-
1
-
-
0036692251
-
Diversity of 16S rDNA and naphthalene dioxygenase genes from coal-tar-waste-contaminated aquifer waters
-
Bakermans, C., and E. L. Madsen. 2002. Diversity of 16S rDNA and naphthalene dioxygenase genes from coal-tar-waste-contaminated aquifer waters. Microb. Ecol. 44:95-106.
-
(2002)
Microb. Ecol.
, vol.44
, pp. 95-106
-
-
Bakermans, C.1
Madsen, E.L.2
-
2
-
-
0028988625
-
Distribution of redox-sensitive groundwater quality parameters downgradient of a landfill (Grindsted, Denmark)
-
Bjerg, P. L., K. Rugge, J. K. Pedersen, and T. H. Christensen. 1995. Distribution of redox-sensitive groundwater quality parameters downgradient of a landfill (Grindsted, Denmark). Environ. Sci. Technol. 29:1387-1394.
-
(1995)
Environ. Sci. Technol.
, vol.29
, pp. 1387-1394
-
-
Bjerg, P.L.1
Rugge, K.2
Pedersen, J.K.3
Christensen, T.H.4
-
3
-
-
0001679956
-
Microzonation of denitrification activity in stream sediments as studied with a combined oxygen and nitrous oxide microsensor
-
Christensen, P. B., L. P. Nielsen, N. P. Revsbech, and J. Sørensen. 1989. Microzonation of denitrification activity in stream sediments as studied with a combined oxygen and nitrous oxide microsensor. Appl. Environ. Microbiol. 55:1234-1241.
-
(1989)
Appl. Environ. Microbiol.
, vol.55
, pp. 1234-1241
-
-
Christensen, P.B.1
Nielsen, L.P.2
Revsbech, N.P.3
Sørensen, J.4
-
4
-
-
0344172842
-
The domain-specific probe EUB338 is insufficient for the detection of all bacteria: Development and evaluation of a more comprehensive probe set
-
Daims, H., A. Brühl, R. Amann, K.-H. Schleifer, and M. Wagner. 1999. The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22:434-444.
-
(1999)
Syst. Appl. Microbiol.
, vol.22
, pp. 434-444
-
-
Daims, H.1
Brühl, A.2
Amann, R.3
Schleifer, K.-H.4
Wagner, M.5
-
5
-
-
0032500735
-
Isolation of acidophilic methane-oxidizing bacteria from Northern Peat Wetlands
-
DOI 10.1126/science.282.5387.281
-
Dedysh, S. N., N. S. Panikov, W. Liesack, R. Grosskopf, J. Z. Zhou, and J. M. Tiedje. 1998. Isolation of acidophilic methane-oxidizing bacteria from northern peat wetlands. Science 282:281-284. (Pubitemid 28487197)
-
(1998)
Science
, vol.282
, Issue.5387
, pp. 281-284
-
-
Dedysh, S.N.1
Panikov, N.S.2
Liesack, W.3
Grosskopf, R.4
Zhou, J.5
Tiedje, J.M.6
-
6
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
DOI 10.1093/nar/gkh340
-
Edgar, R. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797. (Pubitemid 38832724)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
7
-
-
52949103274
-
Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea
-
Ettwig, K. F., S. Shima, K. T. van de Pas-Schoonen, J. Kahnt, M. H. Medema, H. J. M. op den Camp, M. S. M. Jetten, and M. Strous. 2008. Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea. Environ. Microbiol. 10:3164-3173.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 3164-3173
-
-
Ettwig, K.F.1
Shima, S.2
Van De Pas-Schoonen, K.T.3
Kahnt, J.4
Medema, M.H.5
Op Den Camp, H.J.M.6
Jetten, M.S.M.7
Strous, M.8
-
8
-
-
66249138695
-
Semantides and modern bacterial systematics
-
John Wiley & Sons, Ltd., Chichester, United Kingdom
-
Fuerst, J. A. 2007. Semantides and modern bacterial systematics, p. 1-11. In Encyclopedia of life sciences. John Wiley & Sons, Ltd., Chichester, United Kingdom.
-
(2007)
Encyclopedia of Life Sciences
, pp. 1-11
-
-
Fuerst, J.A.1
-
11
-
-
0345283140
-
Evidence of anoxic methane oxidation coupled to denitrification
-
DOI 10.1016/j.watres.2003.08.024
-
Islas-Lima, S., F. Thalasso, and J. Gomez-Hernandez. 2004. Evidence of anoxic methane oxidation coupled to denitrification. Water Res. 38:13-16. (Pubitemid 37443392)
-
(2004)
Water Research
, vol.38
, Issue.1
, pp. 13-16
-
-
Islas-Lima, S.1
Thalasso, F.2
Gomez-Hernandez, J.3
-
12
-
-
0032147190
-
Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations
-
Juretschko, S., G. Timmermann, M. Schmid, K. H. Schleifer, A. Pommerening-Roser, H. P. Koops, and M. Wagner. 1998. Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations. Appl. Environ. Microbiol. 64:3042-3051.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3042-3051
-
-
Juretschko, S.1
Timmermann, G.2
Schmid, M.3
Schleifer, K.H.4
Pommerening-Roser, A.5
Koops, H.P.6
Wagner, M.7
-
13
-
-
46749119447
-
Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington
-
Kalyuzhnaya, M. G., M. E. Lidstrom, and L. Chistoserdova. 2008. Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington. ISME J. 2:696-706.
-
(2008)
ISME J.
, vol.2
, pp. 696-706
-
-
Kalyuzhnaya, M.G.1
Lidstrom, M.E.2
Chistoserdova, L.3
-
14
-
-
33750311308
-
Adaptation of a freshwater anammox population to high salinity wastewater
-
DOI 10.1016/j.jbiotec.2006.05.012, PII S0168165606004202
-
Kartal, B., M. Koleva, R. Arsov, W. van der Star, M. S. M. Jetten, and M. Strous. 2006. Adaptation of a freshwater anammox population to high salinity wastewater. J. Biotechnol. 126:546-553. (Pubitemid 44634817)
-
(2006)
Journal of Biotechnology
, vol.126
, Issue.4
, pp. 546-553
-
-
Kartal, B.1
Koleva, M.2
Arsov, R.3
Van Der Star, W.4
Jetten, M.S.M.5
Strous, M.6
-
15
-
-
33845714911
-
Candidatus "Anammoxoglobus propionicus," a new propionate oxidizing species of anaerobic ammonium oxidizing bacteria
-
Kartal, B., J. Rattray, L. A. van Niftrik, J. van de Vossenberg, M. C. Schmid, R. I. Webb, S. Schouten, J. A. Fuerst, J. S. S. Damste, M. S. M. Jetten, and M. Strous. 2007. Candidatus "Anammoxoglobus propionicus," a new propionate oxidizing species of anaerobic ammonium oxidizing bacteria. Syst. Appl. Microbiol. 30:39-49.
-
(2007)
Syst. Appl. Microbiol.
, vol.30
, pp. 39-49
-
-
Kartal, B.1
Rattray, J.2
Van Niftrik, L.A.3
Van De Vossenberg, J.4
Schmid, M.C.5
Webb, R.I.6
Schouten, S.7
Fuerst, J.A.8
Damste, J.S.S.9
Jetten, M.S.M.10
Strous, M.11
-
16
-
-
0034074410
-
rRNA operon copy number reflects ecological strategies of bacteria
-
Klappenbach, J. A., J. M. Dunbar, and T. M. Schmidt. 2000. rRNA operon copy number reflects ecological strategies of bacteria. Appl. Environ. Microbiol. 66:1328-1333.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 1328-1333
-
-
Klappenbach, J.A.1
Dunbar, J.M.2
Schmidt, T.M.3
-
17
-
-
0242380174
-
Characterization of depth-related microbial community structure in lake sediment by denaturing gradient gel electrophoresis of amplified 16S rDNA and reversely transcribed 16S rRNA fragments
-
Koizumi, Y., H. Kojima, and M. Fukui. 2003. Characterization of depth-related microbial community structure in lake sediment by denaturing gradient gel electrophoresis of amplified 16S rDNA and reversely transcribed 16S rRNA fragments. FEMS Microbiol. Ecol. 46:147-157.
-
(2003)
FEMS Microbiol. Ecol.
, vol.46
, pp. 147-157
-
-
Koizumi, Y.1
Kojima, H.2
Fukui, M.3
-
18
-
-
14344254418
-
-
Kluwer Academic Publishing, London, United Kingdom
-
Kowalchuk, G. A., F. J. de Bruijn, I. M. Head, A. D. Akkermans, and J. D. van Elsas. 2004. Molecular microbial ecology manual (MMEM), 2nd ed., vol.1. Kluwer Academic Publishing, London, United Kingdom.
-
(2004)
Molecular Microbial Ecology Manual (MMEM), 2nd Ed.
, vol.1
-
-
Kowalchuk, G.A.1
De Bruijn, F.J.2
Head, I.M.3
Akkermans, A.D.4
Van Elsas, J.D.5
-
19
-
-
0035207943
-
Methane production and oxidation in an anoxic rice soil as influenced by inorganic redox species
-
Kumaraswamy, S., B. Ramakrishnan, and N. Sethunathan. 2001. Methane production and oxidation in an anoxic rice soil as influenced by inorganic redox species. J. Environ. Qual. 30:2195-2201.
-
(2001)
J. Environ. Qual.
, vol.30
, pp. 2195-2201
-
-
Kumaraswamy, S.1
Ramakrishnan, B.2
Sethunathan, N.3
-
20
-
-
0242515747
-
Anaerobic ammonium oxidation by anammox bacteria in the Black Sea
-
DOI 10.1038/nature01472
-
Kuypers, M. M. M., A. O. Sliekers, G. Lavik, M. Schmid, B. B. Jorgensen, J. G. Kuenen, J. S. S. Damste, M. Strous, and M. S. M. Jetten. 2003. Anaerobic ammonium oxidation by anammox bacteria in the Black Sea. Nature 422:608-611. (Pubitemid 36460412)
-
(2003)
Nature
, vol.422
, Issue.6932
, pp. 608-611
-
-
Kuypers, M.M.M.1
Silekers, A.O.2
Lavik, G.3
Schmid, M.4
Joorgensen, B.B.5
Kuenen, J.G.6
Sinninghe Damste, J.S.7
Strous, M.8
Jetten, M.S.M.9
-
21
-
-
0001857117
-
16S/23S rRNA sequencing
-
E. Stackebrandt and M. Goodfellow (ed.), John Wiley & Sons, New York, NY
-
Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley & Sons, New York, NY.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
22
-
-
33750073809
-
Potential rates and pathways of microbial nitrate reduction in coastal sediments
-
Laverman, A. M., P. Van Cappellen, D. van Rotterdam-Los, C. Pallud, and J. Abell. 2006. Potential rates and pathways of microbial nitrate reduction in coastal sediments. FEMS Microbiol. Ecol. 58:179-192.
-
(2006)
FEMS Microbiol. Ecol.
, vol.58
, pp. 179-192
-
-
Laverman, A.M.1
Van Cappellen, P.2
Van Rotterdam-Los, D.3
Pallud, C.4
Abell, J.5
-
23
-
-
36849050728
-
Archaeal and bacterial community composition of a pristine coastal aquifer in Doñana National Park, Spain
-
Lopez-Archilla, A. I., D. Moreira, S. Velasco, and P. Lopez-Garcia. 2007. Archaeal and bacterial community composition of a pristine coastal aquifer in Doñana National Park, Spain. Aquat. Microb. Ecol. 47:123-139.
-
(2007)
Aquat. Microb. Ecol.
, vol.47
, pp. 123-139
-
-
Lopez-Archilla, A.I.1
Moreira, D.2
Velasco, S.3
Lopez-Garcia, P.4
-
24
-
-
33846094482
-
In vitro cell growth of marine archaeal-bacterial consortia during anaerobic oxidation of methane with sulfate
-
Nauhaus, K., M. Albrecht, M. Elvert, A. Boetius, and F. Widdel. 2007. In vitro cell growth of marine archaeal-bacterial consortia during anaerobic oxidation of methane with sulfate. Environ. Microbiol. 9:187-196.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 187-196
-
-
Nauhaus, K.1
Albrecht, M.2
Elvert, M.3
Boetius, A.4
Widdel, F.5
-
25
-
-
0023227817
-
On the relation between dry-matter and volume of bacteria
-
Norland, S., M. Heldal, and O. Tumyr. 1987. On the relation between dry-matter and volume of bacteria. Microb. Ecol. 13:95-101.
-
(1987)
Microb. Ecol.
, vol.13
, pp. 95-101
-
-
Norland, S.1
Heldal, M.2
Tumyr, O.3
-
26
-
-
0031711754
-
Bias in template-to-product ratios in multitemplate PCR
-
Polz, M. F., and C. M. Cavanaugh. 1998. Bias in template-to-product ratios in multitemplate PCR. Appl. Environ. Microbiol. 64:3724-3730.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3724-3730
-
-
Polz, M.F.1
Cavanaugh, C.M.2
-
27
-
-
33645876469
-
A microbial consortium couples anaerobic methane oxidation to denitrification
-
Raghoebarsing, A. A., A. Pol, K. T. van de Pas-Schoonen, A. J. P. Smolders, K. F. Ettwig, W. I. C. Rijpstra, S. Schouten, J. S. S. Damste, H. J. M. Op den Camp, M. S. M. Jetten, and M. Strous. 2006. A microbial consortium couples anaerobic methane oxidation to denitrification. Nature 440:918-921.
-
(2006)
Nature
, vol.440
, pp. 918-921
-
-
Raghoebarsing, A.A.1
Pol, A.2
Van De Pas-Schoonen, K.T.3
Smolders, A.J.P.4
Ettwig, K.F.5
Rijpstra, W.I.C.6
Schouten, S.7
Damste, J.S.S.8
Op Den Camp, H.J.M.9
Jetten, M.S.M.10
Strous, M.11
-
29
-
-
60149104251
-
Renewed growth of atmospheric methane
-
doi:10.1029/2008GL036037
-
Rigby, M., R. G. Prinn, P. J. Fraser, P. G. Simmonds, R. L. Langenfelds, J. Huang, D. M. Cunnold, L. P. Steele, P. B. Krummel, R. F. Weiss, S. O'Doherty, P. K. Salameh, H. J. Wang, C. M. Harth, J. Muhle, and L. W. Porter. 2008. Renewed growth of atmospheric methane. Geophys. Res. Lett. 35:L22805. doi:10.1029/2008GL036037.
-
(2008)
Geophys. Res. Lett.
, vol.35
, pp. 22805
-
-
Rigby, M.1
Prinn, R.G.2
Fraser, P.J.3
Simmonds, P.G.4
Langenfelds, R.L.5
Huang, J.6
Cunnold, D.M.7
Steele, L.P.8
Krummel, P.B.9
Weiss, R.F.10
O'Doherty, S.11
Salameh, P.K.12
Wang, H.J.13
Harth, C.M.14
Muhle, J.15
Porter, L.W.16
-
31
-
-
33645461250
-
Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples
-
Smith, C. J., D. B. Nedwell, L. F. Dong, and A. M. Osborn. 2006. Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environ. Microbiol. 8:804-815.
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 804-815
-
-
Smith, C.J.1
Nedwell, D.B.2
Dong, L.F.3
Osborn, A.M.4
-
32
-
-
0025918929
-
In situ measurement of methane oxidation in groundwater by using natural-gradient tracer tests
-
Smith, R. L., B. L. Howes, and S. P. Garabedian. 1991. In situ measurement of methane oxidation in groundwater by using natural-gradient tracer tests. Appl. Environ. Microbiol. 57:1997-2004.
-
(1991)
Appl. Environ. Microbiol.
, vol.57
, pp. 1997-2004
-
-
Smith, R.L.1
Howes, B.L.2
Garabedian, S.P.3
-
33
-
-
0003341851
-
Development and application of nucleic acid probes
-
E. Stackebrandt and M. Goodfellow (ed.), John Wiley, Chichester, United Kingdom
-
Stahl, D. A., and R. Amann. 1991. Development and application of nucleic acid probes, p. 205-248. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley, Chichester, United Kingdom.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 205-248
-
-
Stahl, D.A.1
Amann, R.2
-
34
-
-
0031762559
-
The sequencing batch reactor as a powerful tool for the study of slowly growing anaerobic ammonium-oxidizing microorganisms
-
Strous, M., J. J. Heijnen, J. G. Kuenen, and M. S. M. Jetten. 1998. The sequencing batch reactor as a powerful tool for the study of slowly growing anaerobic ammonium-oxidizing microorganisms. Appl. Microbiol. Biotechnol. 50:589-596.
-
(1998)
Appl. Microbiol. Biotechnol.
, vol.50
, pp. 589-596
-
-
Strous, M.1
Heijnen, J.J.2
Kuenen, J.G.3
Jetten, M.S.M.4
-
35
-
-
0001804163
-
Microelectrode measurements of nitrate gradients in the littoral and profundal sediments of a meso-eutrophic lake (Lake Vechten, the Netherlands)
-
Sweerts, J. P. R. A., and D. de Beer. 1989. Microelectrode measurements of nitrate gradients in the littoral and profundal sediments of a meso-eutrophic lake (Lake Vechten, The Netherlands). Appl. Environ. Microbiol. 55:754-757.
-
(1989)
Appl. Environ. Microbiol.
, vol.55
, pp. 754-757
-
-
Sweerts, J.P.R.A.1
De Beer, D.2
-
36
-
-
34547781750
-
MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
38
-
-
52949118049
-
Enrichment and characterization of marine anammox bacteria associated with global nitrogen gas production
-
van de Vossenberg, J., J. E. Rattray, W. Geerts, B. Kartal, L. van Niftrik, E. G. van Donselaar, J. S. S. Damste, M. Strous, and M. S. M. Jetten. 2008. Enrichment and characterization of marine anammox bacteria associated with global nitrogen gas production. Environ. Microbiol. 10:3120-3129.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 3120-3129
-
-
Van De Vossenberg, J.1
Rattray, J.E.2
Geerts, W.3
Kartal, B.4
Van Niftrik, L.5
Van Donselaar, E.G.6
Damste, J.S.S.7
Strous, M.8
Jetten, M.S.M.9
|