Identification of metabolic pathways expressed by pichia anomalakh6 in the presence of the pathogen botrytis cinereaon apple: New possible targets for biocontrol improvement

PLoS ONE

Volumn 9, Issue 3, 2014, Pages

  Kwasiborski, Anthony ^a   Bajji, Mohammed ^a   Renaut, Jenny ^b   Delaplace, Pierre ^a   Haissam Jijakli, M ^a  

^a UNIVERSITY OF LIÈGE   (Belgium)

^b LUXEMBOURG INSTITUTE OF SCIENCE AND TECHNOLOGY   (Luxembourg)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL PROTEIN; NUCLEIC ACID; PENTOSE PHOSPHATE; PROTEOME;

APPLE; ARTICLE; BOTRYTIS CINEREA; ENERGY METABOLISM; EXTRACTION; FERMENTATION; FUNGAL COLONIZATION; FUNGAL STRAIN; IMAGE ANALYSIS; MASS SPECTROMETRY; METABOLISM; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS; PROTEOMICS; TWO DIMENSIONAL ELECTROPHORESIS; WICKERHAMOMYCES ANOMALUS; BIOLOGICAL PEST CONTROL; BOTRYTIS; GROWTH, DEVELOPMENT AND AGING; MALUS; MICROBIOLOGY; PENTOSE PHOSPHATE CYCLE; PHYSIOLOGY; PICHIA;

BOTRYTIS; FUNGAL PROTEINS; MALUS; METABOLIC NETWORKS AND PATHWAYS; PENTOSE PHOSPHATE PATHWAY; PEST CONTROL, BIOLOGICAL; PICHIA; PROTEOME;

EID: 84897479465     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0091434     Document Type: Article

References (47)

1. Abano EE, Sam-Amoah LK (2012) Application of antagonistic microorganisms for the control of postharvest decays in fruits and vegetables. Int J Adv Biol Res 2: 1-8.
2. Janisiewicz WJ, Korsten L (2002) Biological control of postharvest diseases of fruits. Annu Rev Phytopathol 40: 411-441. (Pubitemid 35235587)
3. Jijakli MH (2011) Pichia anomala in biocontrol for apples: 20 years of fundamental research and practical applications. J Gen Mol Microbiol 99: 93-105.
4. Fravel DR (2005) Commercialization and implementation of biocontrol. Annu Rev Phytopathol 43: 337-359. (Pubitemid 41318876)
5. Droby S, Wisniewski M, Macarisin D, Wilson C (2009) Twenty years of postharvest biocontrol research: Is it time for a new paradigm? Postharvest Biol Tec 52: 137-145.
6. Castoria R, De Curtis F, Lima G, Caputo L, Pacifico S, et al. (2001) Aureobasidium pullulans (LS-30) an antagonist of postharvest pathogens of fruits: study on its modes of action. Postharvest Biol Tec 22: 7-17. (Pubitemid 32224540)
7. Piano S, Neyrotti V, Migheli Q, Gullino ML (1997) Biocontrol capability of Metschnikowia pulcherrima against Botrytis postharvest rot of apple. Postharvest Biol Tec 11: 131-140. (Pubitemid 27308789)
8. Spadaro D, Vola R, Piano S, Gullino ML (2002) Mechanisms of action and efficacy of four isolates of the yeast Metschnikowia pulcherrima active against postharvest pathogens on apples. Postharvest Biol Tec 24: 123-134. (Pubitemid 34253652)
9. Filonow AB (1998) Role of competition for sugars by yeasts in the biocontrol of gray mold of apple. Biocontrol Sci Techn 8: 243-256. (Pubitemid 28332970)
10. Droby S, Chalutz E, Wilson CL, Wisniewski M (1989) Characterization of the biocontrol activity of Debaryomyces hansenii in the control of penicillium digitatum on grapefruit. Can J Microbiol 35: 794-800.
11. Wisniewski M, Wilson C, Hershberger W (1989) Characterization of inhibition of Rhizopus stolonifer germination and growth by Enterobacter cloacae. Can J Botanic 67: 2317-2323.
12. Andrews JH, Harris RF, Spear RN, Lau GW, Nordheim EV (1994) Morphogenesis and adhesion of Aureobasidium pullulans. Can J Microbiol 40: 6-17. (Pubitemid 24126578)
13. Jijakli MH, Lepoivre P (1998) Characterization of an Exo-b-1, 3-Glucanase produced by Pichia anomala Strain K, antagonist of Botrytis cinerea on apples. Phytopathol 88: 335-343. (Pubitemid 28159398)
14. Wisniewski M, Biles C, Droby S, McLaughlin R, Wilson C, et al. (1991) Mode of action of the postharvest biocontrol yeast, Pichia guilliermondii.1. characterization of attachment to Botrytis cinerea. Physiol Mol Plant Pathol 39: 245-258.
15. Spadaro D, Gullino ML (2004) State of the art and future prospects of the biological control of postharvest fruit diseases. Int J Food Microbiol 91: 185-194. (Pubitemid 38230265)
16. Bajji M, Jijakli MH (2009) cDNA-AFLP analysis of Candida oleophila (strain O) genes differentially expressed during the biocontrol of Botrytis cinerea on harvested apples. IOBC/wprs Bulletin 43: 327-330.
17. Jijakli MH, Lepoivre P, Tossut P, Thonart P (1993) Biological control of Botrytis cinerea and Penicillium on postharvest apples by two antagonistic yeasts. Med Fac Landbouwwet, University of Gent 58: 1349-1358.
18. Grevesse C, Lepoivre P, Jijakli MH (2003) Characterization of the Exoglucanase-encoding gene PaEXG2 and study of its role in the biocontrol activity of Pichia anomala Strain K. Phytopathol 93: 1145-1152. (Pubitemid 37029554)
19. Jijakli MH, Lepoivre P, Grevesse C (1999) Yeast species for biocontrol of apples postharvest diseases: an encouraging case of study for practical use. Biotechnol app biocontrol plant path 31-49.
20. Massart S, Jijakli MH (2006) Identification of differentially expressed genes by cDNA-amplified fragment length polymorphism in the biocontrol agent Pichia anomala (Strain Kh5). Phytopathol 96: 80-86. (Pubitemid 43031279)
21. Friel D, Pessoa NMG, Vandenbol M, Jijakli MH (2007) Separate and combined disruptions of two exo-beta-1, 3-glucanase genes decrease the efficiency of Pichia anomala (strain K) biocontrol against Botrytis cinerea on apple. Mol Plant-Microbe In 20: 371-379. (Pubitemid 46449395)
22. Jijakli MH, Lepoivre P (1993) Biological control of postharvest Botrytis cinerea and Penicillium on apples. IOBC/WRPS Bulletin: Biological control of foliar and Post-harvest Diseases 16: 106-110.
23. Gorg A, Weiss W, Dunn MJ (2005) Current two dimensional electrophoresis technology for proteomics. Proteomics 5: 826-827.
24. Marra R, Ambrosino P, Carbone V, Vinale F, Woo SL, et al. (2006) Study of the three-way interaction between Trichoderma atroviride, plant and fungal pathogens by using a proteomic approach. Curr Genet 50: 307-321. (Pubitemid 44613092)
25. Grinyer J, McKay M, Nevalainen H, Herbert BR (2004) Fungal proteomics: initial mapping of biological control strain Trichoderma harzianum. Curr Genet 45: 163-169. (Pubitemid 38351186)
26. Grinyer J, Hunt S, McKay M, Herbert BR, Nevalainen H (2005) Proteomic response of the biological control fungus Trichoderma atroviride to growth on the cell walls of Rhizoctonia solani. Curr Genet 47: 381-388. (Pubitemid 40909176)
27. Kwasiborski A, Bajji M, Delaplace P, Lepoivre P, Jijakli MH (2012) Biocontrol proteomics: Development of an in situ method for a proteomic study of inhibition mechanisms of Pichia anomala against Botrytis cinerea on apple. Biocontrol 57: 837-848.
28. Delaplace P, Wall FVd, Dierick J-F, Cordewener JHG, Fauconnier M-L, et al. (2006) Potato tuber proteomics: Comparison of two complementary extraction methods designed for 2-DE of acidic proteins. Proteomics 6: 6494-6497. (Pubitemid 46048388)
29. Norbeck J, Blomberg A (1997) Two-dimensional electrophoretic separation of yeast proteins using a non-linear wide range (pH 3-10) immobilized pH gradient in the first dimension; reproducibility and evidence for isoelectric focusing of alkaline (pI 7) proteins. Yeast 13: 1519-1534. (Pubitemid 28088081)
30. Barrett AJ, Northcote DH (1965) Apple fruit pectic substances. Biochem J 94: 617-627.
31. Fuge EK, Braun EL, Werner-Washburne M (1994) Protein synthesis in long-term stationary-phase cultures of Saccharomyces cerevisiae. J Bacteriol 176: 5802-5813. (Pubitemid 24280515)
32. Nair N, Zhao H (2007) Biochemical characterization of an L-Xylulose reductase from Neurospora crassa. App Env Microbiol 73: 2001-2004. (Pubitemid 46449085)
33. Matsushika A, Goshima T, Fujii T, Inoue H, Sawayama S, et al. (2012) Characterization of non-oxidative transaldolase and transketolase enzymes in the pentose phosphate pathway with regard to xylose utilization by recombinant Saccharomyces cerevisiae. Enzyme Microb Tech 51: 16-25.
34. Bogonez E, Satrustegui J, Machado A (1985) Regulation by ammonium of glutamate dehydrogenase (NADP+) from Saccharomyces cerevisiae. J Gener Microbiol 131: 1425-1432. (Pubitemid 15013645)
35. Ying W (2007) NAD+/NADH and NADP+/NADPH in cellular functions and cell death: regulation and biological consequences. Antioxid Redox Sign 10: 179-206.
36. Andrew EJ, Merchan S, Lawless C, Banks AP, Wilkinson DJ, et al. (2013) Pentose phosphate pathway function affects tolerance to the g-quadruplex binder TMPyP4. Plos One 8.
37. Borkovich KA, Farrelly FW, Finkelstein DB, Taulien J, Lindquist S (1989) HSP82 is an essential protein that is required in higher concentrations for growth of cells at higher temperatures. Mol Cell Biol 9: 3919-3930. (Pubitemid 19216285)
38. Donoso I, Munoz-Centeno MC, Sanchez-Duran MA, Flores A, Daga RR, et al. (2005) Mpg1, a fission yeast protein required for proper septum structure, is involved in cell cycle progression through cell-size checkpoint. Mol Genet Genomics 274: 155-167. (Pubitemid 41502362)
39. Zakrajsek T, Raspor P, Jamnik P (2011) Saccharomyces cerevisiae in the stationary phase as a model organism-characterization at cellular and proteome level. J Proteomics 74: 2837-2845.
40. Fredlund E, Blank LM, Schnurer J, Sauer U, Passoth V (2004) Oxygen-and glucose-dependent regulation of central carbon metabolism in Pichia anomala. Appl Environ Microb 70: 5905-5911. (Pubitemid 39471834)
41. Fredlund E, Druvefors UA, Olstorpe MN, Passoth V, Schnurer J (2004) Influence of ethyl acetate production and ploidy on the anti-mould activity of Pichia anomala. Fems Microbiol Lett 238: 133-137. (Pubitemid 39164541)
42. Victor J, Greenberg LB, Sloan DL (1979) Studies of the kinetic mechanism of orotate phosphoribosyltransferase from yeast. J Biol Chem 254: 2647-2655.
43. Ter Schure EG, van Riel NAW, Verrips CT (2000) The role of ammonia metabolism in nitrogen catabolite repression in Saccharomyces cerevisiae. Fems Microbiol Rev 24: 67-83. (Pubitemid 30047115)
44. Primerano DA, Burns RO (1983) Role of acetohydroxy acid isomeroreductase in biosynthesis of pantothenic acid in Salmonella typhimurium. J Bacteriol 153: 259-269. (Pubitemid 13119863)
45. Dumas R, Biou V, Halgand F, Douce R, Duggleby RG (2001) Enzymology, structure, and dynamics of acetohydroxy acid isomeroreductase. Accounts Chem Res 34: 399-408. (Pubitemid 32816461)
46. Demianova M, Formosa TG, Ellis SR (1996) Yeast proteins related to the p40/laminin receptor precursor are essential components of the 40 S ribosomal subunit. J Biol Chem 271: 11383-11391. (Pubitemid 26155977)
47. Zanelli CF, Maragno ALC, Gregio APB, Komili S, Pandolfi JR, et al. (2006) eIF5A binds to translational machinery components and affects translation in yeast. Biochem. Bioph. Res. Comm 348: 1358-1366. (Pubitemid 44291350)