메뉴 건너뛰기




Volumn 77, Issue 17, 2011, Pages 6305-6309

Potential of pmoA amplicon pyrosequencing for methanotroph diversity studies

Author keywords

[No Author keywords available]

Indexed keywords

AMPLICONS; CLONE LIBRARY; CUT-OFF VALUE; METHANOTROPHS; OPERATIONAL TAXONOMIC UNITS; PADDY SOILS; PYROSEQUENCING; SANGER SEQUENCING; WELL-COVERED;

EID: 80052782154     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.05355-11     Document Type: Article
Times cited : (131)

References (29)
  • 1
    • 48249112161 scopus 로고    scopus 로고
    • Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2.
    • Baani, M., and W. Liesack. 2008. Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2. Proc. Natl. Acad. Sci. U. S. A. 105:10203-10208.
    • (2008) Proc. Natl. Acad. Sci. , vol.105 , pp. 10203-10208
    • Baani, M.1    Liesack, W.2
  • 2
    • 79955057814 scopus 로고    scopus 로고
    • Examining the global distribution of dominant archaeal populations in soil
    • 18 November 2010, posting date. [Epub ahead of print.] doi:10.1038/ismej.2010.171.
    • Bates, S. T., et al. 18 November 2010, posting date. Examining the global distribution of dominant archaeal populations in soil. ISME J. [Epub ahead of print.] doi:10.1038/ismej.2010.171.
    • ISME J
    • Bates, S.T.1
  • 3
    • 79551476785 scopus 로고    scopus 로고
    • Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions
    • Behnke, A., et al. 2011. Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions. Environ. Microbiol. 13:340-349.
    • (2011) Environ. Microbiol. , vol.13 , pp. 340-349
    • Behnke, A.1
  • 4
    • 0027084027 scopus 로고
    • Kinetics of CH 4 oxidation in oxic soils exposed to ambient air or high CH 4 mixing ratios
    • Bender, M., and R. Conrad. 1992. Kinetics of CH 4 oxidation in oxic soils exposed to ambient air or high CH 4 mixing ratios. FEMS Microbiol. Lett. 101:261-270.
    • (1992) FEMS Microbiol. Lett. , vol.101 , pp. 261-270
    • Bender, M.1    Conrad, R.2
  • 5
    • 67349256873 scopus 로고    scopus 로고
    • Chronosequential changes of selected pedogenic properties in paddy soils as compared with non-paddy soils
    • Cheng, Y. Q., L. Z. Yang, Z. H. Cao, E. Ci, and S. X. Yin. 2009. Chronosequential changes of selected pedogenic properties in paddy soils as compared with non-paddy soils. Geoderma 151:31-41.
    • (2009) Geoderma , vol.151 , pp. 31-41
    • Cheng, Y.Q.1    Yang, L.Z.2    Cao, Z.H.3    Ci, E.4    Yin, S.X.5
  • 6
    • 0032746991 scopus 로고    scopus 로고
    • Molecular characterization of functional and phylogenetic genes from natural populations of methanotrophs in lake sediments
    • Costello, A. M., and M. E. Lidstrom. 1999. Molecular characterization of functional and phylogenetic genes from natural populations of methanotrophs in lake sediments. Appl. Environ. Microbiol. 65:5066-5074.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5066-5074
    • Costello, A.M.1    Lidstrom, M.E.2
  • 7
    • 0034075034 scopus 로고    scopus 로고
    • Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine-pathway methanotrophs
    • Dedysh, S. N., et al. 2000. Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine-pathway methanotrophs. Int. J. Syst. Evol. Microbiol. 50:955-969.
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 955-969
    • Dedysh, S.N.1
  • 8
    • 77952276202 scopus 로고    scopus 로고
    • Different atmospheric methane-oxidizing communities in European beech and Norway spruce soils
    • Degelmann, D. M., W. Borken, H. L. Drake, and S. Kolb. 2010. Different atmospheric methane-oxidizing communities in European beech and Norway spruce soils. Appl. Environ. Microbiol. 76:3228-3235.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 3228-3235
    • Degelmann, D.M.1    Borken, W.2    Drake, H.L.3    Kolb, S.4
  • 9
    • 27644489500 scopus 로고    scopus 로고
    • Community-level analysis: key genes of aerobic methane oxidation
    • Dumont, M. G., and J. C. Murrell. 2005. Community-level analysis: key genes of aerobic methane oxidation. Environ. Microbiol. 397:413-427.
    • (2005) Environ. Microbiol. , vol.397 , pp. 413-427
    • Dumont, M.G.1    Murrell, J.C.2
  • 10
    • 84890144621 scopus 로고    scopus 로고
    • Greenhouse gas sinks
    • D. S. Reay, N. Hewitt, K. A. Smith, and J. Grace (ed.), Greenhouse gas sinks. CABI Publishing, Wallingford, United Kingdom
    • Dunfield, P. F. 2007. The soil methane sink, p. 152-170. In D. S. Reay, N. Hewitt, K. A. Smith, and J. Grace (ed.), Greenhouse gas sinks. CABI Publishing, Wallingford, United Kingdom.
    • (2007) The soil methane sink , pp. 152-170
    • Dunfield, P.F.1
  • 11
    • 36849030274 scopus 로고    scopus 로고
    • Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia
    • Dunfield, P. F., et al. 2007. Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature 450:879-882.
    • (2007) Nature , vol.450 , pp. 879-882
    • Dunfield, P.F.1
  • 12
    • 77952672526 scopus 로고    scopus 로고
    • Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments
    • Hollister, E. B., et al. 2010. Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments. ISME J. 4:829-838.
    • (2010) ISME J , vol.4 , pp. 829-838
    • Hollister, E.B.1
  • 13
    • 0028791540 scopus 로고
    • Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related
    • Holmes, A. J., A. Costello, M. E. Lidstrom, and J. C. Murrell. 1995. Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related. FEMS Microbiol. Lett. 132:203-208.
    • (1995) FEMS Microbiol. Lett. , vol.132 , pp. 203-208
    • Holmes, A.J.1    Costello, A.2    Lidstrom, M.E.3    Murrell, J.C.4
  • 14
    • 77955251092 scopus 로고    scopus 로고
    • Ironing out the wrinkles in the rare biosphere through improved OTU clustering
    • Huse, S. M., D. M. Welch, H. G. Morrison, and M. L. Sogin. 2010. Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ. Microbiol. 12:1889-1898.
    • (2010) Environ. Microbiol. , vol.12 , pp. 1889-1898
    • Huse, S.M.1    Welch, D.M.2    Morrison, H.G.3    Sogin, M.L.4
  • 15
    • 80052749473 scopus 로고    scopus 로고
    • Reference deleted
    • Reference deleted.
  • 16
    • 77953326234 scopus 로고    scopus 로고
    • Spatial heterogeneity of methanotrophs: a geostatistical analysis of pmoA-based T-RFLP patterns in a paddy soil
    • Krause, S., C. Lüke, and P. Frenzel. 2009. Spatial heterogeneity of methanotrophs: a geostatistical analysis of pmoA-based T-RFLP patterns in a paddy soil. Environ. Microbiol. Rep. 1:393-397.
    • (2009) Environ. Microbiol. Rep. , vol.1 , pp. 393-397
    • Krause, S.1    Lüke, C.2    Frenzel, P.3
  • 17
    • 4644335844 scopus 로고    scopus 로고
    • Molecular diversity of methanotrophs in Transbaikal soda lake sediments and identification of potentially active populations by stable isotope probing
    • Lin, J. L., et al. 2004. Molecular diversity of methanotrophs in Transbaikal soda lake sediments and identification of potentially active populations by stable isotope probing. Environ. Microbiol. 6:1049-1060.
    • (2004) Environ. Microbiol. , vol.6 , pp. 1049-1060
    • Lin, J.L.1
  • 18
    • 2542523843 scopus 로고    scopus 로고
    • ARB: a software environment for sequence data
    • Ludwig, W., et al. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1363-1371
    • Ludwig, W.1
  • 19
    • 77953322073 scopus 로고    scopus 로고
    • Biogeography of wetland rice methanotrophs
    • Lüke, C., et al. 2010. Biogeography of wetland rice methanotrophs. Environ. Microbiol. 12:862-872.
    • (2010) Environ. Microbiol. , vol.12 , pp. 862-872
    • Lüke, C.1
  • 20
    • 78649704686 scopus 로고    scopus 로고
    • Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia
    • Op den Camp, H. J. M., et al. 2009. Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia. Environ. Microbiol. Rep. 1:293-306.
    • (2009) Environ. Microbiol. Rep. , vol.1 , pp. 293-306
    • Op den Camp, H.J.M.1
  • 21
    • 69549112742 scopus 로고    scopus 로고
    • Accurate determination of microbial diversity from 454 pyrosequencing data
    • Quince, C., et al. 2009. Accurate determination of microbial diversity from 454 pyrosequencing data. Nat. Methods 6:639-641.
    • (2009) Nat. Methods , vol.6 , pp. 639-641
    • Quince, C.1
  • 22
    • 84950632109 scopus 로고
    • Objective criteria for evaluation of clustering methods
    • Rand, W. M. 1971. Objective criteria for evaluation of clustering methods. J. Am. Stat. Assoc. 66:846-850.
    • (1971) J. Am. Stat. Assoc. , vol.66 , pp. 846-850
    • Rand, W.M.1
  • 23
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss, P. D., et al. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75:7537-7541.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 7537-7541
    • Schloss, P.D.1
  • 25
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure, J., and H. L. Ji. 2008. Next-generation DNA sequencing. Nat. Biotechnol. 26:1135-1145.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.L.2
  • 26
    • 0345627977 scopus 로고    scopus 로고
    • Methane flux from irrigated paddy and dryland rice fields, and from seasonally dry tropical forest and savanna soils of India
    • Singh, J. S., A. S. Raghubanshi, V. S. Reddy, S. Singh, and A. K. Kashyap. 1998. Methane flux from irrigated paddy and dryland rice fields, and from seasonally dry tropical forest and savanna soils of India. Soil Biol. Biochem. 30:135-139.
    • (1998) Soil Biol. Biochem. , vol.30 , pp. 135-139
    • Singh, J.S.1    Raghubanshi, A.S.2    Reddy, V.S.3    Singh, S.4    Kashyap, A.K.5
  • 27
    • 77951498451 scopus 로고    scopus 로고
    • Distributions of putative aerobic methanotrophs in diverse pelagic marine environments
    • Tavormina, P. L., W. Ussler, S. B. Joye, B. K. Harrison, and V. J. Orphan. 2010. Distributions of putative aerobic methanotrophs in diverse pelagic marine environments. ISME J. 4:700-710.
    • (2010) ISME J , vol.4 , pp. 700-710
    • Tavormina, P.L.1    Ussler, W.2    Joye, S.B.3    Harrison, B.K.4    Orphan, V.J.5
  • 28
    • 79953747793 scopus 로고    scopus 로고
    • A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs
    • Tavormina, P. L., V. J. Orphan, M. G. Kalyuzhnaya, M. S. M. Jetten, and M. G. Klotz. 2011. A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs. Environ. Microbiol. Rep. 3:91-100.
    • (2011) Environ. Microbiol. Rep. , vol.3 , pp. 91-100
    • Tavormina, P.L.1    Orphan, V.J.2    Kalyuzhnaya, M.G.3    Jetten, M.S.M.4    Klotz, M.G.5
  • 29
    • 79960099987 scopus 로고    scopus 로고
    • Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium possessing only a soluble methane monooxygenase
    • 19 November 2010, posting date. [Epub ahead of print.] doi:10.1099/ijs.0.028118-0
    • Vorobev, A. V., et al. 19 November 2010, posting date. Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium possessing only a soluble methane monooxygenase. Int. J. Syst. Evol. Microbiol. [Epub ahead of print.] doi:10.1099/ijs.0.028118-0.
    • Int. J. Syst. Evol. Microbiol
    • Vorobev, A.V.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.