-
1
-
-
0025183708
-
Basic local alignment search tool
-
doi: 10.1016/S0022-2836(05)80360-2
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990). Basic local alignment search tool. J. Mol. Biol. 215, 403-410. doi: 10.1016/S0022-2836(05)80360-2.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
84865294429
-
Genome-wide scale-free network inference for Candida albicans
-
doi: 10.3389/fmicb.2012.00051
-
Altwasser, R., Linde, J., Buyko, E., Hahn, U., and Guthke, R. (2012). Genome-wide scale-free network inference for Candida albicans. Front. Microbiol. 3:51. doi: 10.3389/fmicb.2012.00051.
-
(2012)
Front. Microbiol.
, vol.3
, pp. 51
-
-
Altwasser, R.1
Linde, J.2
Buyko, E.3
Hahn, U.4
Guthke, R.5
-
3
-
-
75549090164
-
The Aspergillus genome database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community
-
doi: 10.1093/nar/gkp751
-
Arnaud, M. B., Chibucos, M. C., Costanzo, M. C., Crabtree, J., Inglis, D. O., Lotia, A., et al. (2010). The Aspergillus genome database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community. Nucleic Acids Res. 38, D420-D427. doi: 10.1093/nar/gkp751.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Arnaud, M.B.1
Chibucos, M.C.2
Costanzo, M.C.3
Crabtree, J.4
Inglis, D.O.5
Lotia, A.6
-
4
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
doi: 10.1038/75556
-
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., et al. (2000). Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25, 25-29. doi: 10.1038/75556.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
-
5
-
-
84865077624
-
Network biology methods integrating biological data for translational science
-
doi: 10.1093/bib/bbr075
-
Bebek, G., Koyutürk, M., Price, N. D., and Chance, M. R. (2012). Network biology methods integrating biological data for translational science. Brief Bioinform. 13, 446-459. doi: 10.1093/bib/bbr075.
-
(2012)
Brief Bioinform.
, vol.13
, pp. 446-459
-
-
Bebek, G.1
Koyutürk, M.2
Price, N.D.3
Chance, M.R.4
-
6
-
-
0035733108
-
The control of the false discovery rate in multiple testing under dependency
-
doi: 10.1214/aos/1013699998
-
Benjamini, Y., and Yekutieli, D. (2001). The control of the false discovery rate in multiple testing under dependency. Ann. Stat. 29, 1165-1188. doi: 10.1214/aos/1013699998.
-
(2001)
Ann. Stat.
, vol.29
, pp. 1165-1188
-
-
Benjamini, Y.1
Yekutieli, D.2
-
7
-
-
84871292787
-
Regulation of fungal secondary metabolism
-
doi: 10.1038/nrmicro2916
-
Brakhage, A. A. (2013). Regulation of fungal secondary metabolism. Nat. Rev. Microbiol. 11, 21-32. doi: 10.1038/nrmicro2916.
-
(2013)
Nat. Rev. Microbiol.
, vol.11
, pp. 21-32
-
-
Brakhage, A.A.1
-
8
-
-
78650198931
-
Fungal secondary metabolites - strategies to activate silent gene clusters
-
doi: 10.1016/j.fgb.2010.04.004
-
Brakhage, A. A., and Schroeckh, V. (2011). Fungal secondary metabolites - strategies to activate silent gene clusters. Fungal Genet. Biol. 48, 15-22. doi: 10.1016/j.fgb.2010.04.004.
-
(2011)
Fungal Genet. Biol.
, vol.48
, pp. 15-22
-
-
Brakhage, A.A.1
Schroeckh, V.2
-
9
-
-
0029912229
-
Twenty-five coregulated transcripts define a sterigmatocystin gene cluster in Aspergillus nidulans
-
doi: 10.1073/pnas.93.4.1418
-
Brown, D. W., Yu, J. H., Kelkar, H. S., Fernandes, M., Nesbitt, T. C., Keller, N. P., et al. (1996). Twenty-five coregulated transcripts define a sterigmatocystin gene cluster in Aspergillus nidulans. Proc. Natl. Acad. Sci. U.S.A. 93, 1418-1422. doi: 10.1073/pnas.93.4.1418.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 1418-1422
-
-
Brown, D.W.1
Yu, J.H.2
Kelkar, H.S.3
Fernandes, M.4
Nesbitt, T.C.5
Keller, N.P.6
-
10
-
-
63049128934
-
A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches
-
doi: 10.1016/j.cell.2009.01.055
-
Cantone, I., Marucci, L., Iorio, F., Ricci, M. A., Belcastro, V., Bansal, M., et al. (2009). A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches. Cell 137, 172-181. doi: 10.1016/j.cell.2009.01.055.
-
(2009)
Cell
, vol.137
, pp. 172-181
-
-
Cantone, I.1
Marucci, L.2
Iorio, F.3
Ricci, M.A.4
Belcastro, V.5
Bansal, M.6
-
11
-
-
77954512315
-
An integrated dataset for in silico drug discovery
-
doi: 10.2390/biecoll-jib-2010-116
-
Cockell, S. J., Weile, J., Lord, P., Wipat, C., Andriychenko, D., Pocock, M., et al. (2010). An integrated dataset for in silico drug discovery. J. Integr. Bioinform. 7, 116. doi: 10.2390/biecoll-jib-2010-116.
-
(2010)
J. Integr. Bioinform.
, vol.7
, pp. 116
-
-
Cockell, S.J.1
Weile, J.2
Lord, P.3
Wipat, C.4
Andriychenko, D.5
Pocock, M.6
-
12
-
-
43849105220
-
Analysis of Aspergillus nidulans metabolism at the genome-scale
-
doi: 10.1186/1471-2164-9-163
-
David, H., Ozçelik, I. S., Hofmann, G., and Nielsen, J. (2008). Analysis of Aspergillus nidulans metabolism at the genome-scale. BMC Genomics 9:163. doi: 10.1186/1471-2164-9-163.
-
(2008)
BMC Genomics
, vol.9
, pp. 163
-
-
David, H.1
Ozçelik, I.S.2
Hofmann, G.3
Nielsen, J.4
-
13
-
-
80053946203
-
SiTaR: a novel tool for transcription factor binding site prediction
-
doi: 10.1093/bioinformatics/btr492
-
Fazius, E., Shelest, V., and Shelest, E. (2011). SiTaR: a novel tool for transcription factor binding site prediction. Bioinformatics 27, 2806-2811. doi: 10.1093/bioinformatics/btr492.
-
(2011)
Bioinformatics
, vol.27
, pp. 2806-2811
-
-
Fazius, E.1
Shelest, V.2
Shelest, E.3
-
14
-
-
84875391572
-
Ensembl 2013
-
doi: 10.1093/nar/gks1236
-
Flicek, P., Ahmed, I., Amode, M. R., Barrell, D., Beal, K., Brent, S., et al. (2013). Ensembl 2013. Nucleic Acids Res. 41, D48-D55. doi: 10.1093/nar/gks1236.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Flicek, P.1
Ahmed, I.2
Amode, M.R.3
Barrell, D.4
Beal, K.5
Brent, S.6
-
15
-
-
17444430052
-
Dynamic network reconstruction from gene expression data applied to immune response during bacterial infection
-
doi: 10.1093/bioinformatics/bti226
-
Guthke, R., Möller, U., Hoffmann, M., Thies, F., and Töpfer, S. (2005). Dynamic network reconstruction from gene expression data applied to immune response during bacterial infection. Bioinformatics 21, 1626-1634. doi: 10.1093/bioinformatics/bti226.
-
(2005)
Bioinformatics
, vol.21
, pp. 1626-1634
-
-
Guthke, R.1
Möller, U.2
Hoffmann, M.3
Thies, F.4
Töpfer, S.5
-
16
-
-
77954503430
-
Enhancing data integration with text analysis to find proteins implicated in plant stress response
-
doi: 10.2390/biecoll-jib-2010-121
-
Hassani-Pak, K., Legaie, R., Canevet, C., van den Berg, H. A., Moore, J. D., and Rawlings, C. J. (2010). Enhancing data integration with text analysis to find proteins implicated in plant stress response. J. Integr. Bioinform. 7, 121. doi: 10.2390/biecoll-jib-2010-121.
-
(2010)
J. Integr. Bioinform.
, vol.7
, pp. 121
-
-
Hassani-Pak, K.1
Legaie, R.2
Canevet, C.3
van den Berg, H.A.4
Moore, J.D.5
Rawlings, C.J.6
-
17
-
-
61349180117
-
Gene regulatory network inference: data integration in dynamic models-a review
-
doi: 10.1016/j.biosystems.2008.12.004
-
Hecker, M., Lambeck, S., Toepfer, S., van Someren, E., and Guthke, R. (2009). Gene regulatory network inference: data integration in dynamic models-a review. Biosystems 96, 86-103. doi: 10.1016/j.biosystems.2008.12.004.
-
(2009)
Biosystems
, vol.96
, pp. 86-103
-
-
Hecker, M.1
Lambeck, S.2
Toepfer, S.3
van Someren, E.4
Guthke, R.5
-
18
-
-
84865297119
-
Systems biology of fungal infection
-
doi: 10.3389/fmicb.2012.00108
-
Horn, F., Heinekamp, T., Kniemeyer, O., Pollmächer, J., Valiante, V., and Brakhage, A. A. (2012). Systems biology of fungal infection. Front. Microbiol. 3:108. doi: 10.3389/fmicb.2012.00108.
-
(2012)
Front. Microbiol.
, vol.3
, pp. 108
-
-
Horn, F.1
Heinekamp, T.2
Kniemeyer, O.3
Pollmächer, J.4
Valiante, V.5
Brakhage, A.A.6
-
19
-
-
84897708621
-
Optimization of a microarray probe design focusing on the minimization of cross-hybridization
-
eds H. R. Arabnia and Q.-N. Tran (Las Vegas, NV: CSREA Press). ISBN: 1-60132-172-4.
-
Horn, F., Nützmann, H.-W., Schroeckh, V., Guthke, R., and Hummert, C. (2011). "Optimization of a microarray probe design focusing on the minimization of cross-hybridization," in Proceedings of the International Conference on Bioinformatics and Computational Biology (BIOCOMP'11), Vol. 1, eds H. R. Arabnia and Q.-N. Tran (Las Vegas, NV: CSREA Press), 3-9. ISBN: 1-60132-172-4.
-
(2011)
Proceedings of the International Conference on Bioinformatics and Computational Biology (BIOCOMP'11)
, vol.1
, pp. 3-9
-
-
Horn, F.1
Nützmann, H.-W.2
Schroeckh, V.3
Guthke, R.4
Hummert, C.5
-
20
-
-
33747833111
-
Taverna: a tool for building and running workflows of services
-
doi: 10.1093/nar/gkl320
-
Hull, D., Wolstencroft, K., Stevens, R., Goble, C., Pocock, M. R., Li, P., et al. (2006). Taverna: a tool for building and running workflows of services. Nucleic Acids Res. 34, W729-W732. doi: 10.1093/nar/gkl320.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Hull, D.1
Wolstencroft, K.2
Stevens, R.3
Goble, C.4
Pocock, M.R.5
Li, P.6
-
21
-
-
77955474497
-
A quick guide to large-scale genomic data mining
-
doi: 10.1371/journal.pcbi.1000779
-
Huttenhower, C., and Hofmann, O. (2010). A quick guide to large-scale genomic data mining. PLoS Comput. Biol. 6:e1000779. doi: 10.1371/journal.pcbi.1000779.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Huttenhower, C.1
Hofmann, O.2
-
22
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
doi: 10.1093/nar/gkr988
-
Kanehisa, M., Goto, S., Sato, Y., Furumichi, M., and Tanabe, M. (2012). KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res. 40, D109-D114. doi: 10.1093/nar/gkr988.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
23
-
-
77956795975
-
Finding the right questions: exploratory pathway analysis to enhance biological discovery in large datasets
-
doi: 10.1371/journal.pbio.1000472
-
Kelder, T., Conklin, B. R., Evelo, C. T., and Pico, A. R. (2010). Finding the right questions: exploratory pathway analysis to enhance biological discovery in large datasets. PLoS Biol. 8:e1000472. doi: 10.1371/journal.pbio.1000472.
-
(2010)
PLoS Biol.
, vol.8
-
-
Kelder, T.1
Conklin, B.R.2
Evelo, C.T.3
Pico, A.R.4
-
24
-
-
33745619814
-
Graph-based analysis and visualization of experimental results with Ondex
-
doi: 10.1093/bioinformatics/btl081
-
Köhler, J., Baumbach, J., Taubert, J., Specht, M., Skusa, A., Rüegg, A., et al. (2006). Graph-based analysis and visualization of experimental results with Ondex. Bioinformatics 22, 1383-1390. doi: 10.1093/bioinformatics/btl081.
-
(2006)
Bioinformatics
, vol.22
, pp. 1383-1390
-
-
Köhler, J.1
Baumbach, J.2
Taubert, J.3
Specht, M.4
Skusa, A.5
Rüegg, A.6
-
25
-
-
84855731050
-
Ensembl BioMarts: a hub for data retrieval across taxonomic space
-
bar030, doi: 10.1093/database/bar030
-
Kinsella, R. J., Kähäri, A., Haider, S., Zamora, J., Proctor, G., Spudich, G., et al. (2011). Ensembl BioMarts: a hub for data retrieval across taxonomic space. Database (Oxford) 2011, bar030. doi: 10.1093/database/bar030.
-
(2011)
Database (Oxford)
, vol.2011
-
-
Kinsella, R.J.1
Kähäri, A.2
Haider, S.3
Zamora, J.4
Proctor, G.5
Spudich, G.6
-
26
-
-
78651357634
-
Biologicalnetworks-tools enabling the integration of multi-scale data for the host-pathogen studies
-
doi: 10.1186/1752-0509-5-7
-
Kozhenkov, S., Sedova, M., Dubinina, Y., Gupta, A., Ray, A., Ponomarenko, J., et al. (2011). Biologicalnetworks-tools enabling the integration of multi-scale data for the host-pathogen studies. BMC Syst. Biol. 5:7. doi: 10.1186/1752-0509-5-7.
-
(2011)
BMC Syst. Biol.
, vol.5
, pp. 7
-
-
Kozhenkov, S.1
Sedova, M.2
Dubinina, Y.3
Gupta, A.4
Ray, A.5
Ponomarenko, J.6
-
27
-
-
84855871849
-
Regulatory interactions for iron homeostasis in Aspergillus fumigatus inferred by a systems biology approach
-
doi: 10.1186/1752-0509-6-6
-
Linde, J., Hortschansky, P., Fazius, E., Brakhage, A. A., Guthke, R., and Haas, H. (2012). Regulatory interactions for iron homeostasis in Aspergillus fumigatus inferred by a systems biology approach. BMC Syst. Biol. 6:6. doi: 10.1186/1752-0509-6-6.
-
(2012)
BMC Syst. Biol.
, vol.6
, pp. 6
-
-
Linde, J.1
Hortschansky, P.2
Fazius, E.3
Brakhage, A.A.4
Guthke, R.5
Haas, H.6
-
28
-
-
78049407924
-
Regulatory network modelling of iron acquisition by a fungal pathogen in contact with epithelial cells
-
doi: 10.1186/1752-0509-4-148
-
Linde, J., Wilson, D., Hube, B., and Guthke, R. (2010). Regulatory network modelling of iron acquisition by a fungal pathogen in contact with epithelial cells. BMC Syst. Biol. 4:148. doi: 10.1186/1752-0509-4-148.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 148
-
-
Linde, J.1
Wilson, D.2
Hube, B.3
Guthke, R.4
-
29
-
-
70450225789
-
Data integration for plant genomics-exemplars from the integration of Arabidopsis thaliana databases
-
doi: 10.1093/bib/bbp047
-
Lysenko, A., Hindle, M. M., Taubert, J., Saqi, M., and Rawlings, C. J. (2009). Data integration for plant genomics-exemplars from the integration of Arabidopsis thaliana databases. Brief Bioinform. 10, 676-693. doi: 10.1093/bib/bbp047.
-
(2009)
Brief Bioinform.
, vol.10
, pp. 676-693
-
-
Lysenko, A.1
Hindle, M.M.2
Taubert, J.3
Saqi, M.4
Rawlings, C.J.5
-
31
-
-
47549107689
-
Genemania: a real-time multiple association network integration algorithm for predicting gene function
-
doi: 10.1186/gb-2008-9-s1-s4
-
Mostafavi, S., Ray, D., Warde-Farley, D., Grouios, C., and Morris, Q. (2008). Genemania: a real-time multiple association network integration algorithm for predicting gene function. Genome Biol. 9, S4. doi: 10.1186/gb-2008-9-s1-s4.
-
(2008)
Genome Biol.
, vol.9
-
-
Mostafavi, S.1
Ray, D.2
Warde-Farley, D.3
Grouios, C.4
Morris, Q.5
-
32
-
-
78349277716
-
The COP9 signalosome mediates transcriptional and metabolic response to hormones, oxidative stress protection and cell wall rearrangement during fungal development
-
doi: 10.1111/j.1365-2958.2010.07384.x
-
Nahlik, K., Dumkow, M., Bayram, O., Helmstaedt, K., Busch, S., Valerius, O., et al. (2010). The COP9 signalosome mediates transcriptional and metabolic response to hormones, oxidative stress protection and cell wall rearrangement during fungal development. Mol. Microbiol. 78, 964-979. doi: 10.1111/j.1365-2958.2010.07384.x.
-
(2010)
Mol. Microbiol.
, vol.78
, pp. 964-979
-
-
Nahlik, K.1
Dumkow, M.2
Bayram, O.3
Helmstaedt, K.4
Busch, S.5
Valerius, O.6
-
33
-
-
84858308226
-
Natural products as sources of new drugs over the 30 years from 1981 to 2010
-
doi: 10.1021/np200906s
-
Newman, D. J., and Cragg, G. M. (2012). Natural products as sources of new drugs over the 30 years from 1981 to 2010. J. Nat. Prod. 75, 311-335. doi: 10.1021/np200906s.
-
(2012)
J. Nat. Prod.
, vol.75
, pp. 311-335
-
-
Newman, D.J.1
Cragg, G.M.2
-
34
-
-
80052154073
-
Bacteria-induced natural product formation in the fungus Aspergillus nidulans requires Saga/Ada-mediated histone acetylation
-
doi: 10.1073/pnas.1103523108
-
Nützmann, H.-W., Reyes-Dominguez, Y., Scherlach, K., Schroeckh, V., Horn, F., Gacek, A., et al. (2011). Bacteria-induced natural product formation in the fungus Aspergillus nidulans requires Saga/Ada-mediated histone acetylation. Proc. Natl. Acad. Sci. U.S.A. 108, 14282-14287. doi: 10.1073/pnas.1103523108.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 14282-14287
-
-
Nützmann, H.-W.1
Reyes-Dominguez, Y.2
Scherlach, K.3
Schroeckh, V.4
Horn, F.5
Gacek, A.6
-
35
-
-
65449162644
-
A survey of visualization tools for biological network analysis
-
doi: 10.1186/1756-0381-1-12
-
Pavlopoulos, G. A., Wegener, A.-L., and Schneider, R. (2008). A survey of visualization tools for biological network analysis. Biodata Min. 1, 12. doi: 10.1186/1756-0381-1-12.
-
(2008)
Biodata Min.
, vol.1
, pp. 12
-
-
Pavlopoulos, G.A.1
Wegener, A.-L.2
Schneider, R.3
-
36
-
-
79952039532
-
FungiFun: a web-based application for functional categorization of fungal genes and proteins
-
doi: 10.1016/j.fgb.2010.11.001
-
Priebe, S., Linde, J., Albrecht, D., Guthke, R., and Brakhage, A. A. (2011). FungiFun: a web-based application for functional categorization of fungal genes and proteins. Fungal Genet. Biol. 48, 353-358. doi: 10.1016/j.fgb.2010.11.001.
-
(2011)
Fungal Genet. Biol.
, vol.48
, pp. 353-358
-
-
Priebe, S.1
Linde, J.2
Albrecht, D.3
Guthke, R.4
Brakhage, A.A.5
-
38
-
-
9144257282
-
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes
-
doi: 10.1093/nar/gkh894
-
Ruepp, A., Zollner, A., Maier, D., Albermann, K., Hani, J., Mokrejs, M., et al. (2004). The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res. 32, 5539-5545. doi: 10.1093/nar/gkh894.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 5539-5545
-
-
Ruepp, A.1
Zollner, A.2
Maier, D.3
Albermann, K.4
Hani, J.5
Mokrejs, M.6
-
39
-
-
84863229860
-
Advances in Aspergillus secondary metabolite research in the post-genomic era
-
doi: 10.1039/c2np00084a
-
Sanchez, J. F., Somoza, A. D., Keller, N. P., and Wang, C. C. C. (2012). Advances in Aspergillus secondary metabolite research in the post-genomic era. Nat. Prod. Rep. 29, 351-371. doi: 10.1039/c2np00084a.
-
(2012)
Nat. Prod. Rep.
, vol.29
, pp. 351-371
-
-
Sanchez, J.F.1
Somoza, A.D.2
Keller, N.P.3
Wang, C.C.C.4
-
40
-
-
84856299226
-
Biosynthesis and function of gliotoxin in Aspergillus fumigatus
-
doi: 10.1007/s00253-011-3689-1
-
Scharf, D. H., Heinekamp, T., Remme, N., Hortschansky, P., Brakhage, A. A., and Hertweck, C. (2012). Biosynthesis and function of gliotoxin in Aspergillus fumigatus. Appl. Microbiol. Biotechnol. 93, 467-472. doi: 10.1007/s00253-011-3689-1.
-
(2012)
Appl. Microbiol. Biotechnol.
, vol.93
, pp. 467-472
-
-
Scharf, D.H.1
Heinekamp, T.2
Remme, N.3
Hortschansky, P.4
Brakhage, A.A.5
Hertweck, C.6
-
41
-
-
70149109184
-
Intimate bacterial-fungal interaction triggers biosynthesis of archetypal polyketides in Aspergillus nidulans
-
doi: 10.1073/pnas.0901870106
-
Schroeckh, V., Scherlach, K., Nützmann, H.-W., Shelest, E., Schmidt-Heck, W., Schuemann, J., et al. (2009). Intimate bacterial-fungal interaction triggers biosynthesis of archetypal polyketides in Aspergillus nidulans. Proc. Natl. Acad. Sci. U.S.A. 106, 14558-14563. doi: 10.1073/pnas.0901870106.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 14558-14563
-
-
Schroeckh, V.1
Scherlach, K.2
Nützmann, H.-W.3
Shelest, E.4
Schmidt-Heck, W.5
Schuemann, J.6
-
42
-
-
77649230366
-
Mechanism of de novo branched-chain amino acid synthesis as an alternative electron sink in hypoxic Aspergillus nidulans cells
-
doi: 10.1128/AEM.02135-09
-
Shimizu, M., Fujii, T., Masuo, S., and Takaya, N. (2010). Mechanism of de novo branched-chain amino acid synthesis as an alternative electron sink in hypoxic Aspergillus nidulans cells. Appl. Environ. Microbiol. 76, 1507-1515. doi: 10.1128/AEM.02135-09.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 1507-1515
-
-
Shimizu, M.1
Fujii, T.2
Masuo, S.3
Takaya, N.4
-
43
-
-
0242333835
-
Normalization of cDNA microarray data
-
doi: 10.1016/S1046-2023(03)00155-5
-
Smyth, G. K., and Speed, T. P. (2003). Normalization of cDNA microarray data. Methods 31, 265-273. doi: 10.1016/S1046-2023(03)00155-5.
-
(2003)
Methods
, vol.31
, pp. 265-273
-
-
Smyth, G.K.1
Speed, T.P.2
-
44
-
-
70350432083
-
The OXL format for the exchange of integrated datasets
-
doi: 10.2390/biecoll-jib-2007-62
-
Taubert, J., Sieren, K. P., Hindle, M., Hoekman, B., Winnenburg, R., Philippi, S., et al. (2007). The OXL format for the exchange of integrated datasets. J. Integr. Bioinform. 4, 62. doi: 10.2390/biecoll-jib-2007-62.
-
(2007)
J. Integr. Bioinform.
, vol.4
, pp. 62
-
-
Taubert, J.1
Sieren, K.P.2
Hindle, M.3
Hoekman, B.4
Winnenburg, R.5
Philippi, S.6
-
45
-
-
38349047954
-
The NetGenerator algorithm: reconstruction of gene regulatory networks
-
eds K. Tuyls, R. L. Westra, Y. Saeys, and A. Nowé (Berlin: Springer)
-
Töpfer, S., Guthke, R., Driesch, D., Woetzel, D., and Pfaff, M. (2006). "The NetGenerator algorithm: reconstruction of gene regulatory networks," in KDECB, Lecture notes in computer science, Vol. 4366, eds K. Tuyls, R. L. Westra, Y. Saeys, and A. Nowé (Berlin: Springer), 119-130.
-
(2006)
KDECB, Lecture notes in computer science
, vol.4366
, pp. 119-130
-
-
Töpfer, S.1
Guthke, R.2
Driesch, D.3
Woetzel, D.4
Pfaff, M.5
-
47
-
-
0001793787
-
We need both exploratory and confirmatory
-
doi: 10.1080/00031305.1980.10482706
-
Tukey, J. W. (1980). We need both exploratory and confirmatory. Am. Stat. 34, 23-25. doi: 10.1080/00031305.1980.10482706.
-
(1980)
Am. Stat.
, vol.34
, pp. 23-25
-
-
Tukey, J.W.1
-
48
-
-
0001704377
-
On-line construction of suffix-trees
-
doi: 10.1007/BF01206331
-
Ukkonen, E. (1995). On-line construction of suffix-trees. Algorithmica 14, 249-260. doi: 10.1007/BF01206331.
-
(1995)
Algorithmica
, vol.14
, pp. 249-260
-
-
Ukkonen, E.1
-
49
-
-
0033762670
-
Horizontal gene transfer and the evolution of secondary metabolite gene clusters in fungi: an hypothesis
-
doi: 10.1006/fgbi.2000.1224
-
Walton, J. D. (2000). Horizontal gene transfer and the evolution of secondary metabolite gene clusters in fungi: an hypothesis. Fungal Genet. Biol. 30, 167-171. doi: 10.1006/fgbi.2000.1224.
-
(2000)
Fungal Genet. Biol.
, vol.30
, pp. 167-171
-
-
Walton, J.D.1
-
50
-
-
84871681271
-
Inference of dynamical gene-regulatory networks based on time-resolved multi-stimuli multi-experiment data applying NetGenerator v2.0
-
doi: 10.1186/1752-0509-7-1
-
Weber, M., Henkel, S. G., Vlaic, S., Guthke, R., van Zoelen, E. J., and Driesch, D. (2013). Inference of dynamical gene-regulatory networks based on time-resolved multi-stimuli multi-experiment data applying NetGenerator v2.0. BMC Syst. Biol. 7:1. doi: 10.1186/1752-0509-7-1.
-
(2013)
BMC Syst. Biol.
, vol.7
, pp. 1
-
-
Weber, M.1
Henkel, S.G.2
Vlaic, S.3
Guthke, R.4
van Zoelen, E.J.5
Driesch, D.6
-
51
-
-
28444493739
-
Combining probability from independent tests: the weighted Z-method is superior to Fisher's approach
-
doi: 10.1111/j.1420-9101.2005.00917.x
-
Whitlock, M. C. (2005). Combining probability from independent tests: the weighted Z-method is superior to Fisher's approach. J. Evol. Biol. 18, 1368-1373. doi: 10.1111/j.1420-9101.2005.00917.x.
-
(2005)
J. Evol. Biol.
, vol.18
, pp. 1368-1373
-
-
Whitlock, M.C.1
-
52
-
-
0034800374
-
InterProScan-an integration platform for the signature-recognition methods in InterPro
-
doi: 10.1093/bioinformatics/17.9.847
-
Zdobnov, E. M., and Apweiler, R. (2001). InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17, 847-848. doi: 10.1093/bioinformatics/17.9.847.
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
|