Study of the three-way interaction between Trichoderma atroviride, plant and fungal pathogens by using a proteomic approach

Current Genetics

Volumn 50, Issue 5, 2006, Pages 307-321

  Marra, Roberta ^a   Ambrosino, Patrizia ^a   Carbone, Virginia ^b   Vinale, Francesco ^a   Woo, Sheridan L ^a   Ruocco, Michelina ^c   Ciliento, Rosalia ^a   Lanzuise, Stefania ^a   Ferraioli, Simona ^a   Soriente, Ida ^a   Gigante, Sarah ^a   Turrà, David ^a   Fogliano, Vincenzo ^a   Scala, Felice ^c   Lorito, Matteo ^a,c  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

^b CNR   (Italy)

^c CNR   (Italy)

Author keywords

Differential proteins; Fungal pathogens; Plant; Proteomics; Three way interactions; Trichoderma

Indexed keywords

ABC TRANSPORTER; CYCLOPHILIN; FUNGAL PROTEIN; HYDROPHOBIN; PROTEOME; VIRULENCE FACTOR;

BEAN; BOTRYTIS CINEREA; COMPUTER MODEL; CONTROLLED STUDY; FUNGAL STRAIN; FUNGAL VIRULENCE; GENUS; HYPHOMYCETES; MASS SPECTROMETRY; MOLECULAR GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT FUNGUS INTERACTION; PLANT PATHOGEN INTERACTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN ISOLATION; PROTEIN PROTEIN INTERACTION; PROTEOMICS; REVIEW; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; TRICHODERMA; TWO DIMENSIONAL ELECTROPHORESIS; UPREGULATION;

AMINO ACID SEQUENCE; BOTRYTIS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; HOST-PATHOGEN INTERACTIONS; MOLECULAR SEQUENCE DATA; PHASEOLUS; PLANT DISEASES; PROTEOME; PROTEOMICS; RHIZOCTONIA; TRICHODERMA;

BOTRYOTINIA FUCKELIANA; FUNGI; THANATEPHORUS CUCUMERIS; TRICHODERMA; TRICHODERMA ATROVIRIDE;

EID: 33750296845     PISSN: 01728083     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00294-006-0091-0     Document Type: Review

References (67)

1. Arévalo-Rodriguez M, Cardenas ME, Wu X, Hanes SD, Heitman J (2000) Cyclophilin A and Ess1 interact with and regulate silencing by the Sin3-Rpd3 histone deacetylase. EMBO J 19:3739-3749
2. Baker B, Zambryski P, Staskawicz B, Dinesh S (1997) Signalling in plant-microbe interactions. Science 276:726-733
3. Benítez T, Delgado-Jarana J, Rincón AM, Rey M, Limón MC (1998) Biofungicides: Trichoderma as a biocontrol agent against phytopathogenic fungi. In: Pandalai SG (ed) Recent research developments in microbiology, vol 2. Research Signpost, Trivandrum, pp 129-150
4. Benítez T, Rincón AM, Limón MC, Codón AC (2004) Biocontrol mechanisms of Trichoderma strains. Int Microbiol 7:249-260
5. Bigirimana J, De Meyer G, Poppe JE, Hofte M (1997) Induction of systemic resistance on bean (Phaseolus vulgaris) by Trichoderma harzianum. Med Fac Landbouww Univ Gent 62:1001-1007
6. Brunner K, Zeilinger S, Ciliento R, Woo SL, Lorito M, Kubicek CP, Mach RL (2005). Genetic improvement of a fungal biocontrol agent to enhance both antagonism and induction of plant systemic disease resistance. Appl Environ Microbiol 71:3959-3965
7. Cánovas FM, Dumas-Gaudot E, Recorbet G, Jorrin J, Mock H-P, Rossignol M (2004) Plant proteome analysis. Proteomics 4:285-298
8. Chet I (1987) Trichoderma - Application, mode of action, and potential as a biocontrol agent of soil-born pathogenetic fungi. In: Chet I (ed) Innovative approaches to plant disease control. Wiley, New York, pp 137-160
9. Dangl JL, Jones JDG (2001) Plant pathogens and integrated defence responses to infection. Nature 411:826-833
10. De Meyer G, Bigirimana J, Ela Y, Hofte M (1998) Induced systemic resistance in Trichoderma harzianum T39 biocontrol of Botrytis cinerea. Eur J Plant Pathol 104:279-286
11. Fujiwara T, Oda K, Yokota S, Takatsuki A, Ikehara Y (1988) Brefeldin A causes disassembly of the Golgi complex and accumulation of secretory proteins in the endoplasmic reticulum. J Biol Chem 263:18545-18552
12. Gil-ad NL, Bar-Nun N, Noy T, Mayer AM (2000) Enzymes of Botrytis cinerea capable of breaking down hydrogen peroxide. FEMS Microbiol Lett 190:121-126
13. Görg A, Weiss W, Dunn MJ (2004) Current two-dimensional electrophoresis technology for proteomics. Proteomics 4:3665-3685
14. Gothel SF, Marahiel MA (1999) Peptidyl-prolyl cis-trans isomerases, a superfamily of ubiquitous folding catalysts. Cell Mol Life Sci 55:423-436
15. Grinyer J, McKay M, Herbert B, Nevalainen H (2004a) Fungal proteomics: mapping the mitochondrial proteins of a Trichoderma harzianum strain applied for biological control. Curr Genet 45(3):170-175
16. Grinyer J, McKay M, Nevalainen H, Herbert BR (2004b) Fungal proteomics: initial mapping of biological control strain Trichoderma harzianum. Curr Genet 45:163-169
17. Grinyer J, Hunt S, McKay M, Herbert BR, Nevalainen H (2005) Proteomic response of the biological control fungus Trichoderma atroviride to growth on the cell walls of Rhizoctonia solani. Curr Genet 47(6):381-388
18. Ha GH, Lee SU, Kang DG, Ha NY, Kim SH, Kim J, Bae JM, Kim JW, Lee CW (2002) Proteome analysis of human stomach tissue: Separation of soluble proteins by two-dimensional polyacrylamide gel electrophoresis and identification by mass spectrometry. Electrophoresis 23(15):2513-2524
19. Hammond-Kosack KE, Parker JE (2003) Deciphering plant-pathogen communication: Fresh perspectives for molecular resistance breeding. Curr Opin Biotechnol 14(2):177-193
20. Handelsman J, Stabb EV (1996) Biocontrol of Soilborne Plant Pathogens. Plant Cell 8(10):1855-1869
21. Harman GE, Kubicek CP (1998) Trichoderma and Gliocladium - Enzymes, biological control and commercial applications, vol 2. Taylor & Francis, London
22. Harman GE, Howell CR, Viterbo A, Chet I, Lorito M (2004a) Trichoderma species-opportunistic, avirulent plant symbionts. Nature Rev Microbiol 2:43-56
23. Harman GE, Lorito M, Lynch JM (2004b) Uses of Trichoderma spp. to alleviate or remediate soil and water pollution. Adv Appl Microbiol 56:313-330
24. Howell CR (2003) Mechanism employed by Trichoderma species in the biological control of plant diseases: The history and evolution of current concept. Plant Dis 87:4-10
25. Jacobs DI, van Rijssen MS, van der Heijden R, Verpoorte R (2001) Sequential solubilization of proteins precipitated with trichloroacetic acid in acetone from cultured Catharanthus roseus cell yields 52% more spots after two-dimensional electrophoresis. Proteomics 1:1345-1350
26. Jedd G, Chua NH (2000) A new self-assembled peroxisomal vesicle required for efficient resealing of the plasma membrane. Nat Cell Biol 2:226-231
27. Kazemi-Pour N, Condemine G, Hugouvieux-Cotte-Pattat N (2004) The secretome of the plant pathogenic bacterium Erwinia chrysanthemi. Proteomics 4:3177-3186
28. Kershaw MJ, Talbot NJ (1998) Hydrophobins and repellents: Proteins with fundamental roles in fungal morphogenesis. Fungal Genet Biol 23:18-33
29. Kim ST, Kim SG, Hwang DH, Kang SY, Kim HJ, Lee BH, Lee JJ, Kang KY (2004) Proteomic analysis of pathogen-responsive proteins from rice leaves induced by rice blast fungus, Magnaporthe grisea. Proteomics 4:3569-3578
30. Kullnig C, Mach RL, Lorito M, Kubicek CP (2000) Enzyme diffusion from Trichoderma atroviride (= T. harzianum P1) to Rhizoctonia solani is a prerequisite for triggering of Trichoderma ech42 gene expression before mycoparasitic contact. Appl Environ Microbiol 66(5):2232-2234
31. Lanzuise S, Ruocco M, Scala V, Woo SL, Scala F, Vinale F, Del Sorbo G, Lorito M (2002) Cloning of ABC transporter-encoding genes in Trichoderma spp. to determine their involvement in biocontrol. J Plant Pathol 84:184
32. Lim D, Hains P, Walsh B, Bergquist P, Nevalainen H (2001) Proteins associated with the cell envelope of Trichoderma reesei: A proteomic approach. Proteomics 1:899-910
33. Lim MS, Elenitoba-Johnson KSJ (2004) Proteomics in pathology research. Lab Invest 84:1227-1244
34. Linder MB, Szilvay GR, Nakari-Setälä T, Penttilä ME (2005) Hydrophobins: The protein-amphiphiles of filamentous fungi. FEMS Microbiol Rev 29:877-896
35. Lindquist S (1986) The heat-shock response. Annu Rev Biochem 55:1151-1191
36. Liu P-G, Yang Q (2005) Identification of genes with a biocontrol function in Trichoderma harzianum mycelium using the expressed sequence tag approach. Res Microbiol 156:416-423
37. Lo CT, Liao TF, Deng TC (2000) Induction of systemic resistance of cucumber to cucumber green mosaic virus by the root-colonizing Trichoderma spp. Phytopathology 90(Suppl):S47
38. Lorito M, Woo SL (1998) Advances in understanding the antifungal mechanisms of Trichoderma and new applications for biological control. In: Duffy B, Rosenberger U, Défago G (eds) Molecular approaches in biological control, vol 21. IOBC WPRS Bulletin/Bulletin OILB SROP, Dijon, France, pp 73-80
39. Lorito M, Mach RL, Sposato P, Strauss J, Peterbauer CK, Kubicek CP (1996) Mycoparasitic interaction relieves binding of the Cre1 carbon catabolite repressor protein to promoter sequences of the ech42 (endochitinase-encoding) gene in Trichoderma harzianum. Proc Natl Acad Sci USA 93:14868-14872
40. Lu Z, Tombolini R, Woo S, Zeilinger S, Lorito M, Jansson JK (2004) In vivo study of Trichoderma -pathogen-plant interactions, using constitutive and inducible green fluorescent protein reporter systems. Appl Environ Microbiol 70(5):3073-3081
41. Marks AR (1996) Cellular functions of immunophilins. Physiol Rev 76:631-649
42. Martin GB, Brommonschenkel SH, Chunwongse J, Frary A, Ganal MW, Spivey R, Wu T, Earle ED, Tanksley SD (1993) Map-based cloning of a protein kinase gene conferring disease resistance in tomato. Science 262:1432-1436
43. Miller RM, Jastrow JD (1990) Hierarchy of root and mycorrhizal fungal interactions with soil aggregation. Soil Biol Biochem 22:579-584
44. Moffett P, Farnham G, Peart JR, Baulcombe DC (2002) Interaction between domains of a plant NBS-LRR protein in disease resistance-related cell death. EMBO J 21:4511-4519
45. Morimoto RI, Tissièrers A, Georgopoulos C (1994) Progress and perspectives on the biology of heat shock proteins and molecular chaperones. In: Morimoto RI, Tissières A, Georgopoulos C (eds) The biology of heat shock proteins and molecular chaperones. Cold Spring Harbor Laboratory Press, New York
46. Pandey A, Mann M (2000) Proteomics to study genes and genomes. Nature 405:837-846
47. Ramonell KM, Somerville S (2002) The genomics parade of defense responses: To infinity and beyond. Curr Opin Plant Biol 5:1-4
48. Rey M, Llobell A, Monte E, Scala F, Lorito M (2004) Trichoderma genomics. In: Arora K, Khachatourians GG (eds) Applied mycology and biotechnology - Fungal genomics, vol 4. Elsevier, Amsterdam, pp 225-248
49. Rep M, Dekker HL, Vossen JH, de Boer AD, Houterman PM, Speijer D, Back JW, de Koster CG, Cornelissen BJC (2002) Mass spectrometric identification of isoforms of PR proteins in xylem sap of fungus-infected tomato. Plant Physiol 130:904-917
50. Rohe M, Gierlich A, Hermann H, Hahn M, Schmidt B, Rosahl S, Knogge W (1995) The race-specific elicitor, NIP1, from the barley pathogen, Rhynchosporium secalis, determines avirulence on host plants of the Rrsl resistance genotype. EMBO J 14(17):4168-4177
51. Ronald PC (1997) The molecular basis of disease resistance in rice. Plant Mol Biol 35:179-186
52. Saravan RS, Rose JKC (2004) A critical evaluation of sample extraction techniques for enhanced proteomic analysis of recalcitrant plant tissues. Proteomics 4:2522-2532
53. Singh BK, Millard P, Whiteley AS, Murrell JC (2004) Unravelling rhizosphere-microbial interactions: Opportunities and limitations. Trends Microbiol 12(8):386-393
54. Sivasithamparam K, Ghisalberti EL (1998) Secondary metabolism in Trichoderma and Gliocladium. In: Kubiecek CP, Harman GE (eds) Trichoderma and Gliocladium vol 1. Taylor and Francis, London, pp 139-191
55. Smolka MB, Martins D, Winck FV, Santoro CE, Castellari RR, Ferrari F, Brum IJ, Galembeck E, Della Coletta Filho H, Machado MA, Marangoni S, Novello JC (2003) Proteome analysis of the plant pathogen Xylella fastidiosa reveals major cellular and extracellular proteins and a peculiar codon bias distribution. Proteomics 3:224-237
56. Suárez MB, Sanz L, Chamorro MI, Rey M, González FJ, Llobell A, Monte E (2005) Proteomic analysis of secreted proteins from Trichoderma harzianum. Identification of a fungal cell wall-induced aspartic protease. Fungal Genet Biol 42:924-934
57. Suzuki H, Xia Y, Cameron R, Shadle G, Blount J, Lamb C, Dixon RA (2004) Signals for local and systemic responses of plants to pathogen attack. J Exp Bot 55(395):169-179
58. Talbot NJ (2003) Functional genomics of plant-pathogen interactions. New Phytol 159(1):1-10
59. Valdivia RH, Schekman R (2003) The yeasts Rho1p and Pkc1p regulate the transport of chitin synthase III (Chs3p) from internal stores to the plasma membrane. Proc Natl Acad Sci USA 100(18):10287-10292
60. Viaud M, Brunet-Simon A, Brygoo Y, Pradier J-M, Levis C (2003) Cyclophilin A and calcineurin functions investigated by gene inactivation, cyclosporin A inhibition and cDNA arrays approaches in the phytopathogenic fungus Botrytis cinerea. Mol Microbiol 50(5):1451-1465
61. van der Vlugt-Bergmans CJ, Wagemakers CA, van Kan JA (1997) Cloning and expression of the cutinase A gene of Botrytis cinerea. Mol Plant Microbe Interact 10(1):21-29
62. Yedidia I, Benhamou N, Kapulnik Y, Chet I (2000) Induction and accumulation of PR proteins activity during early stages of root colonization by the mycoparasite Trichoderma harzianum strain T-203. Plant Physiol Biochem 38:863-873
63. Yedidia I, Shoresh M, Kerem Z, Benhamou N, Kapulnik Y, Chet I (2003) Concomitant induction of systemic resistance to Pseudomonas syringae pv. lachrymans in cucumber by Trichoderma asperellum (T-203) and accumulation of phytoalexins. Appl Environ Microbiol 69(12):7343-7353
64. Wilkins MR, Williams K (1997) Cross-species protein identification using amino acid composition, peptide mass fingerprint, isoelectric point and molecular mass: A theoretical evaluation. J Theor Biol 186:7-15
65. Wösten HA (2001) Hydrophobins: Multipurpose proteins. Annu Rev Microbiol 55:625-646
66. Woo SL, Scala F, Rocco M, Lorito M (2006) The Molecular Biology of the Interactions Between Trichoderma spp., Phytopathogenic Fungi, and Plants. Phytopathology 96(2):181-185
67. Zhu H, Bilgin M, Snyder M (2003) Proteomics. Annu Rev Biochem 72:783-812