Classification of pmoA amplicon pyrosequences using BLAST and the lowest common ancestor method in MEGAN

Frontiers in Microbiology

Volumn 5, Issue FEB, 2014, Pages

  Dumont, Marc G ^a   Lüke, Claudia ^a,b   Deng, Yongcui ^a,c   Frenzel, Peter ^a  

^a MAX PLANCK INSTITUTE FOR TERRESTRIAL MICROBIOLOGY   (Germany)

^b RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

^c Nanjing Normal University   (China)

Author keywords

Diversity; Methanotroph; NGS data analysis; PmoA; Pyrosequencing

Indexed keywords

METHANE MONOOXYGENASE; PARTICULATE METHANE MONOOXYGENASE; RNA 16S; UNCLASSIFIED DRUG;

ALGORITHM; AMPLICON; ARTICLE; BAYES THEOREM; BIOINFORMATICS; GENE; GENE SEQUENCE; GENETIC VARIABILITY; HIGH THROUGHPUT SEQUENCING; LAST COMMON ANCESTOR; METAGENOMICS; METHANOTROPHIC BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PMOA GENE; PYROSEQUENCING; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE DATABASE; TAXONOMY;

EID: 84897649901     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2014.00034     Document Type: Article

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