Lichenicolous fungi show population subdivision by host species but do not share population history with their hosts

Fungal Biology

Volumn 117, Issue 1, 2013, Pages 71-84

  Werth, Silke ^a,d   Millanes, Ana María ^b   Wedin, Mats ^c   Scheidegger, Christoph ^a  

^a SWISS FEDERAL RESEARCH INSTITUTE WSL   (Switzerland)

^b UNIVERSIDAD REY JUAN CARLOS   (Spain)

^c SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

^d UNIVERSITY OF ICELAND   (Iceland)

Author keywords

Divergence time; Evolution; Lichenicolous fungi; Pathogen; Population genetics

Indexed keywords

DEMOGRAPHIC HISTORY; DIVERGENCE; EVOLUTIONARY BIOLOGY; FUNGUS; GENETIC STRUCTURE; GEOGRAPHICAL DISTRIBUTION; LICHEN; MOLECULAR ANALYSIS; PARASITE; POPULATION GENETICS; TAXONOMY; TOPOLOGY; VARIANCE ANALYSIS;

ARTICLE; BASIDIOMYCETES; CLASSIFICATION; ECOSYSTEM; EVOLUTION; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HAPLOTYPE; HOST PARASITE INTERACTION; HOST RANGE; LICHEN (ORGANISM); MICROBIOLOGY; PHYLOGENY; POPULATION GENETICS; SPECIES DIFFERENCE;

BASIDIOMYCOTA; BIOLOGICAL EVOLUTION; ECOSYSTEM; GENETIC VARIATION; GENETICS, POPULATION; GEOGRAPHY; HAPLOTYPES; HOST SPECIFICITY; HOST-PARASITE INTERACTIONS; LICHENS; PHYLOGENY; SPECIES SPECIFICITY;

BASIDIOMYCOTA; FUNGI; LOBARIA; LOBARIA PULMONARIA; PULMONARIA; TREMELLA;

EID: 84872597147     PISSN: 18786146     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.funbio.2012.11.007     Document Type: Article

References (69)

1. Baloch E., Grube M. Pronounced genetic diversity in tropical epiphyllous lichen fungi. Molecular Ecology 2009, 18:2185-2197.
2. Boekhout T., Fonseca A., Sampaio J.P., Bandoni R.J., Fell J.W., Kwon-Chung K.J. Discussion of teleomorphic and anamorphic ascomycetous yeasts and yeast-like taxa. The Yeasts, A Taxonomic Study 2011, 1339-1372. Elsevier, New York. C.P. Kurtzman, J.W. Fell, T. Boekhout (Eds.).
3. Borcard D., Legendre P., Drapeau P. Partialling out the spatial component of ecological variation. Ecology 1992, 73:1045-1055.
4. Borges P., Abreu C., Aguiar A., Carvalho P., Jardim R., Melo I., Oliveira P., Sérgio C., Serrano A., Vieira P. A List of the Terrestrial Fungi, Flora and Fauna of Madeira and Selvagens Archipelagos 2008, Direcção Regional do Ambiente da Madeira and Universidade dos Açores, Funchal and Angra do Heroísmo.
5. Borges P.A.V., Hortal J. Time, area and isolation: factors driving the diversification of Azorean arthropods. Journal of Biogeography 2009, 36:178-191.
6. Boustie J., Grube M. Lichens, a promising source of bioactive secondary metabolites. Plant Genetic Resources 2005, 3:273-287.
7. Bucheli E., Gautschi B., Shykoff J.A. Host-specific differentiation in the anther smut fungus Microbotryum violaceum as revealed by microsatellites. Journal of Evolutionary Biology 2000, 13:188-198.
8. Carracedo J.C., Day S., Guillou H., Badiola E.R., Canas J.A., Torrado F.J.P. Hotspot volcanism close to a passive continental margin: the Canary Islands. Geological Magazine 1998, 135:591-604.
9. Chen C.J. Morphological and molecular studies in the genus Tremella. Bibliotheca Mycologica 1998, 174:1-225.
10. Cornejo C., Scheidegger C. Lobaria macaronesica sp. nov., and the phylogeny of Lobaria sect. Lobaria (Lobariaceae) in Macaronesia. Bryologist 2010, 113:590-604.
11. Dal Grande F., Widmer I., Wagner H.H., Scheidegger C. Vertical and horizontal photobiont transmission within populations of a lichen symbiosis. Molecular Ecology 2012, 21:3159-3172.
12. Diederich P. The lichenicolous heterobasidiomycetes. Bibliotheca Lichenologica 1996, 61:1-198.
13. Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 2007, 7:214.
14. Drummond A.J., Rambaut A., Shapiro B., Pybus O.G. Bayesian coalescent inference of past population dynamics from molecular sequences. Molecular Biology and Evolution 2005, 22:1185-1192.
15. Fox R.D., Wong G.J. Homothallism and heterothallism in Tremella fuciformis. Canadian Journal of Botany-Revue Canadienne De Botanique 1990, 68:107-111.
16. Fu Y.X. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 1997, 147:915-925.
17. Gardes M., Bruns T.D. ITS primers with enhanced specificity for Basidiomycetes - application to the identification of mycorrhizae and rusts. Molecular Ecology 1993, 2:113-118.
18. Giraud T., Refregier G., Le Gac M., de Vienne D.M., Hood M.E. Speciation in fungi. Fungal Genetics and Biology 2008, 45:791-802.
19. Greischar M.A., Koskella B. A synthesis of experimental work on parasite local adaptation. Ecology Letters 2007, 10:418-434.
20. Hafellner J. Karschia. Revision einer Sammelgattung an der Grenze von lichenisierten und nichtlichenisierten Ascomyceten. Beihefte zur Nova Hedwigia 1979, 62:1-248.
21. Hanson L.C., Wells K. Compatibility and population studies of three species of Tremella. Mycologia 1991, 83:273-287.
22. Hawksworth D.L. Co-evolution and the detection of ancestry in lichens. Journal of the Hattori Botanical Laboratory 1982, 52:323-329.
23. Hawksworth D.L. Secondary fungi in lichen symbioses: parasites, saprophytes and parasymbionts. Journal of the Hattori Botanical Laboratory 1982, 52:357-366.
24. Högberg N., Kroken S., Thor G., Taylor J.W. Reproductive mode and genetic variation suggest a North American origin of European Letharia vulpina. Molecular Ecology 2002, 11:1191-1196.
25. Kohn L.M. Mechanisms of fungal speciation. Annual Review of Phytopathology 2005, 43:279-308.
26. Larsson P., Gauslaa Y. Rapid juvenile development in old forest lichens. Botany-Botanique 2011, 89:65-72.
27. Lawrey J.D. Biological role of lichen substances. Bryologist 1986, 89:111-122.
28. Lawrey J.D. Chemical interactions between two lichen-degrading fungi. Journal of Chemical Ecology 2000, 26:1821-1831.
29. Lawrey J.D., Diederich P. Lichenicolous fungi: interactions, evolution, and biodiversity. Bryologist 2003, 106:80-120.
30. Lawrey J.D., Torzilli A.P., Chandhoke V. Destruction of lichen chemical defenses by a fungal pathogen. American Journal of Botany 1999, 86:184-189.
31. Leavitt S.D., Esslinger T.L., Divakar P.K., Lumbsch H.T. Miocene and Pliocene dominated diversification of the lichen-forming fungal genus Melanohalea (Parmeliaceae, Ascomycota) and Pleistocene population expansions. BMC Evolutionary Biology 2012, 12:176.
32. Lindblom L., Ekman S. Genetic variation and population differentiation in the lichen-forming ascomycete Xanthoria parietina on the island Storfosna, central Norway. Molecular Ecology 2006, 15:1545-1559.
33. Millanes A.M., Diederich P., Ekman S., Wedin M. Phylogeny and character evolution in the jelly fungi (Tremellomycetes, Basidiomycota, Fungi). Molecular Phylogenetics and Evolution 2011, 61:12-28.
34. Millanes A.M., Westberg M., Wedin M., Diederich P. Tremella diploschistina (Tremellales, Basidiomycota, Fungi), a new lichenicolous species growing on Diploschistes. Lichenologist 2012, 44:321-332.
35. Molina M.C., DePriest P.T., Lawrey J.D. Genetic variation in the widespread lichenicolous fungus Marchandiomyces corallinus. Mycologia 2005, 97:454-463.
36. Nieberding C.M., Olivieri I. Parasites: proxies for host genealogy and ecology?. Trends in Ecology & Evolution 2007, 22:156-165.
37. Nielsen R., Wakeley J. Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 2001, 158:885-896.
38. Oksanen J., Blanchet F.G., Kindt R., Legendre P., O'Hara R.B., Simpson G.L., Solymos P., Stevens M.H.H., Wagner H.H. The Vegan Package 2010, http://cran.r-project.org/web/packages/vegan/vegan.pdf.%20In.
39. Palice Z., Printzen C. Genetic variability in tropical and temperate populations of Trapeliopsis glaucolepidea: evidence against long-range dispersal in a lichen with disjunct distribution. Mycotaxon 2004, 90:43-54.
40. Peres-Neto P., Legendre P., Dray S., Borcard D. Variation partitioning of species data matrices: estimation and comparison of fractions. Ecology 2006, 87:2614-2625.
41. Piercey-Normore M.D. Selection of algal genotypes by three species of lichen fungi in the genus Cladonia. Canadian Journal of Botany 2004, 82:947-961.
42. Poelt J. über parasitische Flechten. II. Planta 1958, 51:288-307.
43. Printzen C., Ekman S. Genetic variability and its geographical distribution in the widely disjunct Cavernularia hultenii. Lichenologist 2002, 34:101-111.
44. Rambaut A. Fig Tree Version 1.2 2008, Available from:. http://tree.bio.ed.ac.uk/software/figtree/.
45. Rambaut A., Drummond A. Tracer v. 1.4 2007, Available from:. http://beast.bio.ed.ac.uk/Tracer.
46. Rambold G., Triebel D. The inter-lecanoralean associations. Bibliotheca Lichenologica 1992, 48:1-201.
47. Robertson J., Piercey-Normore M.D. Gene flow in symbionts of Cladonia arbuscula. Lichenologist 2007, 39:69-82.
48. Rozas J., Sanchez-DelBarrio J.C., Messeguer X., Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 2003, 19:2496-2497.
49. Scheidegger C., Walser J.C. Reintroduction and augmentation of populations of the endangered Lobaria pulmonaria: methods and concepts. Lobarion Lichens as Indicators of the Primeval Forests of the Eastern Carpathians 1998, 33-52. Ukrainian Phytosociological Centre, Kiev. S. Kondratyuk, B. Coppins (Eds.).
50. Scheidegger C., Werth S. Conservation strategies for lichens: insights from population biology. Fungal Biology Reviews 2009, 23:55-66.
51. Sérusiaux E., Diederich P., Ertz D., van den Boom P. New or interesting lichens and lichenicolous fungi from Belgium, Luxembourg and Northern France IX. Lejeunia 2003, 173:1-48.
52. Sérusiaux E., Villarreal A.J.C., Wheeler T., Goffinet B. Recent origin, active speciation and dispersal for the lichen genus Nephroma (Peltigerales) in Macaronesia. Journal of Biogeography 2011, 38:1138-1151.
53. Stone A.R., Hawksworth D.L. Coevolution and Systematics 1986, Clarendon Press, Oxford.
54. Stukenbrock E.H., Banke S., Javan-Nikkhah M., McDonald B.A. Origin and domestication of the fungal wheat pathogen Mycosphaerella graminicola via sympatric speciation. Molecular Biology and Evolution 2007, 24:398-411.
55. Tajima F. The effect of change in population size on DNA polymorphism. Genetics 1989, 123:597-601.
56. Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 1989, 123:585-595.
57. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution 2007, 24:1596-1599.
58. Torzilli A.P., Mikelson P.A., Lawrey J.D. Physiological effect of lichen secondary metabolites on the lichen parasite Marchandiomyces corallinus. Lichenologist 1999, 31:307-314.
59. Wade M.J. The co-evolutionary genetics of ecological communities. Nature Reviews Genetics 2007, 8:185-195.
60. Wahlund S. Zusammensetzung von Population und Korrelationserscheinung vom Standpunkt der Vererbungslehre aus betrachtet. Hereditas 1928, 11:65-106.
61. Werth S. Population genetics of lichen-forming fungi - a review. Lichenologist 2010, 42:499-519.
62. Werth S., Cornejo C., Scheidegger C. A species-specific real-time PCR assay for identification of three lichen-forming fungi, Lobaria pulmonaria, Lobaria immixta, and Lobaria macaronesica. Molecular Ecology Resources 2010, 10:401-403.
63. Werth S., Scheidegger C. Congruent genetic structure in the lichen-forming fungus Lobaria pulmonaria and its green-algal photobiont. Molecular Plant-Microbe Interactions 2012, 25:220-230.
64. Werth S., Sork V.L. Local genetic structure in a North American epiphytic lichen, Ramalina menziesii (Ramalinaceae). American Journal of Botany 2008, 95:568-576.
65. Werth S., Sork V.L. Identity and genetic structure of the photobiont of the epiphytic lichen Ramalina menziesii on three oak species in southern California. American Journal of Botany 2010, 97:821-830.
66. Werth S., Wagner H.H., Holderegger R., Kalwij J.M., Scheidegger C. Effect of disturbances on the genetic diversity of an old-forest associated lichen. Molecular Ecology 2006, 15:911-921.
67. Woerner A.E., Cox M.P., Hammer M.F. Recombination-filtered genomic datasets by information maximization. Bioinformatics 2007, 23:1851-1853.
68. Yahr R., Vilgalys R., DePriest P.T. Geographic variation in algal partners of Cladonia subtenuis (Cladoniaceae) highlights the dynamic nature of a lichen symbiosis. New Phytologist 2006, 171:847-860.
69. Zamora J.C., Perez-Ortega S., Rico V.J. Tremella macrobasidiata (Basidiomycota, Tremellales), a new lichenicolous fungus from the Iberian Peninsula. Lichenologist 2011, 43:407-415.