Lichenicolous fungi of the genus Abrothallus (Dothideomycetes: Abrothallales ordo nov.) are sister to the predominantly aquatic Janhulales

Fungal Diversity

Volumn 64, Issue 1, 2014, Pages 295-304

  Pérez Ortega, Sergio ^a   Suija, Ave ^b   Crespo, Ana ^c   De Los Ríos, Asunción ^a  

^a MUSEO NACIONAL DE CIENCIAS NATURALES   (Spain)

^b UNIVERSITY OF TARTU   (Estonia)

^c UNIVERSIDAD COMPLUTENSE DE MADRID   (Spain)

Author keywords

Jahnulales; Lichenicolous; Multi locus analysis; Pleosporomycetidae; Taxonomy

Indexed keywords

EID: 84897694602     PISSN: 15602745     EISSN: 18789129     Source Type: Journal    
DOI: 10.1007/s13225-013-0269-y     Document Type: Article

References (78)

1. Akaike H (1974) A new look at the statistical model identification. IEEE Trans Autom Control 19(6):716-723
2. Arnold AE, Miadlikowska J, Higgins KL et al (2009) A phylogenetic estimation of trophic transition networks for ascomycetous fungi: are lichens cradles of symbiotrophic fungal diversification? Syst Biol 58:283-297
3. Bellemère A, Malherbe MC, Chacun H, Hafellner J (1986) Étude ultrastructurale des asques et des ascospores chez les espèces lichénicoles non lichénisées Abrothallus bertianus de Not. et A. parmeliarum (Sommerf.) Nyl. Cryptog Mycolog 7:47-85
4. Berbee ML, Taylor JW (1992) Two ascomycete classes based on fruiting-body characters and ribosomal DNA sequence. Mol Biol Evol 9(2):278-284
5. Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-552
6. Clauzade G, Diederich P, Roux C (1989) Nelikenigintaj fungoj likenlogaj. Ilustrita determinlibro. Bull Soc Linn Provence Numéro Spécial 1:1-42
7. De Notaris G (1845) Abrothallus novum lichenum genus. Mem Reale Accad Sci Torino ser. 2, 10:351-355
8. De Notaris G (1846) Frammenti lichenografici di un lavoro inedito. G Bot Ital 1:174-224
9. Diederich P (2004) Abrothallus. In: Nash TH III, Ryan BD, Diederich P, Gries C, Bungartz F (eds) Lichen Flora of the Greater Sonoran Desert Region, vol 2, Lichens Unlimited. Arizona State University, Tempe, pp 626-630
10. Don R, Cox P, Wainwright B, Baker K, Mattick J (1991) 'Touchdown' PCR to circumvent spurious priming during gene amplification. Nucleic Acids Res 19(14):4008
11. Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32(5):1792-1797
12. Etayo J, Osorio HS (2004) Algunos hongos liquenícolas de Sudamérica, especialmente del Uruguay. Comun Bot Mus Nac Hist Nat Antrop 6(129):1-19
13. Etayo J, van den Boom PG (2006) Some lichenicolous fungi from Guatemala, with the description of a new species. Herzogia 19:191-197
14. Fink B (1935) The Lichen Flora of the United States. Completed for Publication by Joyce Hedrick. University of Michigan Press, Ann Arbor
15. Gardes M, Bruns TD (1993) ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Mol Ecol 2:113-118
16. Gargas A, Taylor JW (1992) Polymerase chain reaction (PCR) primers for amplifying and sequencing 18S rDNA from lichenized fungi. Mycologia 84:589-592
17. Granberg Å (2001) The phylogenetic relationships of Abrothallus, a genus of lichenicolous fungi. Degree thesis, Umeå University
18. Hafellner J (1994) Beiträge zu einem Prodromus der lichenicolen Pilze Österreichs und angrenzender Gebiete. I. Einige neue oder seltene Arten. Herzogia 10:1-28
19. Hafellner J, Herzog G, Mayrhofer H (2008) Zur Diversität von lichenisierten und lichenicolen Pilzen in den Ennstaler Alpen (Österreich: Steiermark, Oberösterreich). Mitt Naturwiss Ver Steiermark 137:131-204
20. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/Nt. Nucleic Acids Symp Ser 41:95-98
21. Hawksworth DL (1983) A key to the lichen-forming, parasitic, parasymbiotic and saprophytic fungi occurring on lichens in the British Isles. Lichenologist 15:1-44
22. Hawksworth DL (1990) Notes on British lichenicolous fungi: VI. Notes Roy Bot Gard Edinburgh 46(3):391-403
23. Hibbett DS, Binder M, Bischoff JF et al (2007) A higher-level phylogenetic classification of the Fungi. Mycol Res 111(5):509-547
24. Hofstetter V, Miadlikowska J, Kauff F, Lutzoni F (2007) Phylogenetic comparison of protein-coding versus ribosomal RNA-coding sequence data: a case study of the Lecanoromycetes (Ascomycota). Mol Phylogenet Evol 44:412-426
25. Hyde KD, Jones EBG, Liu J-K, Ariyawansa H et al (2013) Families of dothideomycetes. Fungal Divers. doi: 10.1007/s13225-013-0263-4
26. Jatta A (1911) Lichenes (end) Flora Italica Cryptogama, Firenze Pars III. Fasc 4-6:461-958
27. Kauff F, Lutzoni F (2002) Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): among and within order relationships based on nuclear ribosomal RNA small and large subunits. Mol Phylogenet Evol 25:138-156
28. Kirk PM, Cannon PF, Stalpers JA, Minter DW (eds) (2008) Dictionary of fungi, 10th edn. Commonwealth Scientific and Industrial Research Organisation, UK
29. Körber GW (1855) Systema Lichenum Germaniae. Trewendt & Granier, Breslau, Germany
30. Korf RP (1973) Discomycetes and Tuberales. In: Ainsworth GC, Sparrow FK, Sussman AS (eds) The fungi: an advanced treatise, vol 4A. Academic, London, pp 249-319
31. Kotte I (1909) Einige neue Fälle von Nebensymbiose (Parasymbiose). Zentralbl Bakteriol Parasitenkd II 24:74-93
32. Kutorga E, Hawksworth DL (1997) A reassessment of the genera referred to the family Patellariaceae (Ascomycota). Syst Ascomycetum 15(1-2):1-110
33. Lawrey JD, Diederich P (2003) Lichenicolous fungi: interactions, evolution, and biodiversity. Bryologist 106(1):81-120
34. Lawrey JD, Diederich P, Nelsen MP, Freebury C, Van Den Broeck D, Sikaroodi M, Ertz D (2012) Phylogenetic placement of lichenicolous Phoma species in the Phaeosphaeriaceae (Pleosporales, Dothideomycetes). Fungal Divers 55:195-213
35. Lindau G (1897) Pezizineae. In: Engler A, Prantl K (eds) Die Natürlichen Pflanzenfamilien I. W. Engelmann, Leipzig, pp 178-242
36. Lindsay WL (1857) Monograph of the genus Abrothallus (De Notaris and Tulasne emend.). Q J Microsc Sci 5:27-63
37. Liu YJ, Whelen S, Hall BD (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerase II subunit. Mol Biol Evol 16:1799-1808
38. Lumbsch HT, Huhndorf SM (2007) Whatever happened to the pyrenomycetes and loculoascomycetes?. Mycol Res 111:1064-1074
39. Lumbsch HT, Huhndorf SM (2010) Myconet volume 14. Fieldiana 1:1-64
40. Lumbsch HT, Lindemuth R (2001) Major lineages of Dothideomycetes (Ascomycota) inferred from SSU and LSU rDNA sequences. Mycol Res 105:901-908
41. Matheny PB, Liu YJ, Ammirati JF, Hall BD (2002) Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales). Am J Bot 89:688-698
42. Millanes AM, Diederich P, Ekman S, Wedin M (2011) Phylogeny and character evolution in the jelly fungi (Tremellomycetes, Basidiomycota, Fungi). Mol Phylogenet Evol 61(1):12-28
43. Moncalvo JM, Rehner SA, Vilgalys R (1993) Systematics of Lyophyllum section Difformia based on evidence from culture studies and ribosomal DNA sequences. Mycologia 85:788-794
44. Montagne C (1851) Morphologischer Grundriss der Familie der Flechten. Graeger, Halle, Germany
45. Montagne C (1856) Cryptogamia Guyanensis seu plantarum cellularium in Guyana gallica annis 1835-1849 a cl. Leprieur collectarum enumeratio universalis. suite. Ann Sci Nat 16:47-81
46. Nannfeldt JA (1932) Studien über die Morphologie und Systematik der Nicht-Lichenisieren inoperculaten Discomycetes. Nova Acta Regiae Soc Sci Ups 8(2):1-368
47. Nordin I (1964) Abrothallus suecicus, a common lichenicolous fungus. Sven Bot Tidskr 58(1):225-232
48. Pang K-L, Abdel-Wahab MA, Sivichai S, El-Sharaouney HM, Jones EBG (2002) Jahnulales, (Dothideomycetes, Ascomycota): a new order of lignicolous freshwater ascomycetes. Mycol Res 106(9):1031-1042
49. Pérez-Ortega S, Suija A, de los Ríos A (2011) The connection between Abrothallus and its anamorph state Vouauxiomyces established by Denaturing Gradient Gel Electrophoresis (DGGE). Lichenologist 43(3):277-279
50. Peršoh D, Rambold G (2002) Phacopsis - a lichenicolous genus of the family Parmeliaceae. Mycol Prog 1(1):43-55
51. Peršoh D, Rambold G (2012) Lichen-associated fungi of the Letharietum vulpinae. Mycol Prog 11(3):753-760
52. Posada D (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25(7):1253-1256
53. Rambaut A, Drummond AJ (2007) Tracer v1.4. Available from http://beast.bio.ed.ac.uk/Tracer
54. Rehm H (1896) Ascomyceten: Hysteriaceen und Discomyceten. In: Rabenhorst's Kryptogamen-Flora von Deutschland, Oesterreich und der Schweiz, 1(3):209-336
55. Rehner S, Samuels GJ (1994) Taxonomy and phylogeny of Gliocladium analyzed from nuclear large subunits ribosomal DNA sequences. Mycol Res 98:625-634
56. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574
57. Saccardo PA (1889) Sylloge fungorum. Published by the author, Pavia
58. Santesson R, Moberg R, Nordin A, Tønsberg T, Vitikainen O (2004) Lichen-forming and lichenicolous fungi of Fennoscandia. Museum of Evolution, Uppsala University, Uppsala
59. Schaechtelin J, Werner RG (1927) Développement et biologie de l'Abrothallus parmeliarum Smft. Bull Soc Mycol France 42:233-243
60. Schoch CL, Shoemaker RA, Seifert KA, Hambleton S, Spatafora JW, Crous PW (2006) A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 98(6):1041-1052
61. Schoch CL, Crous PW, Groenewald JZ et al (2009a) A class-wide phylogenetic assessment of Dothideomycetes. Stud Mycol 64:1-15
62. Schoch CL, Sung GH, López-Giráldez F et al (2009b) The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Syst Biol 58(2):224-239
63. Shearer CA, Raja HA, Miller AN et al (2009) The molecular phylogeny of freshwater Dothideomycetes. Stud Mycol 64:145-153
64. Sikaroodi M, Lawrey JD, Hawksworth DL, DePriest PT (2001) The phylogenetic position of selected lichenicolous fungi: Hobsonia, Illosporium, and Marchandiomyces. Mycol Res 105(4):453-460
65. Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22(21):2688
66. Stamatakis A, Hoover P, Rougemont J (2008) A rapid bootstrap algorithm for the RAxML web servers. Syst Biol 57(5):758-771
67. Stiller J, Hall BD (1997) The origin of red algae: implications for plastid evolution. PNAS 94:4520-4525
68. Suija A (2006) Variation of morphological characters in the lichenicolous ascomycete genus Abrothallus. Ann Bot Fenn 43:193-204
69. Tulasne L-R (1852) Mémoire pour servir à l'histoire organographique et physiologique des lichens. Ann Sci Nat 17:5-128
70. U'Ren JM, Lutzoni F, Miadlikowska J, Laetsch A, Arnold AE (2012) Host and geographic structure of endophytic and endolichenic fungi at a continental scale. Am J Bot 99(5):898-914
71. Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4239-4246
72. von Keissler K (1929) Die Flechtenparasiten Deutschlands, Österreichs und der Schweiz mit Berücksichtigung der übrigen Länder Europas sowie der angrenzenden Meeresgebiete. Leipzig, Germany
73. Vouaux L (1913) Synopsis des champignons parasites de Lichens (Suite). Bull Soc Mycol France 29:33-128, 399-444, 447-494
74. Wedin M (1994) New and noteworthy lichenicolous fungi from southernmost South America. Lichenologist 26(3):301-310
75. Werth S, Millanes AM, Wedin M, Scheidegger C (2013) Lichenicolous fungi show population subdivision by host species but do not share population history with their hosts. Fungal Biol 117(1):71-84
76. White TJ, Bruns TD, Lee SB, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols - a guide to methods and applications. Academic, San Diego, pp 315-322
77. Zhuang W-Y, Liu C-Y (2012) What an rRNA secondary structure tells about phylogeny of fungi in Ascomycota with emphasis on evolution of major types of ascus. PLoS ONE 7(10):e47546
78. Zoller S, Scheidegger C, Sperisen C (1999) PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. Lichenologist 31(5):511-516