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Volumn 66, Issue 2, 2014, Pages 115-121

Evidence for multiple MHC class II β loci in New Zealand's critically endangered kakapo, Strigops habroptilus

Author keywords

Diversity; Kakapo; Major histocompatibility complex; Strigops habroptilus

Indexed keywords

GENOMIC DNA; HLA ANTIGEN CLASS 2;

EID: 84897018995     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-013-0750-5     Document Type: Article
Times cited : (7)

References (44)
  • 1
    • 36149000117 scopus 로고    scopus 로고
    • Characterization, polymorphism, and evolution of MHC class II B genes in birds of prey
    • DOI 10.1007/s00239-007-9033-9
    • Alcaide M, Edwards SV, Negro JJ (2007) Characterization, polymorphism and evolution of MHC class II B genes in birds of prey. J Mol Evol 65:541-554 (Pubitemid 350115436)
    • (2007) Journal of Molecular Evolution , vol.65 , Issue.5 , pp. 541-554
    • Alcaide, M.1    Edwards, S.V.2    Negro, J.J.3
  • 2
    • 0037884727 scopus 로고    scopus 로고
    • MHC studies in nonmodel vertebrates: What have we learned about natural selection in 15 years?
    • DOI 10.1046/j.1420-9101.2003.00531.x
    • Bernatchez L, Landry C (2003) MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years? J Evol Biol 16:363-377 (Pubitemid 36567968)
    • (2003) Journal of Evolutionary Biology , vol.16 , Issue.3 , pp. 363-377
    • Bernatchez, L.1    Landry, C.2
  • 3
    • 34249781728 scopus 로고    scopus 로고
    • Low MHC variation in the endangered Galápagos penguin (Spheniscus mendiculus)
    • DOI 10.1007/s00251-007-0221-y
    • Bollmer JL, Herna Vargas F, Parker PG (2007) Low MHC variation in the endangered Galapagos penguin (Spheniscus mendiculus) . Immunogenetics 59:593-602 (Pubitemid 46850161)
    • (2007) Immunogenetics , vol.59 , Issue.7 , pp. 593-602
    • Bollmer, J.L.1    Vargas, F.H.2    Parker, P.G.3
  • 4
    • 77953858387 scopus 로고    scopus 로고
    • Extensive MHC class II B gene duplication in a passerine, the common yellowthroat (Geothlypis trichas)
    • Bollmer JL, Dunn PO, Whittingham LA, Wimpee C (2010) Extensive MHC class II B gene duplication in a passerine, the common yellowthroat (Geothlypis trichas) . J Hered 101:448-460
    • (2010) J Hered , vol.101 , pp. 448-460
    • Bollmer, J.L.1    Dunn, P.O.2    Whittingham, L.A.3    Wimpee, C.4
  • 5
    • 0027217789 scopus 로고
    • Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1
    • DOI 10.1038/364033a0
    • Brown JH, Jardetzky TS, Gorga JC, Stern LJ, Urban RG, Strominger JL, Wiley DC (1993) 3-Dimensional structure of the human class-II histocompatibility antigen HLA-DR1. Nature 364:33-39 (Pubitemid 23233452)
    • (1993) Nature , vol.364 , Issue.6432 , pp. 33-39
    • Brown, J.H.1    Jardetzky, T.S.2    Gorga, J.C.3    Stern, L.J.4    Urban, R.G.5    Strominger, J.L.6    Wiley, D.C.7
  • 7
    • 0000737399 scopus 로고    scopus 로고
    • Characterization and evolution of major histocompatibility complex (MHC) genes in non-model organisms, with examples from birds
    • Baker AJ (ed) Blackwell, Oxford
    • Edwards SV, Nusser J, Gasper J (2000) Characterization and evolution of major histocompatibility complex (MHC) genes in non-model organisms, with examples from birds. In: Baker AJ (ed) Molecular methods in ecology. Blackwell, Oxford, pp 168-207
    • (2000) Molecular Methods in Ecology , pp. 168-207
    • Edwards, S.V.1    Nusser, J.2    Gasper, J.3
  • 8
    • 77951973196 scopus 로고    scopus 로고
    • A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies
    • Galan M, Guivier E, Caraux G, Charbonnel N, Cosson J-F (2010) A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies. BMC Genomics 11:296
    • (2010) BMC Genomics , vol.11 , pp. 296
    • Galan, M.1    Guivier, E.2    Caraux, G.3    Charbonnel, N.4    Cosson, J.-F.5
  • 9
    • 33845873317 scopus 로고    scopus 로고
    • Mitochondrial genomes and avian phylogeny: Complex characters and resolvability without explosive radiations
    • DOI 10.1093/molbev/msl158
    • Gibb GC, Kardailsky O, Kimball RT, Braun EL, Penny D (2007) Mitochondrial genomes and avian phylogeny: complex characters and resolvability without explosive radiations. Mol Biol Evol 24: 269-280 (Pubitemid 46026300)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.1 , pp. 269-280
    • Gibb, G.C.1    Kardailsky, O.2    Kimball, R.T.3    Braun, E.L.4    Penny, D.5
  • 10
  • 11
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 12
    • 0028028910 scopus 로고
    • Evolutionary genetics of themajor histocompatibility complex
    • Hedrick PW (1994) Evolutionary genetics of themajor histocompatibility complex. Am Nat 143:945-964
    • (1994) Am Nat , vol.143 , pp. 945-964
    • Hedrick, P.W.1
  • 13
    • 48349124258 scopus 로고    scopus 로고
    • Highthroughput sequencing provides insights into genome variation and evolution in Salmonella typhi
    • Holt KE, Parkhill J, Mazzoni CJ, Roumagnac P, Weill FX et al (2008) Highthroughput sequencing provides insights into genome variation and evolution in Salmonella typhi. Nat Genet 40:987-993
    • (2008) Nat Genet , vol.40 , pp. 987-993
    • Holt, K.E.1    Parkhill, J.2    Mazzoni, C.J.3    Roumagnac, P.4    Weill, F.X.5
  • 14
    • 43049126454 scopus 로고    scopus 로고
    • Support for the minimal essential MHC hypothesis: A parrot with a single, highly polymorphic MHC class IIB gene
    • Hughes CR, Miles S, Walbroehl JM (2008) Support for the minimal essential MHC hypothesis: a parrot with a single, highly polymorphic MHC class IIB gene. Immunogenetics 60:219-231
    • (2008) Immunogenetics , vol.60 , pp. 219-231
    • Hughes, C.R.1    Miles, S.2    Walbroehl, J.M.3
  • 15
    • 0031678692 scopus 로고    scopus 로고
    • SplitsTree: A progam for analyzing and visualizing evolutionary data
    • Huson D (1998) SplitsTree: a progam for analyzing and visualizing evolutionary data. Bioinformatics 14:68-73
    • (1998) Bioinformatics , vol.14 , pp. 68-73
    • Huson, D.1
  • 16
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • DOI 10.1093/molbev/msj030
    • Huson D, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23:254-267 (Pubitemid 43100040)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.2 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 17
    • 0028987604 scopus 로고
    • A "minimal essential MHC and an unrecognized MHC": Two extremes in selection for polymorphism
    • Kaufman J, Völk H, Wallny H (1995) A "minimal essential MHC and an unrecognized MHC": two extremes in selection for polymorphism. Immunol Rev 143:63-88
    • (1995) Immunol Rev , vol.143 , pp. 63-88
    • Kaufman, J.1    Völk, H.2    Wallny, H.3
  • 21
    • 55149119144 scopus 로고    scopus 로고
    • Simple approach to reduce PCR artifact formation leads to reliable genotyping of MHC and other highly polymorphic loci - Implications for evolutionary analysis
    • Lenz T, Becker S (2008) Simple approach to reduce PCR artifact formation leads to reliable genotyping of MHC and other highly polymorphic loci - implications for evolutionary analysis. Gene 427:117-123
    • (2008) Gene , vol.427 , pp. 117-123
    • Lenz, T.1    Becker, S.2
  • 22
    • 65649117685 scopus 로고    scopus 로고
    • DNAsp v 5: A software for computational analysis of DNA polymorphism Data
    • Librado P, Rozas J (2009) DNAsp v 5: A software for computational analysis of DNA polymorphism Data. Bioinformatics 25:1451-1452
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 23
    • 0027530514 scopus 로고
    • Germ line maintenance of the pseudogene donor pool for somatic immunoglobulin gene conversion in chickens
    • McCormack WT, Hurley EA, Thompson CB (1993) Germ line maintenance of the pseudogene donor pool for somatic immunoglobulin gene conversion in chickens. Mol Cell Biol 13:821-830 (Pubitemid 23040247)
    • (1993) Molecular and Cellular Biology , vol.13 , Issue.2 , pp. 821-830
    • McCormack, W.T.1    Hurley, E.A.2    Thompson, C.B.3
  • 24
    • 0038236440 scopus 로고    scopus 로고
    • Minisatellite DNA profiling detects lineages and parentage in the endangered kakapo (Strigops habroptilus) despite low microsatellite DNAvariation
    • Miller HC, Lambert DM, Millar CD, Robertson BC, Minot EO (2003) Minisatellite DNA profiling detects lineages and parentage in the endangered kakapo (Strigops habroptilus) despite low microsatellite DNAvariation. Conserv Genet 4:265-273
    • (2003) Conserv Genet , vol.4 , pp. 265-273
    • Miller, H.C.1    Lambert, D.M.2    Millar, C.D.3    Robertson, B.C.4    Minot, E.O.5
  • 25
    • 79953831303 scopus 로고    scopus 로고
    • Characterisation of class II B MHC genes from a ratite bird, the little spotted kiwi (Apteryx owenii)
    • Miller HC, Bowker-Wright G, Kharkrang M, Ramstad K (2011) Characterisation of class II B MHC genes from a ratite bird, the little spotted kiwi (Apteryx owenii) . Immunogenetics 63:223-233
    • (2011) Immunogenetics , vol.63 , pp. 223-233
    • Miller, H.C.1    Bowker-Wright, G.2    Kharkrang, M.3    Ramstad, K.4
  • 26
    • 27744489155 scopus 로고    scopus 로고
    • The MHC of the duck (Anas platyrhynchos) contains five differentially expressed class I genes
    • Moon DA, Veniamin SM, Parks-Dely JA, Magor KE (2005) The MHC of the duck (Anas platyrhynchos) contains five differentially expressed class I genes. J Immunol 175:6702-6712 (Pubitemid 41598914)
    • (2005) Journal of Immunology , vol.175 , Issue.10 , pp. 6702-6712
    • Moon, D.A.1    Veniamin, S.M.2    Parks-Dely, J.A.3    Magor, K.E.4
  • 28
    • 33645736551 scopus 로고    scopus 로고
    • A parrot apart: The natural history of the kakapo (Strigops habroptilus), and the context of its conservation
    • Powlesland RG, Merton DV, Cockrem JF (2006) A parrot apart: the natural history of the kakapo (Strigops habroptilus), and the context of its conservation. Notornis 53:3-26
    • (2006) Notornis , vol.53 , pp. 3-26
    • Powlesland, R.G.1    Merton, D.V.2    Cockrem, J.F.3
  • 30
    • 0344668676 scopus 로고    scopus 로고
    • MHC diversity in two Acrocephalus species: The outbreed Great reed Warbler and the inbred Seychelles warbler
    • Richardson DS, Westerdahl H (2003) MHC diversity in two Acrocephalus species: the outbreed Great reed Warbler and the inbred Seychelles warbler. Mol Ecol 12:3253-3259
    • (2003) Mol Ecol , vol.12 , pp. 3253-3259
    • Richardson, D.S.1    Westerdahl, H.2
  • 31
    • 33645740969 scopus 로고    scopus 로고
    • The role of genetics in kakapo recovery
    • Robertson BC (2006) The role of genetics in kakapo recovery. Notornis 53:173-183
    • (2006) Notornis , vol.53 , pp. 173-183
    • Robertson, B.C.1
  • 32
    • 0037701843 scopus 로고    scopus 로고
    • Microsatellite primers for the kakapo (Strigops habroptilus) and their utility in other parrots
    • Robertson BC, Minot EO, Lambert DM (2000) Microsatellite primers for the kakapo (Strigops habroptilus) and their utility in other parrots. Cons Gen 1:93-95
    • (2000) Cons Gen , vol.1 , pp. 93-95
    • Robertson, B.C.1    Minot, E.O.2    Lambert, D.M.3
  • 34
    • 33845232923 scopus 로고    scopus 로고
    • Selection and recombination drive the evolution of MHC class II DRB diversity in ungulates
    • DOI 10.1038/sj.hdy.6800892, PII 6800892
    • Schaschl H, Wandeler P, Suchentrunk F, Obexer-Ruff G, Goodman SJ (2006) Selection and recombination drive the evolution of MHC class II DRB diversity in ungulates. Heredity 97:427-437 (Pubitemid 44851250)
    • (2006) Heredity , vol.97 , Issue.6 , pp. 427-437
    • Schaschl, H.1    Wandeler, P.2    Suchentrunk, F.3    Obexer-Ruff, G.4    Goodman, S.J.5
  • 35
    • 0001881618 scopus 로고
    • Preservation of avian blood and tissue samples for DNA analysis
    • Seutin G, White BN, Boag PT (1991) Preservation of avian blood and tissue samples for DNA analysis. Can J Zool 69:82-90
    • (1991) Can J Zool , vol.69 , pp. 82-90
    • Seutin, G.1    White, B.N.2    Boag, P.T.3
  • 38
    • 80054823536 scopus 로고    scopus 로고
    • Disentangling the roles of natural selection and genetic drift in shaping variation at MHC immunity genes
    • Sutton JT, Nakagawa S, Robertson BC, Jamieson IG (2011) Disentangling the roles of natural selection and genetic drift in shaping variation at MHC immunity genes. Mol Ecol 20:4408-4420
    • (2011) Mol Ecol , vol.20 , pp. 4408-4420
    • Sutton, J.T.1    Nakagawa, S.2    Robertson, B.C.3    Jamieson, I.G.4
  • 39
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599 (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 41
    • 0025923821 scopus 로고
    • Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material
    • Walsh PS, Metzger DA, Higuchi R (1991) Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10:506-513
    • (1991) Biotechniques , vol.10 , pp. 506-513
    • Walsh, P.S.1    Metzger, D.A.2    Higuchi, R.3
  • 42
    • 84883382706 scopus 로고    scopus 로고
    • Characterization, polymorphism and selection of major histocompatibility complex (MHC) DAB genes in vulnerable Chinese egret (Egretta eulophotes)
    • doi:10.1371/journal.pone.0074185
    • Wang Z, Zhou X, Lin Q, Fang W, Chen X (2013) Characterization, polymorphism and selection of major histocompatibility complex (MHC) DAB genes in vulnerable Chinese egret (Egretta eulophotes). PLoS ONE 8:e74185. doi:10.1371/journal.pone.0074185
    • (2013) PLoS ONE , vol.8
    • Wang, Z.1    Zhou, X.2    Lin, Q.3    Fang, W.4    Chen, X.5
  • 43
    • 3042698704 scopus 로고    scopus 로고
    • MHC class I typing in a songbird with numerous loci and high polymorphism using motif-specific PCR and DGGE
    • DOI 10.1038/sj.hdy.6800450
    • Westerdahl H, Wittzell H, von Schantz T, Bensch S (2004) MHC class I typing in a songbird with numerous loci and high polymorphism usingmotif-specific PCR and DGGE. Heredity 92:534-542. doi:10.1038/sj.hdy. 6800450 (Pubitemid 38847723)
    • (2004) Heredity , vol.92 , Issue.6 , pp. 534-542
    • Westerdahl, H.1    Wittzell, H.2    Von Schantz, T.3    Bensch, S.4


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