Poly(dimethylsiloxane)-based microdevices for studying plant reproduction

Biochemical Society Transactions

Volumn 42, Issue 2, 2014, Pages 320-324

  Arata, Hideyuki ^a   Higashiyama, Tetsuya ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

Microcage array; Microchannel; Ovule; Pollen tube; Poly(dimethylsiloxane)

Indexed keywords

DIMETICONE; BAYSILON;

BIOCOMPATIBILITY; IMAGING; MICROFLUIDICS; MICROTECHNOLOGY; NANOFABRICATION; NONHUMAN; OVULE; PLANT REPRODUCTION; POLLEN TUBE; POLLEN TUBE GROWTH; PRIORITY JOURNAL; PRODUCTIVITY; REVIEW; BIOLOGY; DEVICES; PHYSIOLOGY; REPRODUCTION;

BIOLOGY; DIMETHYLPOLYSILOXANES; OVULE; POLLEN TUBE; REPRODUCTION;

EID: 84896990948     PISSN: 03005127     EISSN: 14708752     Source Type: Journal    
DOI: 10.1042/BST20130258     Document Type: Review

References (50)

1. Noji, H., Yasuda, R., Yoshida, M. and Kinosita, Jr, K. (1997) Direct observation of the rotation of F1-ATPase. Nature 386, 299-302
2. Kitamura, K., Tokunaga, M., Iwane, A.H. and Yanagida, T. (1999) A single myosin head moves along an actin filament with regular steps of 5.3 nanometres. Nature 397, 129-134 (Pubitemid 29050909)
3. Luo, W., He, K., Xia, T. and Fang, X. (2013) Single-molecule monitoring in living cells by use of fluorescence microscopy. Anal. Bioanal. Chem. 405, 43-49
4. Hamamura, Y., Saito, C., Awai, C., Kurihara, D., Miyawaki, A., Nakagawa, T., Kanaoka, M.M., Sasaki, N., Nakano, A., Berger, F. and Higashiyama, T. (2011) Live-cell imaging reveals the dynamics of two sperm cells during double fertilization in Arabidopsis thaliana. Curr. Biol. 21, 497-502
5. Kurihara, D., Hamamura, Y. and Higashiyama, T. (2013) Live-cell analysis of plant reproduction: live-cell imaging, optical manipulation, and advanced microscopy technologies. Dev. Growth Differ. 55, 462-473
6. Trimmer, W.S. (ed.) (1997) Micromechanics and MEMS: Classic and Seminal Papers to 1990, IEEE Press, Piscataway
7. El-Ali, J., Sorger, P.K. and Jensen, K.F. (2006) Cells on chips. Nature 442, 403-411 (Pubitemid 44264784)
8. Ota, H. and Miki, N. (2013) Microtechnology-based three-dimensional spheroid formation. Front. Biosci. (Elite Ed.) 5, 37-48
9. Rondelez, Y., Tresset, G., Tabata, K.V., Arata, H., Fujita, H., Takeuchi, S. and Noji, H. (2005) Microfabricated arrays of femtoliter chambers allow single molecule enzymology. Nat. Biotechnol. 23, 361-365 (Pubitemid 41094426)
10. Arata, H.F., Noji, H. and Fujita, H. (2006) Motion control of single F1-ATPase rotary biomolecular motor using microfabricated local heating devices. Appl. Phys. Lett. 88, 083902
11. Arata, H.F., Gillot, F., Nojima, T., Fujii, T. and Fujita, H. (2008) Millisecond denaturation dynamics of fluorescent proteins revealed by femtoliter container on micro-thermodevice. Lab Chip 8, 1436-1440
12. Fujimoto, K., Kitamura, M., Yokokawa, M., Kanno, I., Kotera, H. and Yokokawa, R. (2013) Colocalization of quantum dots by reactive molecules carried by motor proteins on polarized microtubule arrays. ACS Nano 7, 447-455
13. Han, J. and Craighead, H.G. (2000) Separation of long DNA molecules in a microfabricated entropic trap array. Science 288, 1026-1029 (Pubitemid 30324230)
14. Arata, H.F., Gillot, F., Collard, D. and Fujita, H. (2009) Millisecond analysis of double stranded DNA with fluorescent intercalator by micro-thermocontrol-device. Talanta 79, 963-966
15. Collard, D. (2013) Silicon nanotweezers for biomechanical and bioelectrical assays. Front. Biosci. E5, 955-965
16. Yetisen, A.K., Jiang, L., Cooper, J.R., Qin, Y., Palanivelu, R. and Zohar, Y. (2011) J. Micromech. Microeng. 21, 054018
17. Agudelo, C.G., Nezhad, A.S., Ghanbari, M., Naghavi, M., Packirisamy, M. and Geitmann, A. (2013) TipChip: a modular, MEMS-based platform for experimentation and phenotyping of tip-growing cells. Plant J. 73, 1057-1068
18. Nezhad, A.S., Naghavi, M., Packirisamy, M., Bhat, R. and Geitmann, A. (2013) Quantification of cellular penetrative forces using lab-on-a-chip technology and finite element modeling. Proc. Natl. Acad. Sci. U.S.A. 110, 8093-8098
19. Meier, M., Lucchetta, E.M. and Ismagilov, R.F. (2010) Chemical stimulation of the Arabidopsis thaliana root using multi-laminar flow on a microfluidic chip. Lab Chip 10, 2147-2153
20. Grossmann, G., Guo, W-J., Ehrhardt, D.W., Frommer, W.B., Sit, R.V., Quake, S.R. and Meier, M. (2011) The RootChip: an integrated microfluidic chip for plant science. Plant Cell 23, 4234-4240
21. Arata, H.F. and Fujita, F. (2009) Miniaturized thermocontrol devices enable analysis of biomolecular behavior on their timescales, second to millisecond. Integr. Biol. 1, 363-370
22. Xia, Y. and Whitesides, G.M. (1998) Soft lithography. Angew. Chem. Int. Ed. 37, 550-575
23. Park, J. and Kim, B. (2012) 3D micro patterning on a concave substrate for creating the replica of a cylindrical PDMS stamp. Microelectron. Eng. 98, 540-543
24. Hosokawa, K., Sato, K., Ichikawa, N. and Maeda, M. (2004) Power-free poly(dimethylsiloxane) microfluidic devices for gold nanoparticle-based DNA analysis. Lab Chip 4, 181-185 (Pubitemid 38937582)
25. Arata, H., Komatsu, H., Hosokawa, K. and Maeda, M. (2012) Rapid and sensitive microRNA detection with laminar flow-assisted dendritic amplification on power-free microfluidic chip. PLoS ONE 7, e48329
26. McDonald, J.C. and Whitesides, G.M. (2002) Poly(dimethylsiloxane) as a material for fabricating microfluidic devices. Acc. Chem. Res. 35, 491-499
27. Arata, H.F., Rondelez, Y., Noji, H. and Fujita, H. (2005) Temperature alternation by an on-chip microheater to reveal enzymatic activity of β-galactosidase at high temperatures. Anal. Chem. 77, 4810-4814 (Pubitemid 41076670)
28. Escobar-Restrepo, J.M., Huck, N., Kessler, S., Gagliardini, V., Gheyselinck, J., Yang, W.C. and Grossniklaus, U. (2007) The FERONIA receptor-like kinase mediates male-female interactions during pollen tube reception. Science 317, 656-660 (Pubitemid 47229963)
29. Jones-Rhoades, M.W., Borevitz, J.O. and Preuss, D. (2007) Genome-wide expression profiling of the Arabidopsis female gametophyte identifies families of small, secreted proteins. PLoS Genet. 3, 1848-1861 (Pubitemid 350072051)
30. Shimizu, K.K. (2002) Ecology meets molecular genetics in Arabidopsis. Popul. Ecol. 44, 0221-0233
31. Okuda, S., Tsutsui, H., Shiina, K., Sprunck, S., Takeuchi, H., Yui, R., Kasahara, R.D., Hamamura, Y., Mizukami, A., Susaki, D. et al. (2009) Defensin-like polypeptide LUREs are pollen tube attractants secreted from synergid cells. Nature 458, 357-361
32. Goto, H., Okuda, S., Mizukami, A., Mori, H., Sasaki, N., Kurihara, D. and Higashiyama, T. (2011) Chemical visualization of an attractant peptide, LURE. Plant Cell Physiol. 52, 49-58
33. Higashiyama, T. and Inatsugi, R. (2006) Comparative analysis of biological models used in the study of pollen tube growth. Plant Cell Monogr. 3, 265-286
34. Horade, M., Kanaoka, M.M., Kuzuya, M., Higashiyama, T. and Kaji, N. (2013) A microfluidic device for quantitative analysis of chemoattraction in plants. RSC Adv. 3, 22301-22307
35. Lush, WM. (1999) Whither chemotropism and pollen tube guidance? Trends Plant Sci. 4, 413-418
36. Endress, P.K. (2011) Angiosperm ovules: diversity, development, evolution. Ann. Bot. 107, 1465-1489
37. Skinner, D.J., Hill, T.A. and Gasser, C.S. (2004) Regulation of ovule development. Plant Cell 16, S32-S45 (Pubitemid 38774215)
38. Willemsen, V. and Scheres, B. (2004) Mechanisms of pattern formation in plant embryogenesis. Annu. Rev. Genet. 38, 587-614 (Pubitemid 40013739)
39. Quint, M., Drost, H.-G., Gabel, A., Ullrich, K.K., Bönn, M. and Grosse, I. (2012) A transcriptomic hourglass in plant embryogenesis. Nature 490, 98-102
40. Park, J., Kurihara, D., Higashiyama, T. and Arata, H. (2014) Fabrication of microcage arrays to fix plant ovules for long-term live imaging and observation. Sens. Actuators B Chem. 191, 178-185
41. Kamei, Y., Suzuki, M., Watanabe, K., Fujimori, K., Kawasaki, T., Deguchi, T., Yoneda, Y., Todo, T., Takagi, S., Funatsu, T. and Yuba, S. (2009) Infrared laser-mediated gene induction in targeted single cells in vivo. Nat. Methods 6, 79-81
42. Ashkin, A., Dziedzic, J.M., Bjorkholm, J.E. and Chu, S. (1986) Observation of a single-beam gradient force optical trap for dielectric particles. Opt. Lett. 11, 288-290 (Pubitemid 16117701)
43. MacDonald, M.P., Paterson, L., Volke-Sepulveda, K., Arlt, J., Sibbett, W. and Dholakia, K. (2002) Creation and enhanced manipulation of 3-dimensional optically trapped structures. Science 296, 1101-1103 (Pubitemid 34517122)
44. Strick, T.R., Allemand, J.-F., Bensimon, D., Bensimon, A. and Croquette, V. (1996) The elasticity of a single supercoiled DNA molecule. Science 271, 1835-1837 (Pubitemid 26112307)
45. Arata, H., Dupont, A., Miné, J., Disseau, L., Renodon- Cornière, A., Takahashi, M., Viovy, J.L. and Cappello, G. (2009) Direct observation of twisting steps during Rad51 polymerization on DNA. Proc. Natl. Acad. Sci. U.S.A. 106, 19239-19244
46. Perkins, T.T., Quake, S.R., Smith, D.E. and Chu, S. (1994) Relaxation of a single DNA molecule observed by optical microscopy. Science 264, 822-826 (Pubitemid 24193447)
47. Roy, R., Hohng, S. and Ha, T. (2008) A practical guide to single-molecule FRET. Nat. Methods 5, 507-516 (Pubitemid 351761757)
48. Galletto, R., Amitani, I., Baskin, R.J. and Kowalczykowski, S.C. (2006) Direct observation of individual RecA filaments assembling on single DNA molecules. Nature 443, 875-878 (Pubitemid 44622700)
49. Varadan, V.K., Jiang, X. and Varadan, V.V. (2001) Microstereolithography and Other Fabrication Techniques for 3D MEMS, John Wiley and Sons, Chichester
50. Sulkin, M.S., Widder, E., Shao, C.C., Holzem, K.M., Gloschat, C., Gutbrod, S.R. and Efimov, I.R. (2013) Three-dimensional printing physiology laboratory technology. Am. J. Physiol. Heart Circ. Physiol. 305, H1559-H1573