메뉴 건너뛰기




Volumn 5, Issue FEB, 2014, Pages

Evolvability and robustness in populations of RNA virus Φ6

Author keywords

Bacteriophage; Evolvability; Experimental evolution; Genetic robustness; Thermotolerance

Indexed keywords

GENOMIC RNA; PROTEIN P5; UNCLASSIFIED DRUG; VIRUS PROTEIN; VIRUS RNA;

EID: 84897648142     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2014.00035     Document Type: Article
Times cited : (16)

References (40)
  • 1
    • 30844446303 scopus 로고    scopus 로고
    • Long-term transmission of defective RNA viruses in humans and Aedes mosquitoes
    • doi: 10.1126/science.1115030
    • Aaskov, J., Buzacott, K., Thu, H., Lowry, K., and Holmes, E. (2006). Long-term transmission of defective RNA viruses in humans and Aedes mosquitoes. Science 311, 236. doi: 10.1126/science.1115030
    • (2006) Science , vol.311 , pp. 236
    • Aaskov, J.1    Buzacott, K.2    Thu, H.3    Lowry, K.4    Holmes, E.5
  • 2
    • 0034667684 scopus 로고    scopus 로고
    • Plasticity, evolvability, and modularity in RNA
    • doi: 10.1002/1097-010X(20001015)288:3<242::AID-JEZ5>3.0.CO;2-O
    • Ancel, L. W., and Fontana, W. (2000). Plasticity, evolvability, and modularity in RNA. J. Exp. Zool. 288, 242-283. doi: 10.1002/1097-010X(20001015)288:3<242::AID-JEZ5>3.0.CO;2-O
    • (2000) J. Exp. Zool. , vol.288 , pp. 242-283
    • Ancel, L.W.1    Fontana, W.2
  • 4
    • 45849093668 scopus 로고    scopus 로고
    • Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
    • doi: 10.1073/pnas.0803151105
    • Blount, Z., Borland, C., and Lenski, R. (2008). Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 105, 7899-7906. doi: 10.1073/pnas.0803151105
    • (2008) Proc. Natl. Acad. Sci. U.S.A. , vol.105 , pp. 7899-7906
    • Blount, Z.1    Borland, C.2    Lenski, R.3
  • 5
    • 33847247125 scopus 로고    scopus 로고
    • Theory of lethal mutagenesis for viruses
    • doi: 10.1128/JVI.01624-06
    • Bull, J. J., Sanjuán, R., and Wilke, C. O. (2007). Theory of lethal mutagenesis for viruses. J. Virol. 81, 2930-2939. doi: 10.1128/JVI.01624-06
    • (2007) J. Virol. , vol.81 , pp. 2930-2939
    • Bull, J.J.1    Sanjuán, R.2    Wilke, C.O.3
  • 6
    • 0033055004 scopus 로고    scopus 로고
    • Evolution by small steps and rugged landscapes in the RNA virus phi6
    • Burch, C. L., and Chao, L. (1999). Evolution by small steps and rugged landscapes in the RNA virus phi6. Genetics 151, 921-927.
    • (1999) Genetics , vol.151 , pp. 921-927
    • Burch, C.L.1    Chao, L.2
  • 7
    • 0034632830 scopus 로고    scopus 로고
    • Evolvability of an RNA virus is determined by its mutational neighbourhood
    • doi: 10.1038/35020564
    • Burch, C. L., and Chao, L. (2000). Evolvability of an RNA virus is determined by its mutational neighbourhood. Nature 406, 625-628. doi: 10.1038/35020564
    • (2000) Nature , vol.406 , pp. 625-628
    • Burch, C.L.1    Chao, L.2
  • 8
    • 46449120581 scopus 로고    scopus 로고
    • Virus attenuation by genome-scale changes in codon pair bias
    • doi: 10.1126/science.1155761
    • Coleman, J. R., Papamichail, D., Skiena, S., Futcher, B., Wimmer, E., and Mueller, S. (2008). Virus attenuation by genome-scale changes in codon pair bias. Science 320, 1784-1787. doi: 10.1126/science.1155761
    • (2008) Science , vol.320 , pp. 1784-1787
    • Coleman, J.R.1    Papamichail, D.2    Skiena, S.3    Futcher, B.4    Wimmer, E.5    Mueller, S.6
  • 9
    • 70349215645 scopus 로고    scopus 로고
    • A genetic background with low mutational robustness is associated with increased adaptability to a novel host in an RNA virus
    • doi: 10.1111/j.1420-9101.2009.01817.x
    • Cuevas, J. M., Moya, A., and Sanjuán, R. (2009). A genetic background with low mutational robustness is associated with increased adaptability to a novel host in an RNA virus. J. Evol. Biol. 22, 2041-2048. doi: 10.1111/j.1420-9101.2009.01817.x
    • (2009) J. Evol. Biol. , vol.22 , pp. 2041-2048
    • Cuevas, J.M.1    Moya, A.2    Sanjuán, R.3
  • 10
    • 84882764384 scopus 로고    scopus 로고
    • Frequent coinfection reduces RNA virus population genetic diversity
    • doi: 10.1093/jhered/est038
    • Dennehy, J. J., Duffy, S., O'Keefe, K. J., Edwards, S. V., and Turner, P. E. (2013). Frequent coinfection reduces RNA virus population genetic diversity. J. Hered. 104, 704-712. doi: 10.1093/jhered/est038
    • (2013) J. Hered. , vol.104 , pp. 704-712
    • Dennehy, J.J.1    Duffy, S.2    O'Keefe, K.J.3    Edwards, S.V.4    Turner, P.E.5
  • 11
    • 84870678336 scopus 로고    scopus 로고
    • Selective pressure causes an RNA virus to trade reproductive fitness for increased structural and thermal stability of a viral enzyme
    • doi: 10.1371/journal.pgen.1003102
    • Dessau, M., Goldhill, D., McBride, R. C., Turner, P. E., and Modis, Y. (2012). Selective pressure causes an RNA virus to trade reproductive fitness for increased structural and thermal stability of a viral enzyme. PLoS Genet. 8:e1003102. doi: 10.1371/journal.pgen.1003102
    • (2012) PLoS Genet. , vol.8
    • Dessau, M.1    Goldhill, D.2    McBride, R.C.3    Turner, P.E.4    Modis, Y.5
  • 12
    • 10744228524 scopus 로고    scopus 로고
    • Perspective: evolution and detection of genetic robustness
    • doi: 10.1554/02-750R
    • de Visser, J., Hermisson, J., Wagner, G., Meyers, L., Bagheri, H., Blanchard, J., et al. (2003). Perspective: evolution and detection of genetic robustness. Evolution 57, 1959-1972. doi: 10.1554/02-750R
    • (2003) Evolution , vol.57 , pp. 1959-1972
    • de Visser, J.1    Hermisson, J.2    Wagner, G.3    Meyers, L.4    Bagheri, H.5    Blanchard, J.6
  • 13
    • 75149186552 scopus 로고    scopus 로고
    • Mutational robustness can facilitate adaptation
    • doi: 10.1038/nature08694
    • Draghi, J. A., Parsons, T. L., Wagner, G. P., and Plotkin, J. B. (2010). Mutational robustness can facilitate adaptation. Nature 463, 353-355. doi: 10.1038/nature08694
    • (2010) Nature , vol.463 , pp. 353-355
    • Draghi, J.A.1    Parsons, T.L.2    Wagner, G.P.3    Plotkin, J.B.4
  • 14
    • 40849097775 scopus 로고    scopus 로고
    • Rates of evolutionary change in viruses: patterns and determinants
    • doi: 10.1038/nrg2323
    • Duffy, S., Shackelton, L. A., and Holmes, E. C. (2008). Rates of evolutionary change in viruses: patterns and determinants. Nat. Rev. Genet. 9, 267-276. doi: 10.1038/nrg2323
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 267-276
    • Duffy, S.1    Shackelton, L.A.2    Holmes, E.C.3
  • 15
    • 84867403182 scopus 로고    scopus 로고
    • RNA virus genetic robustness: possible causes and some consequences
    • doi: 10.1016/j.coviro.2012.06.008
    • Elena, S. F. (2012). RNA virus genetic robustness: possible causes and some consequences. Curr. Opin. Virol. 2, 525-530. doi: 10.1016/j.coviro.2012.06.008
    • (2012) Curr. Opin. Virol. , vol.2 , pp. 525-530
    • Elena, S.F.1
  • 16
    • 57049098631 scopus 로고    scopus 로고
    • The effect of genetic robustness on evolvability in digital organisms
    • doi: 10.1186/1471-2148-8-284
    • Elena, S. F., and Sanjuán, R. (2008). The effect of genetic robustness on evolvability in digital organisms. BMC Evol. Biol. 8:284. doi: 10.1186/1471-2148-8-284
    • (2008) BMC Evol. Biol. , vol.8 , pp. 284
    • Elena, S.F.1    Sanjuán, R.2
  • 17
    • 5144231912 scopus 로고    scopus 로고
    • Co-infection weakens selection against epistatic mutations in RNA viruses
    • doi: 10.1534/genetics.104.030205
    • Froissart, R., Wilke, C. O., Montville, R., Remold, S. K., Chao, L., and Turner, P. E. (2004). Co-infection weakens selection against epistatic mutations in RNA viruses. Genetics 168, 9-19. doi: 10.1534/genetics.104.030205
    • (2004) Genetics , vol.168 , pp. 9-19
    • Froissart, R.1    Wilke, C.O.2    Montville, R.3    Remold, S.K.4    Chao, L.5    Turner, P.E.6
  • 18
    • 67849128666 scopus 로고    scopus 로고
    • Complementation and epistasis in viral coinfection dynamics
    • doi: 10.1534/genetics.108.099796
    • Gao, H., and Feldman, M. W. (2009). Complementation and epistasis in viral coinfection dynamics. Genetics 182, 251-263. doi: 10.1534/genetics.108.099796
    • (2009) Genetics , vol.182 , pp. 251-263
    • Gao, H.1    Feldman, M.W.2
  • 20
    • 84869189162 scopus 로고    scopus 로고
    • Codon usage determines the mutational robustness, evolutionary capacity, and virulence of an RNA virus
    • doi: 10.1016/j.chom.2012.10.008
    • Lauring, A. S., Acevedo, A., Cooper, S. B., and Andino, R. (2012). Codon usage determines the mutational robustness, evolutionary capacity, and virulence of an RNA virus. Cell Host Microbe 12, 623-632. doi: 10.1016/j.chom.2012.10.008
    • (2012) Cell Host Microbe , vol.12 , pp. 623-632
    • Lauring, A.S.1    Acevedo, A.2    Cooper, S.B.3    Andino, R.4
  • 21
    • 77955844575 scopus 로고    scopus 로고
    • Robustness and evolvability
    • doi: 10.1016/j.tig.2010.06.002
    • Masel, J., and Trotter, M. V. (2010). Robustness and evolvability. Trends Genet. 26, 406-414. doi: 10.1016/j.tig.2010.06.002
    • (2010) Trends Genet. , vol.26 , pp. 406-414
    • Masel, J.1    Trotter, M.V.2
  • 22
    • 50049135016 scopus 로고    scopus 로고
    • Robustness promotes evolvability of thermotolerance in an RNA virus
    • doi: 10.1186/1471-2148-8-231
    • McBride, R., Ogbunugafor, C., and Turner, P. (2008). Robustness promotes evolvability of thermotolerance in an RNA virus. BMC Evol. Biol. 8:231. doi: 10.1186/1471-2148-8-231
    • (2008) BMC Evol. Biol. , vol.8 , pp. 231
    • McBride, R.1    Ogbunugafor, C.2    Turner, P.3
  • 23
    • 2942652397 scopus 로고    scopus 로고
    • The robustness of naturally and artificially selected nucleic acid secondary structures
    • doi: 10.1007/s00239-004-2590-2
    • Meyers, L. A., Lee, J. F., Cowperthwaite, M., and Ellington, A. D. (2004). The robustness of naturally and artificially selected nucleic acid secondary structures. J. Mol. Evol. 58, 681-691. doi: 10.1007/s00239-004-2590-2
    • (2004) J. Mol. Evol. , vol.58 , pp. 681-691
    • Meyers, L.A.1    Lee, J.F.2    Cowperthwaite, M.3    Ellington, A.D.4
  • 24
    • 0018386121 scopus 로고
    • Cell wall lysin as a component of the bacteriophage phi 6 virion
    • Mindich, L., and Lehman, J. (1979). Cell wall lysin as a component of the bacteriophage phi 6 virion. J. Virol. 30, 489-496.
    • (1979) J. Virol. , vol.30 , pp. 489-496
    • Mindich, L.1    Lehman, J.2
  • 25
    • 27844567907 scopus 로고    scopus 로고
    • Evolution of mutational robustness in an RNA virus
    • doi: 10.1371/journal.pbio.0030381
    • Montville, R., Froissart, R., Remold, S. K., Tenaillon, O., and Turner, P. E. (2005). Evolution of mutational robustness in an RNA virus. PLoS Biol. 3:e381. doi: 10.1371/journal.pbio.0030381
    • (2005) PLoS Biol. , vol.3
    • Montville, R.1    Froissart, R.2    Remold, S.K.3    Tenaillon, O.4    Turner, P.E.5
  • 26
    • 84876336106 scopus 로고    scopus 로고
    • Congruent evolution of fitness and genetic robustness in VSV
    • doi: 10.1128/JVI.02796-12
    • Novella, I. S., Presloid, J. B., Beech, C., and Wilke, C. O. (2013). Congruent evolution of fitness and genetic robustness in VSV. J. Virol. 87, 4923-4928. doi: 10.1128/JVI.02796-12
    • (2013) J. Virol. , vol.87 , pp. 4923-4928
    • Novella, I.S.1    Presloid, J.B.2    Beech, C.3    Wilke, C.O.4
  • 27
    • 77957726563 scopus 로고    scopus 로고
    • Predicting virus evolution: the relationship between genetic robustness and evolvability of thermotolerance
    • doi: 10.1101/sqb.2009.74.023
    • Ogbunugafor, C. B., McBride, R. C., and Turner, P. E. (2009). Predicting virus evolution: the relationship between genetic robustness and evolvability of thermotolerance. Cold Spring Harb. Symp. Quant. Biol. 74, 109-118. doi: 10.1101/sqb.2009.74.023
    • (2009) Cold Spring Harb. Symp. Quant. Biol. , vol.74 , pp. 109-118
    • Ogbunugafor, C.B.1    McBride, R.C.2    Turner, P.E.3
  • 28
    • 77954476569 scopus 로고    scopus 로고
    • On the possible role of robustness in the evolution of infectious diseases
    • doi: 10.1063/1.3455189
    • Ogbunugafor, C. B., Pease, J. B., and Turner, P. E. (2010). On the possible role of robustness in the evolution of infectious diseases. Chaos 20, 026108. doi: 10.1063/1.3455189
    • (2010) Chaos , vol.20 , pp. 026108
    • Ogbunugafor, C.B.1    Pease, J.B.2    Turner, P.E.3
  • 29
    • 84869139621 scopus 로고    scopus 로고
    • Understanding specialism when the jack of all trades can be the master of all
    • doi: 10.1098/rspb.2012.1990
    • Remold, S. (2012). Understanding specialism when the jack of all trades can be the master of all. Proc. R. Soc. B Biol. Sci. 279, 4861-4869. doi: 10.1098/rspb.2012.1990
    • (2012) Proc. R. Soc. B Biol. Sci. , vol.279 , pp. 4861-4869
    • Remold, S.1
  • 30
    • 34347327212 scopus 로고    scopus 로고
    • Selection for robustness in mutagenized RNA viruses
    • doi: 10.1371/journal.pgen.0030093
    • Sanjuán, R., Cuevas, J. M., Furió, V., Holmes, E. C., and Moya, A. (2007). Selection for robustness in mutagenized RNA viruses. PLoS Genet. 3:e93. doi: 10.1371/journal.pgen.0030093
    • (2007) PLoS Genet. , vol.3
    • Sanjuán, R.1    Cuevas, J.M.2    Furió, V.3    Holmes, E.C.4    Moya, A.5
  • 31
    • 84872198240 scopus 로고    scopus 로고
    • Predictability of evolution depends nonmonotonically on population size
    • doi: 10.1073/pnas.1213613110
    • Szendro, I. G., and Franke, J. (2013). Predictability of evolution depends nonmonotonically on population size. Proc. Natl. Acad. Sci. U.S.A. 110, 571-576. doi: 10.1073/pnas.1213613110
    • (2013) Proc. Natl. Acad. Sci. U.S.A. , vol.110 , pp. 571-576
    • Szendro, I.G.1    Franke, J.2
  • 33
    • 40149099484 scopus 로고    scopus 로고
    • How protein stability and new functions trade off
    • doi: 10.1371/journal.pcbi.1000002
    • Tokuriki, N., Stricher, F., and Serrano, L. (2008). How protein stability and new functions trade off. PLoS Comput. Biol. 4:e1000002. doi: 10.1371/journal.pcbi.1000002
    • (2008) PLoS Comput. Biol. , vol.4
    • Tokuriki, N.1    Stricher, F.2    Serrano, L.3
  • 34
    • 64849101493 scopus 로고    scopus 로고
    • Protein dynamism and evolvability
    • doi: 10.1126/science.1169375
    • Tokuriki, N., and Tawfik, D. S. (2009). Protein dynamism and evolvability. Science 324, 203-207. doi: 10.1126/science.1169375
    • (2009) Science , vol.324 , pp. 203-207
    • Tokuriki, N.1    Tawfik, D.S.2
  • 35
    • 0031684017 scopus 로고    scopus 로고
    • Sex and the evolution of intrahost competition in RNA virus phi 6
    • Turner, P. E., and Chao, L. (1998). Sex and the evolution of intrahost competition in RNA virus phi 6. Genetics 150, 523-532.
    • (1998) Genetics , vol.150 , pp. 523-532
    • Turner, P.E.1    Chao, L.2
  • 36
    • 0034535109 scopus 로고    scopus 로고
    • Cost of host radiation in an RNA virus
    • Turner, P. E., and Elena, S. (2000). Cost of host radiation in an RNA virus. Genetics 156, 1465-1470.
    • (2000) Genetics , vol.156 , pp. 1465-1470
    • Turner, P.E.1    Elena, S.2
  • 37
    • 36348992094 scopus 로고    scopus 로고
    • Robustness and evolvability: a paradox resolved
    • doi: 10.1098/rspb.2007.1137
    • Wagner, A. (2008). Robustness and evolvability: a paradox resolved. Proc. R. Soc. B Biol. Sci. 275, 91-100. doi: 10.1098/rspb.2007.1137
    • (2008) Proc. R. Soc. B Biol. Sci. , vol.275 , pp. 91-100
    • Wagner, A.1
  • 39
    • 84884512535 scopus 로고    scopus 로고
    • On the biological success of viruses
    • doi: 10.1146/annurev-micro-090110-102833
    • Wasik, B. R., and Turner, P. E. (2013). On the biological success of viruses. Annu. Rev. Microbiol. 67, 519-541. doi: 10.1146/annurev-micro-090110-102833
    • (2013) Annu. Rev. Microbiol. , vol.67 , pp. 519-541
    • Wasik, B.R.1    Turner, P.E.2
  • 40
    • 0037469371 scopus 로고    scopus 로고
    • Evolution of mutational robustness
    • doi: 10.1016/S0027-5107(02)00307-X
    • Wilke, C., and Adami, C. (2003). Evolution of mutational robustness. Mutat. Res. 522, 3-11. doi: 10.1016/S0027-5107(02)00307-X
    • (2003) Mutat. Res. , vol.522 , pp. 3-11
    • Wilke, C.1    Adami, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.