Multiple infection and microdiversity among helicobacter pylori isolates in a single host in India

PLoS ONE

Volumn 7, Issue 8, 2012, Pages

  Patra, Rajashree ^a   Chattopadhyay, Santanu ^a   De, Ronita ^a   Ghosh, Prachetash ^a   Ganguly, Mou ^a   Chowdhury, Abhijit ^b   Ramamurthy, T ^a   Nair, G B ^a   Mukhopadhyay, Asish K ^a  

^a NATIONAL INSTITUTE OF CHOLERA AND ENTERIC DISEASES   (India)

^b INSTITUTE OF POST GRADUATE MEDICAL EDUCATION AND RESEARCH   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIAL VIRULENCE; BACTERIUM COLONY; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CAGA GENE; CLINICAL ARTICLE; CONTROLLED STUDY; DNA FINGERPRINTING; GASTRITIS; GASTROINTESTINAL ENDOSCOPY; GENE INSERTION SEQUENCE; GENE LOCUS; GENETIC MARKER; GENETIC POLYMORPHISM; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENOTYPING TECHNIQUE; HELICOBACTER PYLORI; HOST; HUMAN; HUMAN TISSUE; ICEA1 GENE; ICEA2 GENE; INDIA; INDIAN; MIXED INFECTION; NONHUMAN; PEPTIC ULCER; STOMACH ADENOCARCINOMA; VACA GENE; VAPD2 GENE;

ANTIGENS, BACTERIAL; BIODIVERSITY; DNA PRIMERS; DUODENUM; ENDOSCOPY; GENETIC MARKERS; GENETIC VARIATION; GENOTYPE; HELICOBACTER INFECTIONS; HELICOBACTER PYLORI; HUMANS; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; RECOMBINATION, GENETIC; SEQUENCE ANALYSIS, DNA; STOMACH; VIRULENCE;

EID: 84865411410     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0043370     Document Type: Article

References (47)

1. NIH Consensus Conference, (1994) Helicobacter pylori in peptic ulcer disease. J Am Med Assoc 272: 65-69.
2. Correa P (1997) Helicobacter pylori as a pathogen and carcinogen. J Physiol Pharmacol 48: Suppl 19-24.
3. Parsonnet J, (1998) Helicobacter pylori. Infect Dis Clin North Am 12: 185-197.
4. Neale KR, Logan RP (1995) The epidemiology and transmission of Helicobacter pylori infection in children. Aliment Pharmacol Ther 9: Suppl 77-84.
5. Taylor NS, Fox JG, Akopyants NS, Berg DE, Thompson N, et al. (1995) Long-term colonization with single and multiple strains of Helicobacter pylori assessed by DNA fingerprinting. J Clin Microbiol 33: 918-923.
6. Parsonnet J (1995) The incidence of Helicobacter pylori infection. Aliment Pharmacol Ther 9: Suppl 45-51.
7. Cooke CL, Huff JL, Solnick JV, (2005) The role of genome diversity and immune evasion in persistent infection with Helicobacter pylori. FEMS Immunol Med Microbiol 45: 11-23.
8. Akopyanz N, Bukanov NO, Westblom TU, Kresovich S, Berg DE, (1992) DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting. Nucleic Acids Res 20: 5137-5142.
9. Tee W, Lambert J, Smallwood R, Schembri M, Ross BC, et al. (1992) Ribotyping of Helicobacter pylori from clinical specimens. J Clin Microbiol 30: 1562-1567.
10. Garner JA, Cover TL, (1995) Analysis of genetic diversity in cytotoxin-producing and non-cytotoxin-producing Helicobacter pylori strains. J Infect Dis 172: 290-293.
11. Go MF, Kapur V, Graham DY, Musser JM, (1996) Population genetic analysis of Helicobacter pylori by multilocus enzyme electrophoresis: extensive allelic diversity and recombinational population structure. J Bacteriol 178: 3934-3955.
12. Jiang Q, Hiratsuka K, Taylor DE, (1996) Variability of gene order in different Helicobacter pylori strains contributes to genome diversity. Mol Microbiol 20: 833-842.
13. Israel DA, Salama N, Krishna U, Rieger UM, Atherton JC, et al. (2001) Helicobacter pylori genetic diversity within the gastric niche of a single human host. Proc Natl Acad Sci USA 98: 14625-14630.
14. Suerbaum S, Smith JM, Bapumia K, Morelli G, Smith NH, et al. (1998) Free recombination within Helicobaceter pylori. Proc Natl Acad Sci USA 95: 12619-12624.
15. Falush D, Kraft C, Taylor NS, Correa P, Fox JG, et al. (2001) Recombination and mutation during long-term gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age. Proc Natl Acad Sci USA 98: 15056-15061.
16. Gill HH, Desai HG, Majmudar P, Mehta PR, Prabhu SR, (1993) Epidemiology of Helicobacter pylori: the Indian scenario. Indian J Gastroenterol 12: 9-11.
17. Graham DY, Adam E, Reddy GT, Agarwal JP, Agarwal R, et al. (1991) Seroepidemiology of Helicobacter pylori infection in India. Comparison of developing and developed countries. Dig Dis Sci 36: 1084-1088.
18. Prasad S, Mathan M, Chandy G, Rajan DP, Venkateswaran S, et al. (1994) Prevalence of Helicobacter pylori in southern Indian controls and patients with gastroduodenal diseases. J Gastroenterol Hepatol 9: 501-506.
19. Kersulyte D, Chalkauskas H, Berg DE, (1999) Emergence of recombinant strains of Helicobacter pylori during human infection. Mol Microbiol 31: 31-43.
20. Cao P, Cover TL, (1997) High-level genetic diversity in the vapD chromosomal region of Helicobacter pylori. J Bacteriol 179: 2852-2856.
21. Akada JK, Ogura K, Dailidiene D, Dailide G, Cheverud JM, et al. (2003) Helicobacter pylori tissue tropism: mouse colonizing strains can target different gastric niches. Microbiol 149: 1901-1909.
22. Jain R, Rivera MC, Lake JA, (1999) Horizontal gene transfer among genomes: the complexity hypothesis. Proc Natl Acad Sci USA 96: 3801-3806.
23. Smith JM, Dowson CG, Spratt BG, (1991) Localized sex in bacteria. Nature 349: 29-31.
24. Alm RA, Ling L-SL, Moir DT, King BL, Brown ED, et al. (1999) Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 397: 176-180.
25. Atherton JC, Cao P, Peek RMJ, Tummuru MK, Blaser MJ, et al. (1995) Mosaicism in vacuolating cytotoxin alleles of Helicobacter pylori: association of specific vacA types with cytotoxin production and peptic ulceration. J Biol Chem 270: 17771-17777.
26. Lopez CR, Owen RJ, Desal M, (1993) Differentiation between isolates of Helicobacter pylori by PCR-RFLP analysis of urease A and B genes and comparison with ribosomal RNA gene patterns. FEMS Microbiol Lett 110: 37-43.
27. Taylor DE, Eaton M, Chang N, Salama SM, (1992) Construction of a Helicobacter pylori genome map and demonstration of diversity at the genome level. J Bacteriol 174: 6800-6806.
28. Tomb JF, White O, Kerlavage AR, Clayton RA, Sutton GG, et al. (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388: 539-547.
29. van Doorn LJ, Figueiredo C, Sanna R, Pena S, Midolo P, et al. (1998) Expanding allelic diversity of Helicobacter pylori vacA. J Clin Microbiol 36: 2597-2603.
30. Berg DE, Hoffman PS, Appelmelk BJ, Kusters JG, (1997) The Helicobacter pylori genome sequence: genetic factors for long life in the gastric mucosa. Trends Microbiol 5: 468-74.
31. Marshall DG, Coleman DC, Sullivan DJ, Xia H, O'Morain CA, et al. (1996) Genomic DNA fngerprinting of clinical isolates of Helicobacter pylori using oligonucleotide probes containing repetitive sequences. J Appl Bacteriol 81: 509-517.
32. Shortridge VD, Stone GG, Flamm RK, Beyer J, Versalovic J, et al. (1997) Molecular typing of Helicobacter pylori isolates from a multicenter US clinical trial by ureC restriction fragment length polymorphism. J Clin Microbiol 35: 471-473.
33. Yakoob J, Fan XG, Hu GL, Yang HX, Liu L, et al. (2000) Polycolonization of Helicobacter pylori among Chinese subjects. Clin Microbiol Infect 7: 187-192.
34. Kitamoto N, Nakamoto H, Katai A, Takahara N, Nakata H, et al. (1998) Heterogeneity of protein profiles of Helicobacter pylori isolated from individual patients. Helicobacter 3: 152-162.
35. Kuo CH, Poon SK, Su YC, Chang CS, Wang WC, (1999) Heterogeneous Helicobacter pylori isolates from H. pylori- infected couples in Taiwan. J Infect Dis 180: 2064-2068.
36. Miehlke S, Thomas R, Guiterrez O, Graham DY, Go MF, (1999) DNA Fingerprinting of Single Colonies of Helicobacter pylori from Gastric Cancer Patients Suggests Infection with a Single Predominant Strain. J Clin Microbiol 37: 245-247.
37. Burucoa C, Lhomme V, Fauchere JL, (1999) Performance criteria of DNA fingerprinting methods for Helicobacter pylori isolates: experimental results and meta-analysis. J Clin Microbiol 37: 4071-4080.
38. Berg DE, Akopyants NS, Kersulyte D, (1994) Fingerprinting microbial genomes using the RAPD or AP-PCR method. Methods Mol Cell Biol 5: 13-24.
39. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, et al. (1993) Current protocols in Molecular Biology. Greene Publishing Associates and Wiley Interscience.
40. Chattopadhyay S, Patra R, Ramamurthy T, Chowdhury A, Santra A, et al. (2004) Multiplex PCR assay for rapid detection and genotyping of Helicobacter pylori directly from biopsy specimens. J. Clin Microbiol 42: 2821-2824.
41. Yamaoka Y, Kodama T, Kashima K, Graham DY, Sepulveda AR, (1998) Variants of the 3′ region of the cagA gene in Helicobacter pylori from patients with different H. pylori associated diseases. J Clin Microbiol 36: 2258-2263.
42. Morales-Espinosa R, González-Valencia G, Delgado G, Méndez J L, Torres J, et al. (2008) Frequency and characterization of vapD gene in Helicobacter pylori strains of different vacA and cag-PAI genotype. Bioquimia 33: 43-50.
43. Owen RJ, Bickley J, Hurtado A, Fraser A, Pounder RE, (1994) Comparison of PCR-Based Restriction Fragment Length Polymorphism analysis of urease genes with rRNA gene profiling for monitoring Helicobacter pylori infections in patients on triple therapy. J Clin Microbiol 32: 1203-1210.
44. Han S, Zschausch H, Meyer H, Schneider T, Loos M, et al. (2000) Helicobacter pylori: Clonal population structure and restriction transmission within families revealed by molecular typing. J Clin Microbiol 38: 3646-3651.
45. Ito Y, Azuma T, Ito S, Suto H, Miyaji H, et al. (1998) Full length sequence analysis of the vacA gene from cytotoxic and noncytotoxic Helicobacter pylori. J Infect Dis 178: 1391-1398.
46. Mukhopadhyay AK, Kersulyte D, Jeong JY, Datta S, Ito Y, et al. (2000) Distinctiveness of genotypes of Helicobacter pylori in Calcutta, India. J Bacteriol 182: 3219-3227.
47. Azuma T, (2004) Helicobacter pylori CagA protein variation associated with gastric cancer in Asia. J Gastroenterol 39: 97-103.