-
1
-
-
0018426987
-
A strategy of DNA sequencing employing computer programs
-
Staden, R. A strategy of DNA sequencing employing computer programs. Nucleic Acids Res 6, 2601-2610 (1979).
-
(1979)
Nucleic Acids Res
, vol.6
, pp. 2601-2610
-
-
Staden, R.1
-
2
-
-
82355193803
-
Systematic comparison of three methods for fragmentation of long-range PCR products for next generation sequencing
-
Knierim, E., Lucke, B., Schwarz, J. M., Schuelke, M. & Seelow, D. Systematic comparison of three methods for fragmentation of long-range PCR products for next generation sequencing. PLoS One 6, e28240 (2011).
-
(2011)
PLoS One
, vol.6
-
-
Knierim, E.1
Lucke, B.2
Schwarz, J.M.3
Schuelke, M.4
Seelow, D.5
-
3
-
-
84865179264
-
High-throughput bacterial genome sequencing: An embarrassment of choice, a world of opportunity
-
Loman, N. J. et al. High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity. Nat Rev Microbiol 10, 599-606 (2012).
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 599-606
-
-
Loman, N.J.1
-
4
-
-
72849144434
-
Sequencing technologies-the next generation
-
Metzker, M. L. Sequencing technologies-the next generation. Nat Rev Genet 11, 31-46 (2010).
-
(2010)
Nat Rev Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
5
-
-
84891687784
-
Single-cell epigenetics
-
Nawy, T. Single-cell epigenetics. Nat Methods 10, 1060 (2013).
-
(2013)
Nat Methods
, vol.10
, pp. 1060
-
-
Nawy, T.1
-
6
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure, J. & Ji, H. Next-generation DNA sequencing. Nat Biotechnol 26, 1135-1145 (2008).
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
7
-
-
37549029474
-
DNA transposons and the evolution of eukaryotic genomes
-
Feschotte, C. & Pritham, E. J. DNA transposons and the evolution of eukaryotic genomes. Annu Rev Genet 41, 331-368 (2007).
-
(2007)
Annu Rev Genet
, vol.41
, pp. 331-368
-
-
Feschotte, C.1
Pritham, E.J.2
-
9
-
-
84975804424
-
Mapping copy number variation by population-scale genome sequencing
-
Mills, R. E. et al. Mapping copy number variation by population-scale genome sequencing. Nature 470, 59-65 (2011).
-
(2011)
Nature
, vol.470
, pp. 59-65
-
-
Mills, R.E.1
-
10
-
-
79958162661
-
Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
-
Pinto, D. et al. Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants. Nat Biotechnol 29, 512-520 (2011).
-
(2011)
Nat Biotechnol
, vol.29
, pp. 512-520
-
-
Pinto, D.1
-
11
-
-
83855165105
-
Repetitive DNA and next-generation sequencing: Computational challenges and solutions
-
Treangen, T. J. & Salzberg, S. L. Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nat Rev Genet 13, 36-46 (2012).
-
(2012)
Nat Rev Genet
, vol.13
, pp. 36-46
-
-
Treangen, T.J.1
Salzberg, S.L.2
-
12
-
-
77950461601
-
Origins and functional impact of copy number variation in the human genome
-
Conrad, D. F. et al.Origins and functional impact of copy number variation in the human genome. Nature 464, 704-712 (2010).
-
(2010)
Nature
, vol.464
, pp. 704-712
-
-
Conrad, D.F.1
-
13
-
-
84897422147
-
Long insert whole genome sequencing for copy number variant and translocation detection
-
Liang, W. S. et al. Long insert whole genome sequencing for copy number variant and translocation detection. Nucleic Acids Res (2013).
-
(2013)
Nucleic Acids Res
-
-
Liang, W.S.1
-
14
-
-
84891823877
-
The dynamics of genome replication using deep sequencing
-
Muller, C. A. et al. The dynamics of genome replication using deep sequencing. Nucleic Acids Res 42, e3 (2014).
-
(2014)
Nucleic Acids Res
, vol.42
-
-
Muller, C.A.1
-
15
-
-
78649309503
-
Detecting copy number variation with mated short reads
-
Medvedev, P., Fiume, M., Dzamba, M., Smith, T. & Brudno, M. Detecting copy number variation with mated short reads. Genome Res 20, 1613-1622 (2010).
-
(2010)
Genome Res
, vol.20
, pp. 1613-1622
-
-
Medvedev, P.1
Fiume, M.2
Dzamba, M.3
Smith, T.4
Brudno, M.5
-
16
-
-
63949083912
-
Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G 1 C)-biased genomes
-
Kozarewa, I. et al. Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G 1 C)-biased genomes. Nat Methods 6, 291-295 (2009).
-
(2009)
Nat Methods
, vol.6
, pp. 291-295
-
-
Kozarewa, I.1
-
17
-
-
84861548193
-
Summarizing and correcting the GC content bias in high-throughput sequencing
-
Benjamini, Y. & Speed, T. P. Summarizing and correcting the GC content bias in high-throughput sequencing. Nucleic Acids Res 40, e72 (2012).
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Benjamini, Y.1
Speed, T.P.2
-
18
-
-
84876936831
-
Effects of GC bias in next-generation-sequencing data on de novo genome assembly
-
Chen, Y. C., Liu, T., Yu, C. H., Chiang, T. Y. & Hwang, C. C. Effects of GC bias in next-generation-sequencing data on de novo genome assembly. PLoS One 8, e62856 (2013).
-
(2013)
PLoS One
, vol.8
-
-
Chen, Y.C.1
Liu, T.2
Yu, C.H.3
Chiang, T.Y.4
Hwang, C.C.5
-
19
-
-
79551632681
-
And removal of biases in the analysis of next-generation sequencing reads
-
Schwartz, S., Oren, R. & Ast, G. Detection and removal of biases in the analysis of next-generation sequencing reads. PLoS One 6, e16685 (2011).
-
(2011)
PLoS One
, vol.6
-
-
Schwartz, S.1
Oren, R.2
Detection, A.G.3
-
20
-
-
78751682536
-
Overcoming bias and systematic errors in next generation sequencing data
-
Taub, M. A., Corrada Bravo, H. & Irizarry, R. A. Overcoming bias and systematic errors in next generation sequencing data. Genome Med 2, 87 (2010).
-
(2010)
Genome Med
, vol.2
, pp. 87
-
-
Taub, M.A.1
Corrada Bravo, H.2
Irizarry, R.A.3
-
21
-
-
84869876659
-
The effect of strand bias in Illumina short-read sequencing data
-
Guo, Y. et al. The effect of strand bias in Illumina short-read sequencing data. BMC Genomics 13, 666 (2012).
-
(2012)
BMC Genomics
, vol.13
, pp. 666
-
-
Guo, Y.1
-
22
-
-
84878558449
-
Probabilistic error correction for RNA sequencing
-
Le, H. S., Schulz, M. H., McCauley, B. M., Hinman, V. F. & Bar-Joseph, Z. Probabilistic error correction for RNA sequencing. Nucleic Acids Res 41, e109 (2013).
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Le, H.S.1
Schulz, M.H.2
McCauley, B.M.3
Hinman, V.F.4
Bar-Joseph, Z.5
-
23
-
-
80052990473
-
Systematic bias in highthroughput sequencing data and its correction by BEADS
-
Cheung, M. S., Down, T. A., Latorre, I. & Ahringer, J. Systematic bias in highthroughput sequencing data and its correction by BEADS. Nucleic Acids Res 39, e103 (2011).
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Cheung, M.S.1
Down, T.A.2
Latorre, I.3
Ahringer, J.4
-
24
-
-
77955883388
-
Biases in Illumina transcriptome sequencing caused by random hexamer priming
-
Hansen, K. D., Brenner, S. E. & Dudoit, S. Biases in Illumina transcriptome sequencing caused by random hexamer priming. Nucleic Acids Res 38, e131 (2010).
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Hansen, K.D.1
Brenner, S.E.2
Dudoit, S.3
-
25
-
-
84876670514
-
Systematic biases in DNA copy number originate from isolation procedures
-
van Heesch, S. et al. Systematic biases in DNA copy number originate from isolation procedures. Genome Biol 14, R33 (2013).
-
(2013)
Genome Biol
, vol.14
-
-
Van Heesch, S.1
-
26
-
-
70349267600
-
Mapping accessible chromatin regions using Sono-Seq
-
Auerbach, R. K. et al.Mapping accessible chromatin regions using Sono-Seq. Proc Natl Acad Sci USA 106, 14926-14931 (2009).
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 14926-14931
-
-
Auerbach, R.K.1
-
27
-
-
78651111379
-
Sequence-specific ultrasonic cleavage of DNA
-
Grokhovsky, S. L. et al. Sequence-specific ultrasonic cleavage of DNA. Biophys J 100, 117-125 (2011).
-
(2011)
Biophys J
, vol.100
, pp. 117-125
-
-
Grokhovsky, S.L.1
-
28
-
-
33646509865
-
Specificity of DNA Cleavage by Ultrasound
-
Grokhovsky, S. L. Specificity of DNA Cleavage by Ultrasound. Molecular Biology (in Russan) 40, 276-283 (2006).
-
(2006)
Molecular Biology (In Russan)
, vol.40
, pp. 276-283
-
-
Grokhovsky, S.L.1
-
29
-
-
78650094076
-
Gel Electrophoresis-Principles and Basics (ed Dr. Sameh Magdeldin) (InTech, 2012). 30. 1000 Genomes Project Consortium et al. A map of human genome variation from population-scale sequencing
-
Grokhovsky, S. L. et al. in Gel Electrophoresis-Principles and Basics (ed Dr. Sameh Magdeldin) (InTech, 2012). 30. 1000 Genomes Project Consortium et al. A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073 (2010).
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
Grokhovsky, S.L.1
-
30
-
-
84871949803
-
Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana
-
Nolte, V., Pandey, R. V., Kofler, R. & Schlotterer, C. Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana. Genome Res 23, 99-110 (2013).
-
(2013)
Genome Res
, vol.23
, pp. 99-110
-
-
Nolte, V.1
Pandey, R.V.2
Kofler, R.3
Schlotterer, C.4
-
31
-
-
84876245094
-
Probing DNA shape and methylation state on a genomic scale with DNase i
-
Lazarovici, A. et al. Probing DNA shape and methylation state on a genomic scale with DNase I. Proc Natl Acad Sci USA 110, 6376-6381 (2013).
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 6376-6381
-
-
Lazarovici, A.1
-
33
-
-
33645373579
-
DNA acts as a nucleation site for transient cavitation in the ultrasonic nebulizer
-
Lentz, Y. K., Anchordoquy, T. J. & Lengsfeld, C. S. DNA acts as a nucleation site for transient cavitation in the ultrasonic nebulizer. J Pharm Sci 95, 607-619 (2006).
-
(2006)
J Pharm Sci
, vol.95
, pp. 607-619
-
-
Lentz, Y.K.1
Anchordoquy, T.J.2
Lengsfeld, C.S.3
-
34
-
-
84880211563
-
Reprever: Resolving low-copy duplicated sequences using template driven assembly
-
Kim, S., Medvedev, P., Paton, T. A. & Bafna, V. Reprever: resolving low-copy duplicated sequences using template driven assembly. Nucleic Acids Res 41, e128 (2013).
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Kim, S.1
Medvedev, P.2
Paton, T.A.3
Bafna, V.4
-
35
-
-
52649157765
-
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
-
Dohm, J. C., Lottaz, C., Borodina, T. & Himmelbauer, H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res 36, e105 (2008).
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Dohm, J.C.1
Lottaz, C.2
Borodina, T.3
Himmelbauer, H.4
-
36
-
-
0029020740
-
PCR bias in amplification of androgen receptor alleles, a trinucleotide repeat marker used in clonality studies
-
Mutter, G. L. & Boynton, K. A. PCR bias in amplification of androgen receptor alleles, a trinucleotide repeat marker used in clonality studies. Nucleic Acids Res 23, 1411-1418 (1995).
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 1411-1418
-
-
Mutter, G.L.1
Boynton, K.A.2
-
37
-
-
70349944541
-
Ultrasonic cleavage of nicked DNA
-
Il'icheva, I. A., Nechipurenko, D. Y. & Grokhovsky, S. L. Ultrasonic cleavage of nicked DNA. J Biomol Struct Dyn 27, 391-398 (2009).
-
(2009)
J Biomol Struct Dyn
, vol.27
, pp. 391-398
-
-
Il'Icheva, I.A.1
Nechipurenko, D.Y.2
Grokhovsky, S.L.3
-
38
-
-
75649151299
-
Characteristics of ultrasonic cleavage of DNA
-
Nechipurenko, Y. D. et al. Characteristics of ultrasonic cleavage of DNA. Journal of Structural Chemistry 50, 1007-1013 (2009).
-
(2009)
Journal of Structural Chemistry
, vol.50
, pp. 1007-1013
-
-
Nechipurenko, Y.D.1
-
40
-
-
65249089637
-
Local DNA topography correlates with functional noncoding regions of the human genome
-
Parker, S. C., Hansen, L., Abaan, H. O., Tullius, T. D. & Margulies, E. H. Local DNA topography correlates with functional noncoding regions of the human genome. Science 324, 389-392 (2009).
-
(2009)
Science
, vol.324
, pp. 389-392
-
-
Parker, S.C.1
Hansen, L.2
Abaan, H.O.3
Tullius, T.D.4
Margulies, E.H.5
|