Histone H3 lysine 4 trimethylation regulates cotranscriptional H2A variant exchange by Tip60 complexes to maximize gene expression

Proceedings of the National Academy of Sciences of the United States of America

Volumn 111, Issue 13, 2014, Pages 4850-4855

  Kusch, Thomas ^a   Mei, Amanda ^a   Nguyen, Camtu ^a  

^a RUTGERS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACYLTRANSFERASE; HEAT SHOCK PROTEIN 70; HISTONE H3; HISTONE H3 LYSINE 4; MESSENGER RNA; SALICYLIC ACID; UNCLASSIFIED DRUG;

ARTICLE; CELL SURVIVAL; CHROMATIN; CHROMATIN ASSEMBLY AND DISASSEMBLY; DROSOPHILA; EPIGENETICS; GENE EXPRESSION; GENETIC VARIABILITY; HISTONE ACETYLATION; NONHUMAN; NUCLEOSOME; PRIORITY JOURNAL; PROMOTER REGION; STRESS; TRANSCRIPTION INITIATION;

ACETYLATION; ANIMALS; DNA POLYMERASE II; DNA-BINDING PROTEINS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; GENE EXPRESSION REGULATION; GENETIC LOCI; HISTONE ACETYLTRANSFERASES; HISTONE-LYSINE N-METHYLTRANSFERASE; HISTONES; HSP70 HEAT-SHOCK PROTEINS; LYSINE; METHYLATION; MODELS, BIOLOGICAL; MULTIPROTEIN COMPLEXES; NUCLEOSOMES; PROMOTER REGIONS, GENETIC; PROTEIN BINDING; RNA, MESSENGER; TRANSCRIPTION FACTORS; TRANSCRIPTION INITIATION SITE; TRANSCRIPTION, GENETIC; TRANSCRIPTIONAL ACTIVATION;

EID: 84897516401     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1320337111     Document Type: Article

References (28)

1. Kouzarides T (2007) Chromatin modifications and their function. Cell 128(4):693-705.
2. Kusch T, Workman JL (2007) Histone variants and complexes involved in their exchange. Subcell Biochem 41:91-109.
3. Taverna SD, Li H, Ruthenburg AJ, Allis CD, Patel DJ (2007) How chromatin-binding modules interpret histone modifications: Lessons from professional pocket pickers. Nat Struct Mol Biol 14(11):1025-1040.
4. Jin J, et al. (2005) In and out: Histone variant exchange in chromatin. Trends Biochem Sci 30(12):680-687.
5. Kusch T (2012) Histone H3 lysine 4 methylation revisited. Transcription 3(6):310-314.
6. Jin C, et al. (2009) H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome- free regions' of active promoters and other regulatory regions. Nat Genet 41(8): 941-945.
7. Altaf M, Auger A, Covic M, Côté J (2009) Connection between histone H2A variants and chromatin remodeling complexes. Biochem Cell Biol 87(1):35-50.
8. Kusch T, et al. (2004) Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions. Science 306(5704):2084-2087.
9. Ardehali MB, et al. (2011) Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription. EMBO J 30(14):2817-2828.
10. Petesch SJ, Lis JT (2012) Activator-induced spread of poly(ADP-ribose) polymerase promotes nucleosome loss at Hsp70. Mol Cell 45(1):64-74.
11. Winegarden NA, Wong KS, Sopta M, Westwood JT (1996) Sodium salicylate decreases intracellular ATP, induces both heat shock factor binding and chromosomal puffing, but does not induce hsp 70 gene transcription in Drosophila. J Biol Chem 271(43): 26971-26980.
12. Saunders A, et al. (2003) Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo. Science 301(5636):1094-1096.
13. Kusch T, Guelman S, Abmayr SM, Workman JL (2003) Two Drosophila Ada2 homologues function in different multiprotein complexes. Mol Cell Biol 23(9):3305-3319.
14. Schneiderman JI, Orsi GA, Hughes KT, Loppin B, Ahmad K (2012) Nucleosomedepleted chromatin gaps recruit assembly factors for the H3.3 histone variant. Proc Natl Acad Sci USA 109(48):19721-19726.
15. Tanabe M, et al. (2008) Activation of facultatively silenced Drosophila loci associates with increased acetylation of histone H2AvD. Genes Cells 13(12):1279-1288.
16. Sapountzi V, Logan IR, Robson CN (2006) Cellular functions of TIP60. Int J Biochem Cell Biol 38(9):1496-1509.
17. Shi X, et al. (2006) ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression. Nature 442(7098):96-99.
18. Utley RT, Côté J (2003) The MYST family of histone acetyltransferases. Curr Top Microbiol Immunol 274:203-236.
19. Smith ER, et al. (2000) The drosophila MSL complex acetylates histone H4 at lysine 16, a chromatin modification linked to dosage compensation. Mol Cell Biol 20(1): 312-318.
20. Grienenberger A, et al. (2002) The MYST domain acetyltransferase Chameau functions in epigenetic mechanisms of transcriptional repression. Curr Biol 12(9):762-766.
21. Wang Z, et al. (2008) Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet 40(7):897-903.
22. Kotova E, et al. (2011) Drosophila histone H2A variant (H2Av) controls poly(ADPribose) polymerase 1 (PARP1) activation in chromatin. Proc Natl Acad Sci USA 108(15): 6205-6210.
23. Simon MD, et al. (2007) The site-specific installation of methyl-lysine analogs into recombinant histones. Cell 128(5):1003-1012.
24. Hödl M, Basler K (2009) Transcription in the absence of histone H3.3. Curr Biol 19(14): 1221-1226.
25. Pérez-Lluch S, et al. (2011) Genome-wide chromatin occupancy analysis reveals a role for ASH2 in transcriptional pausing. Nucleic Acids Res 39(11):4628-4639.
26. Muramoto T, Müller I, Thomas G, Melvin A, Chubb JR (2010) Methylation of H3K4 Is required for inheritance of active transcriptional states. Curr Biol 20(5):397-406.
27. Selleck W, Fortin I, Sermwittayawong D, Côté J, Tan S (2005) The Saccharomyces cerevisiae Piccolo NuA4 histone acetyltransferase complex requires the Enhancer of Polycomb A domain and chromodomain to acetylate nucleosomes. Mol Cell Biol 25(13):5535-5542.
28. Altaf M, et al. (2010) NuA4-dependent acetylation of nucleosomal histones H4 and H2A directly stimulates incorporation of H2A.Z by the SWR1 complex. J Biol Chem 285(21):15966-15977.