-
1
-
-
0027477501
-
Multiple functions of nucleosomes and regulatory factors in transcription
-
doi: 10.1016/0968-0004(93)90160-O
-
Workman JL, Buchman AR, (1993) Multiple functions of nucleosomes and regulatory factors in transcription. Trends Biochem Sci 18: 90-95 doi:10.1016/0968-0004(93)90160-O.
-
(1993)
Trends Biochem Sci
, vol.18
, pp. 90-95
-
-
Workman, J.L.1
Buchman, A.R.2
-
2
-
-
0028445339
-
Transcriptional activation. Switched-on chromatin
-
Wolffe AP, (1994) Transcriptional activation. Switched-on chromatin. Curr Biol 4: 525-528.
-
(1994)
Curr Biol
, vol.4
, pp. 525-528
-
-
Wolffe, A.P.1
-
3
-
-
67650725820
-
The biology of chromatin remodeling complexes
-
doi: 10.1146/annurev.biochem.77.062706.153223
-
Clapier CR, Cairns BR, (2009) The biology of chromatin remodeling complexes. Annu Rev Biochem 78: 273-304 doi:10.1146/annurev.biochem.77.062706.153223.
-
(2009)
Annu Rev Biochem
, vol.78
, pp. 273-304
-
-
Clapier, C.R.1
Cairns, B.R.2
-
4
-
-
84873301476
-
ISWI Remodelers Slide Nucleosomes with Coordinated Multi-Base-Pair Entry Steps and Single-Base-Pair Exit Steps
-
doi: 10.1016/j.cell.2012.12.040
-
Deindl S, Hwang WL, Hota SK, Blosser TR, Prasad P, et al. (2013) ISWI Remodelers Slide Nucleosomes with Coordinated Multi-Base-Pair Entry Steps and Single-Base-Pair Exit Steps. Cell 152: 442-452 doi:10.1016/j.cell.2012.12.040.
-
(2013)
Cell
, vol.152
, pp. 442-452
-
-
Deindl, S.1
Hwang, W.L.2
Hota, S.K.3
Blosser, T.R.4
Prasad, P.5
-
5
-
-
80052970429
-
Mechanisms for ATP-dependent chromatin remodelling: the means to the end
-
doi: 10.1111/j.1742-4658.2011.08281.x
-
Flaus A, Owen-Hughes T, (2011) Mechanisms for ATP-dependent chromatin remodelling: the means to the end. FEBS J 278: 3579-3595 doi:10.1111/j.1742-4658.2011.08281.x.
-
(2011)
FEBS J
, vol.278
, pp. 3579-3595
-
-
Flaus, A.1
Owen-Hughes, T.2
-
6
-
-
67650711140
-
Genome-wide views of chromatin structure
-
doi: 10.1146/annurev.biochem.78.071107.134639
-
Rando OJ, Chang HY, (2009) Genome-wide views of chromatin structure. Annu Rev Biochem 78: 245-271 doi:10.1146/annurev.biochem.78.071107.134639.
-
(2009)
Annu Rev Biochem
, vol.78
, pp. 245-271
-
-
Rando, O.J.1
Chang, H.Y.2
-
7
-
-
79956316470
-
A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome
-
doi: 10.1126/science.1200508
-
Zhang Z, Wippo CJ, Wal M, Ward E, Korber P, et al. (2011) A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome. Science 332: 977-980 doi:10.1126/science.1200508.
-
(2011)
Science
, vol.332
, pp. 977-980
-
-
Zhang, Z.1
Wippo, C.J.2
Wal, M.3
Ward, E.4
Korber, P.5
-
8
-
-
33845707730
-
NoRC-dependent nucleosome positioning silences rRNA genes
-
doi: 10.1038/sj.emboj.7601454
-
Li J, Längst G, Grummt I, (2006) NoRC-dependent nucleosome positioning silences rRNA genes. EMBO J 25: 5735-5741 doi:10.1038/sj.emboj.7601454.
-
(2006)
EMBO J
, vol.25
, pp. 5735-5741
-
-
Li, J.1
Längst, G.2
Grummt, I.3
-
9
-
-
35348984181
-
DNA sequence- and conformation-directed positioning of nucleosomes by chromatin-remodeling complexes
-
doi: 10.1073/pnas.0702430104
-
Rippe K, Schrader A, Riede P, Strohner R, Lehmann E, et al. (2007) DNA sequence- and conformation-directed positioning of nucleosomes by chromatin-remodeling complexes. Proc Natl Acad Sci USA 104: 15635-15640 doi:10.1073/pnas.0702430104.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 15635-15640
-
-
Rippe, K.1
Schrader, A.2
Riede, P.3
Strohner, R.4
Lehmann, E.5
-
10
-
-
78650536985
-
Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites
-
doi: 10.1073/pnas.1003438107
-
Erdel F, Schubert T, Marth C, Längst G, Rippe K, (2010) Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites. Proc Natl Acad Sci USA 107: 19873-19878 doi:10.1073/pnas.1003438107.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 19873-19878
-
-
Erdel, F.1
Schubert, T.2
Marth, C.3
Längst, G.4
Rippe, K.5
-
11
-
-
33745122231
-
Identification of multiple distinct Snf2 subfamilies with conserved structural motifs
-
doi: 10.1093/nar/gkl295
-
Flaus A, Martin D, Barton G, Owen-Hughes T, (2006) Identification of multiple distinct Snf2 subfamilies with conserved structural motifs. Nucleic Acids Res 34: 2887-2905 doi:10.1093/nar/gkl295.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 2887-2905
-
-
Flaus, A.1
Martin, D.2
Barton, G.3
Owen-Hughes, T.4
-
12
-
-
84876079745
-
DNA looping facilitates targeting of a chromatin remodeling enzyme
-
doi: 10.1016/j.molcel.2013.02.005
-
Yadon AN, Singh BN, Hampsey M, Tsukiyama T, (2013) DNA looping facilitates targeting of a chromatin remodeling enzyme. Mol Cell 50: 93-103 doi:10.1016/j.molcel.2013.02.005.
-
(2013)
Mol Cell
, vol.50
, pp. 93-103
-
-
Yadon, A.N.1
Singh, B.N.2
Hampsey, M.3
Tsukiyama, T.4
-
13
-
-
80052656113
-
Targeting chromatin remodelers: signals and search mechanisms
-
doi: 10.1016/j.bbagrm.2011.06.005
-
Erdel F, Krug J, Längst G, Rippe K, (2011) Targeting chromatin remodelers: signals and search mechanisms. Biochim Biophys Acta 1809: 497-508 doi:10.1016/j.bbagrm.2011.06.005.
-
(2011)
Biochim Biophys Acta
, vol.1809
, pp. 497-508
-
-
Erdel, F.1
Krug, J.2
Längst, G.3
Rippe, K.4
-
14
-
-
0842347401
-
Recruitment of the nucleolar remodeling complex NoRC establishes ribosomal DNA silencing in chromatin
-
Strohner R, Németh A, Nightingale KP, Grummt I, Becker PB, et al. (2004) Recruitment of the nucleolar remodeling complex NoRC establishes ribosomal DNA silencing in chromatin. Mol Cell Biol 24: 1791-1798.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 1791-1798
-
-
Strohner, R.1
Németh, A.2
Nightingale, K.P.3
Grummt, I.4
Becker, P.B.5
-
15
-
-
0035801407
-
NoRC-a novel member of mammalian ISWI-containing chromatin remodeling machines
-
doi: 10.1093/emboj/20.17.4892
-
Strohner R, Németh A, Jansa P, Hofmann-Rohrer U, Santoro R, et al. (2001) NoRC-a novel member of mammalian ISWI-containing chromatin remodeling machines. EMBO J 20: 4892-4900 doi:10.1093/emboj/20.17.4892.
-
(2001)
EMBO J
, vol.20
, pp. 4892-4900
-
-
Strohner, R.1
Németh, A.2
Jansa, P.3
Hofmann-Rohrer, U.4
Santoro, R.5
-
16
-
-
84875263916
-
Epigenetic control of RNA polymerase I transcription in mammalian cells
-
doi: 10.1016/j.bbagrm.2012.10.004
-
Grummt I, Längst G, (2013) Epigenetic control of RNA polymerase I transcription in mammalian cells. Biochim Biophys Acta 1829: 393-404 doi:10.1016/j.bbagrm.2012.10.004.
-
(2013)
Biochim Biophys Acta
, vol.1829
, pp. 393-404
-
-
Grummt, I.1
Längst, G.2
-
17
-
-
3242885608
-
The chromatin remodeling complex NoRC and TTF-I cooperate in the regulation of the mammalian rRNA genes in vivo
-
doi: 10.1093/nar/gkh732
-
Németh A, Strohner R, Grummt I, Längst G, (2004) The chromatin remodeling complex NoRC and TTF-I cooperate in the regulation of the mammalian rRNA genes in vivo. Nucleic Acids Res 32: 4091-4099 doi:10.1093/nar/gkh732.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 4091-4099
-
-
Németh, A.1
Strohner, R.2
Grummt, I.3
Längst, G.4
-
18
-
-
33646147563
-
Intergenic transcripts regulate the epigenetic state of rRNA genes
-
doi: 10.1016/j.molcel.2006.03.028
-
Mayer C, Schmitz K-M, Li J, Grummt I, Santoro R, (2006) Intergenic transcripts regulate the epigenetic state of rRNA genes. Mol Cell 22: 351-361 doi:10.1016/j.molcel.2006.03.028.
-
(2006)
Mol Cell
, vol.22
, pp. 351-361
-
-
Mayer, C.1
Schmitz, K.-M.2
Li, J.3
Grummt, I.4
Santoro, R.5
-
19
-
-
48649106585
-
The structure of NoRC-associated RNA is crucial for targeting the chromatin remodelling complex NoRC to the nucleolus
-
doi: 10.1038/embor.2008.109
-
Mayer C, Neubert M, Grummt I, (2008) The structure of NoRC-associated RNA is crucial for targeting the chromatin remodelling complex NoRC to the nucleolus. EMBO Rep 9: 774-780 doi:10.1038/embor.2008.109.
-
(2008)
EMBO Rep
, vol.9
, pp. 774-780
-
-
Mayer, C.1
Neubert, M.2
Grummt, I.3
-
20
-
-
0039837085
-
Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences
-
doi: 10.1006/jmbi.1999.2686, 1999
-
Thåström A, et al. (1999) Thåström A, Lowary PT, Widlund HR, Cao H, et al. (1999) Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences. J Mol Biol 288: 213-229 doi:10.1006/jmbi.1999.2686.
-
(1999)
J Mol Biol
, vol.288
, pp. 213-229
-
-
Thåström, A.1
Thåström, A.2
Lowary, P.T.3
Widlund, H.R.4
Cao, H.5
-
21
-
-
77956519705
-
DNA sequence encoded repression of rRNA gene transcription in chromatin
-
doi: 10.1093/nar/gkq263
-
Felle M, Exler JH, Merkl R, Dachauer K, Brehm A, et al. (2010) DNA sequence encoded repression of rRNA gene transcription in chromatin. Nucleic Acids Res 38: 5304-5314 doi:10.1093/nar/gkq263.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 5304-5314
-
-
Felle, M.1
Exler, J.H.2
Merkl, R.3
Dachauer, K.4
Brehm, A.5
-
22
-
-
0024584528
-
Specific recognition of cruciform DNA by nuclear protein HMG1
-
Bianchi ME, Beltrame M, Paonessa G, (1989) Specific recognition of cruciform DNA by nuclear protein HMG1. Science 243: 1056-1059.
-
(1989)
Science
, vol.243
, pp. 1056-1059
-
-
Bianchi, M.E.1
Beltrame, M.2
Paonessa, G.3
-
23
-
-
0033603212
-
Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer
-
Längst G, Bonte EJ, Corona DFV, Becker PB, (1999) Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer. Cell 97: 843-852.
-
(1999)
Cell
, vol.97
, pp. 843-852
-
-
Längst, G.1
Bonte, E.J.2
Corona, D.F.V.3
Becker, P.B.4
-
24
-
-
0026630130
-
Intrinsically bent DNA flanks both sides of an RNA polymerase I transcription start site. Both regions display novel electrophoretic mobility
-
Schroth GP, Siino JS, Cooney CA, Th'ng JP, Ho PS, et al. (1992) Intrinsically bent DNA flanks both sides of an RNA polymerase I transcription start site. Both regions display novel electrophoretic mobility. J Biol Chem 267: 9958-9964.
-
(1992)
J Biol Chem
, vol.267
, pp. 9958-9964
-
-
Schroth, G.P.1
Siino, J.S.2
Cooney, C.A.3
Th'ng, J.P.4
Ho, P.S.5
-
25
-
-
1842301048
-
Structural analysis of mouse rDNA: coincidence between nuclease hypersensitive sites, DNA curvature and regulatory elements in the intergenic spacer
-
Längst G, Schätz T, Langowski J, Grummt I, (1997) Structural analysis of mouse rDNA: coincidence between nuclease hypersensitive sites, DNA curvature and regulatory elements in the intergenic spacer. Nucleic Acids Res 25: 511-517.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 511-517
-
-
Längst, G.1
Schätz, T.2
Langowski, J.3
Grummt, I.4
-
26
-
-
0030810226
-
Curvature and sequence analysis of eukaryotic promoters
-
doi: 10.1080/07391102.1997.10508191
-
Schätz T, Langowski J, (1997) Curvature and sequence analysis of eukaryotic promoters. J Biomol Struct Dyn 15: 265-275 doi:10.1080/07391102.1997.10508191.
-
(1997)
J Biomol Struct Dyn
, vol.15
, pp. 265-275
-
-
Schätz, T.1
Langowski, J.2
-
27
-
-
79952279871
-
Dissecting chromatin interactions in living cells from protein mobility maps
-
doi: 10.1007/s10577-010-9155-6
-
Erdel F, Müller-Ott K, Baum M, Wachsmuth M, Rippe K, (2011) Dissecting chromatin interactions in living cells from protein mobility maps. Chromosome Res 19: 99-115 doi:10.1007/s10577-010-9155-6.
-
(2011)
Chromosome Res
, vol.19
, pp. 99-115
-
-
Erdel, F.1
Müller-Ott, K.2
Baum, M.3
Wachsmuth, M.4
Rippe, K.5
-
28
-
-
74149088040
-
Intergenic transcripts originating from a subclass of ribosomal DNA repeats silence ribosomal RNA genes in trans
-
doi: 10.1038/embor.2009.254
-
Santoro R, Schmitz K-M, Sandoval J, Grummt I, (2010) Intergenic transcripts originating from a subclass of ribosomal DNA repeats silence ribosomal RNA genes in trans. EMBO Rep 11: 52-58 doi:10.1038/embor.2009.254.
-
(2010)
EMBO Rep
, vol.11
, pp. 52-58
-
-
Santoro, R.1
Schmitz, K.-M.2
Sandoval, J.3
Grummt, I.4
-
29
-
-
26944433102
-
A "loop recapture" mechanism for ACF-dependent nucleosome remodeling
-
doi: 10.1038/nsmb966
-
Strohner R, Wachsmuth M, Dachauer K, Mazurkiewicz J, Hochstatter J, et al. (2005) A "loop recapture" mechanism for ACF-dependent nucleosome remodeling. Nat Struct Mol Biol 12: 683-690 doi:10.1038/nsmb966.
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 683-690
-
-
Strohner, R.1
Wachsmuth, M.2
Dachauer, K.3
Mazurkiewicz, J.4
Hochstatter, J.5
-
30
-
-
84859300824
-
Nucleosome recognition and spacing by chromatin remodelling factor ISW1a
-
doi: 10.1042/BST20110748
-
Richmond TJ, (2012) Nucleosome recognition and spacing by chromatin remodelling factor ISW1a. Biochem Soc Trans 40: 347-350 doi:10.1042/BST20110748.
-
(2012)
Biochem Soc Trans
, vol.40
, pp. 347-350
-
-
Richmond, T.J.1
-
31
-
-
33845356072
-
The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing
-
doi: 10.1038/nsmb1170
-
Yang JG, Madrid TS, Sevastopoulos E, Narlikar GJ, (2006) The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing. Nat Struct Mol Biol 13: 1078-1083 doi:10.1038/nsmb1170.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 1078-1083
-
-
Yang, J.G.1
Madrid, T.S.2
Sevastopoulos, E.3
Narlikar, G.J.4
-
32
-
-
84875196326
-
Determinants of nucleosome positioning
-
doi: 10.1038/nsmb.2506
-
Struhl K, Segal E, (2013) Determinants of nucleosome positioning. Nat Struct Mol Biol 20: 267-273 doi:10.1038/nsmb.2506.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 267-273
-
-
Struhl, K.1
Segal, E.2
-
33
-
-
0030862982
-
The role of chromatin in transcriptional regulation
-
Li Q, Wrange O, Eriksson P, (1997) The role of chromatin in transcriptional regulation. Int J Biochem Cell Biol 29: 731-742.
-
(1997)
Int J Biochem Cell Biol
, vol.29
, pp. 731-742
-
-
Li, Q.1
Wrange, O.2
Eriksson, P.3
-
34
-
-
79961164933
-
Histone occupancy in vivo at the 601 nucleosome binding element is determined by transcriptional history
-
doi: 10.1128/MCB.05599-11
-
Perales R, Zhang L, Bentley D, (2011) Histone occupancy in vivo at the 601 nucleosome binding element is determined by transcriptional history. Mol Cell Biol 31: 3485-3496 doi:10.1128/MCB.05599-11.
-
(2011)
Mol Cell Biol
, vol.31
, pp. 3485-3496
-
-
Perales, R.1
Zhang, L.2
Bentley, D.3
-
35
-
-
72949099668
-
Dynamics of nucleosome remodelling by individual ACF complexes
-
doi: 10.1038/nature08627
-
Blosser TR, Yang JG, Stone MD, Narlikar GJ, Zhuang X, (2009) Dynamics of nucleosome remodelling by individual ACF complexes. Nature 462: 1022-1027 doi:10.1038/nature08627.
-
(2009)
Nature
, vol.462
, pp. 1022-1027
-
-
Blosser, T.R.1
Yang, J.G.2
Stone, M.D.3
Narlikar, G.J.4
Zhuang, X.5
-
36
-
-
84878563251
-
Large-scale organization of ribosomal DNA chromatin is regulated by Tip5
-
doi: 10.1093/nar/gkt218
-
Zillner K, Filarsky M, Rachow K, Weinberger M, Längst G, et al. (2013) Large-scale organization of ribosomal DNA chromatin is regulated by Tip5. Nucleic Acids Res 41: 5251-5262 doi:10.1093/nar/gkt218.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 5251-5262
-
-
Zillner, K.1
Filarsky, M.2
Rachow, K.3
Weinberger, M.4
Längst, G.5
-
37
-
-
0037009366
-
The chromatin remodeling complex NoRC targets HDAC1 to the ribosomal gene promoter and represses RNA polymerase I transcription
-
Zhou Y, Santoro R, Grummt I, (2002) The chromatin remodeling complex NoRC targets HDAC1 to the ribosomal gene promoter and represses RNA polymerase I transcription. EMBO J 21: 4632-4640.
-
(2002)
EMBO J
, vol.21
, pp. 4632-4640
-
-
Zhou, Y.1
Santoro, R.2
Grummt, I.3
-
38
-
-
0036844024
-
The nucleolar remodeling complex NoRC mediates heterochromatin formation and silencing of ribosomal gene transcription
-
doi: 10.1038/ng1010
-
Santoro R, Li J, Grummt I, (2002) The nucleolar remodeling complex NoRC mediates heterochromatin formation and silencing of ribosomal gene transcription. Nat Genet 32: 393-396 doi:10.1038/ng1010.
-
(2002)
Nat Genet
, vol.32
, pp. 393-396
-
-
Santoro, R.1
Li, J.2
Grummt, I.3
-
39
-
-
77958576363
-
Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes
-
doi: 10.1101/gad.590910
-
Schmitz K-M, Mayer C, Postepska A, Grummt I, (2010) Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes. Genes Dev 24: 2264-2269 doi:10.1101/gad.590910.
-
(2010)
Genes Dev
, vol.24
, pp. 2264-2269
-
-
Schmitz, K.-M.1
Mayer, C.2
Postepska, A.3
Grummt, I.4
-
40
-
-
80052490463
-
Nucleosomes protect DNA from DNA methylation in vivo and in vitro
-
doi: 10.1093/nar/gkr263
-
Felle M, Hoffmeister H, Rothammer J, Fuchs A, Exler JH, et al. (2011) Nucleosomes protect DNA from DNA methylation in vivo and in vitro. Nucleic Acids Res 39: 6956-6969 doi:10.1093/nar/gkr263.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 6956-6969
-
-
Felle, M.1
Hoffmeister, H.2
Rothammer, J.3
Fuchs, A.4
Exler, J.H.5
-
41
-
-
0024431827
-
Assembly of nucleosomes and chromatin in vitro
-
Rhodes D, Laskey RA, (1989) Assembly of nucleosomes and chromatin in vitro. Meth Enzymol 170: 575-585.
-
(1989)
Meth Enzymol
, vol.170
, pp. 575-585
-
-
Rhodes, D.1
Laskey, R.A.2
-
42
-
-
0035930334
-
ISWI induces nucleosome sliding on nicked DNA
-
Längst G, Becker PB, (2001) ISWI induces nucleosome sliding on nicked DNA. Mol Cell 8: 1085-1092.
-
(2001)
Mol Cell
, vol.8
, pp. 1085-1092
-
-
Längst, G.1
Becker, P.B.2
|