78650212707
-
Prmt5 is essential for early mouse development and acts in the cytoplasm to maintain ES cell pluripotency
-
doi: 10.1101/gad.606110
-
Tee WW, Pardo M, Theunissen TW, Yu L, Choudhary JS, Hajkova P, Surani MA. 2010. Prmt5 is essential for early mouse development and acts in the cytoplasm to maintain ES cell pluripotency. Genes & Development 24:2772-2777. doi: 10.1101/gad.606110.
-
(2010)
Genes & Development
, vol.24
, pp. 2772-2777
-
-
Tee, W.W.1
Pardo, M.2
Theunissen, T.W.3
Yu, L.4
Choudhary, J.S.5
Hajkova, P.6
Surani, M.A.7
-
46
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
doi: 10.1093/bioinformatics/btp120
-
Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25:1105-1111. doi: 10.1093/bioinformatics/btp120.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
48
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
doi: 10.1126/science.1192002
-
Tsai MC, Manor O, Wan Y, Mosammaparast N, Wang JK, Lan F, Shi Y, Segal E, Chang HY. 2010. Long noncoding RNA as modular scaffold of histone modification complexes. Science 329:689-693. doi: 10.1126/science.1192002.
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.C.1
Manor, O.2
Wan, Y.3
Mosammaparast, N.4
Wang, J.K.5
Lan, F.6
Shi, Y.7
Segal, E.8
Chang, H.Y.9
-
50
-
-
84455206362
-
Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
-
doi: 10.1016/j.cell.2011.11.055
-
Ulitsky I, Shkumatava A, Jan CH, Sive H, Bartel DP. 2011. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell 147:1537-1550. doi: 10.1016/j.cell.2011.11.055.
-
(2011)
Cell
, vol.147
, pp. 1537-1550
-
-
Ulitsky, I.1
Shkumatava, A.2
Jan, C.H.3
Sive, H.4
Bartel, D.P.5
-
51
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
doi: 10.1016/j.molcel.2011.08.018
-
Wang KC, Chang HY. 2011. Molecular mechanisms of long noncoding RNAs. Molecular Cell 43:904-914. doi: 10.1016/j.molcel.2011.08.018.
-
(2011)
Molecular Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
52
-
-
79953748673
-
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
-
doi: 10.1038/nature09819
-
Wang KC, Yang YW, Liu B, Sanyal A, Corces-Zimmerman R, Chen Y, Lajoie BR, Protacio A, Flynn RA, Gupta RA, Wysocka J, Lei M, Dekker J, Helms JA, Chang HY. 2011. A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature 472:120-124. doi: 10.1038/nature09819.
-
(2011)
Nature
, vol.472
, pp. 120-124
-
-
Wang, K.C.1
Yang, Y.W.2
Liu, B.3
Sanyal, A.4
Corces-Zimmerman, R.5
Chen, Y.6
Lajoie, B.R.7
Protacio, A.8
Flynn, R.A.9
Gupta, R.A.10
Wysocka, J.11
Lei, M.12
Dekker, J.13
Helms, J.A.14
Chang, H.Y.15
-
53
-
-
77953912031
-
Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repression
-
doi: 10.1016/j.cell.2010.05.016
-
Wang Z, Song J, Milne TA, Wang GG, Li H, Allis CD, Patel DJ. 2010. Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repression. Cell 141:1183-1194. doi: 10.1016/j.cell.2010.05.016.
-
(2010)
Cell
, vol.141
, pp. 1183-1194
-
-
Wang, Z.1
Song, J.2
Milne, T.A.3
Wang, G.G.4
Li, H.5
Allis, C.D.6
Patel, D.J.7
-
54
-
-
20444417108
-
WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development
-
doi: 10.1016/j.cell.2005.03.036
-
Wysocka J, Swigut T, Milne TA, Dou Y, Zhang X, Burlingame AL, Roeder RG, Brivanlou AH, Allis CD. 2005. WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development. Cell 121:859-872. doi: 10.1016/j.cell.2005.03.036.
-
(2005)
Cell
, vol.121
, pp. 859-872
-
-
Wysocka, J.1
Swigut, T.2
Milne, T.A.3
Dou, Y.4
Zhang, X.5
Burlingame, A.L.6
Roeder, R.G.7
Brivanlou, A.H.8
Allis, C.D.9
-
55
-
-
78650253763
-
Genome-wide identification of polycomb-associated RNAs by RIP-seq
-
doi: 10.1016/j.molcel.2010.12.011
-
Zhao J, Ohsumi TK, Kung JT, Ogawa Y, Grau DJ, Sarma K, Song JJ, Kingston RE, Borowsky M, Lee JT. 2010. Genome-wide identification of polycomb-associated RNAs by RIP-seq. Molecular Cell 40:939-953. doi: 10.1016/j.molcel.2010.12.011.
-
(2010)
Molecular Cell
, vol.40
, pp. 939-953
-
-
Zhao, J.1
Ohsumi, T.K.2
Kung, J.T.3
Ogawa, Y.4
Grau, D.J.5
Sarma, K.6
Song, J.J.7
Kingston, R.E.8
Borowsky, M.9
Lee, J.T.10
|