-
1
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
2-s2.0-58249088751 10.1016/j.cell.2009.01.002
-
Bartel D. P., MicroRNAs: target recognition and regulatory functions. Cell 2009 136 2 215 233 2-s2.0-58249088751 10.1016/j.cell.2009.01.002
-
(2009)
Cell
, vol.136
, Issue.2
, pp. 215-233
-
-
Bartel, D.P.1
-
2
-
-
60149095444
-
Most mammalian mRNAs are conserved targets of microRNAs
-
2-s2.0-60149095444 10.1101/gr.082701.108
-
Friedman R. C., Farh K. K., Burge C. B., Bartel D. P., Most mammalian mRNAs are conserved targets of microRNAs. Genome Research 2009 19 1 92 105 2-s2.0-60149095444 10.1101/gr.082701.108
-
(2009)
Genome Research
, vol.19
, Issue.1
, pp. 92-105
-
-
Friedman, R.C.1
Farh, K.K.2
Burge, C.B.3
Bartel, D.P.4
-
3
-
-
67349123973
-
Redefining MicroRNA targets
-
2-s2.0-67349123973 10.1016/j.cub.2009.03.059
-
Seitz H., Redefining MicroRNA targets. Current Biology 2009 19 10 870 873 2-s2.0-67349123973 10.1016/j.cub.2009.03.059
-
(2009)
Current Biology
, vol.19
, Issue.10
, pp. 870-873
-
-
Seitz, H.1
-
4
-
-
77957766910
-
Desperately seeking microRNA targets
-
2-s2.0-77957766910 10.1038/nsmb.1921
-
Thomas M., Lieberman J., Lal A., Desperately seeking microRNA targets. Nature Structural and Molecular Biology 2010 17 10 1169 1174 2-s2.0-77957766910 10.1038/nsmb.1921
-
(2010)
Nature Structural and Molecular Biology
, vol.17
, Issue.10
, pp. 1169-1174
-
-
Thomas, M.1
Lieberman, J.2
Lal, A.3
-
5
-
-
77955644289
-
Mammalian microRNAs predominantly act to decrease target mRNA levels
-
2-s2.0-77955644289 10.1038/nature09267
-
Guo H., Ingolia N. T., Weissman J. S., Bartel D. P., Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 2010 466 7308 835 840 2-s2.0-77955644289 10.1038/nature09267
-
(2010)
Nature
, vol.466
, Issue.7308
, pp. 835-840
-
-
Guo, H.1
Ingolia, N.T.2
Weissman, J.S.3
Bartel, D.P.4
-
6
-
-
79961170994
-
A ceRNA hypothesis: The rosetta stone of a hidden RNA language?
-
2-s2.0-79961170994 10.1016/j.cell.2011.07.014
-
Salmena L., Poliseno L., Tay Y., Kats L., Pandolfi P. P., A ceRNA hypothesis: the rosetta stone of a hidden RNA language? Cell 2011 146 3 353 358 2-s2.0-79961170994 10.1016/j.cell.2011.07.014
-
(2011)
Cell
, vol.146
, Issue.3
, pp. 353-358
-
-
Salmena, L.1
Poliseno, L.2
Tay, Y.3
Kats, L.4
Pandolfi, P.P.5
-
7
-
-
84876918181
-
Deciphering the rules of ceRNA networks
-
10.1073/pnas.1305322110
-
Cesana M., Daley G. Q., Deciphering the rules of ceRNA networks. Proceedings of the National Academy of Sciences 2013 110 18 7112 7113 10.1073/pnas.1305322110
-
(2013)
Proceedings of the National Academy of Sciences
, vol.110
, Issue.18
, pp. 7112-7113
-
-
Cesana, M.1
Daley, G.Q.2
-
8
-
-
77953957633
-
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
-
2-s2.0-77953957633 10.1038/nature09144
-
Poliseno L., Salmena L., Zhang J., Carver B., Haveman W. J., Pandolfi P. P., A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature 2010 465 7301 1033 1038 2-s2.0-77953957633 10.1038/nature09144
-
(2010)
Nature
, vol.465
, Issue.7301
, pp. 1033-1038
-
-
Poliseno, L.1
Salmena, L.2
Zhang, J.3
Carver, B.4
Haveman, W.J.5
Pandolfi, P.P.6
-
9
-
-
80054715378
-
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA
-
2-s2.0-80054715378 10.1016/j.cell.2011.09.028
-
Cesana M., Cacchiarelli D., Legnini I., Santini T., Sthandier O., Chinappi M., Tramontano A., Bozzoni I., A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. Cell 2011 147 2 358 369 2-s2.0-80054715378 10.1016/j.cell.2011.09.028
-
(2011)
Cell
, vol.147
, Issue.2
, pp. 358-369
-
-
Cesana, M.1
Cacchiarelli, D.2
Legnini, I.3
Santini, T.4
Sthandier, O.5
Chinappi, M.6
Tramontano, A.7
Bozzoni, I.8
-
10
-
-
78149303249
-
MicroRNA sponges: Progress and possibilities
-
2-s2.0-78149303249 10.1261/rna.2414110
-
Ebert M. S., Sharp P. A., MicroRNA sponges: progress and possibilities. RNA 2010 16 11 2043 2050 2-s2.0-78149303249 10.1261/rna.2414110
-
(2010)
RNA
, vol.16
, Issue.11
, pp. 2043-2050
-
-
Ebert, M.S.1
Sharp, P.A.2
-
11
-
-
80054681545
-
In vivo identification of tumor-suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma
-
2-s2.0-80054681545 10.1016/j.cell.2011.09.032
-
Karreth F. A., Tay Y., Perna D., Ala U., Tan S. M., Rust A. G., Denicola G., Webster K. A., Weiss D., Perez-Mancera P. A., Krauthammer M., Halaban R., Provero P., Adams D. J., Tuveson D. A., Pandolfi P. P., In vivo identification of tumor-suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma. Cell 2011 147 2 382 395 2-s2.0-80054681545 10.1016/j.cell.2011.09.032
-
(2011)
Cell
, vol.147
, Issue.2
, pp. 382-395
-
-
Karreth, F.A.1
Tay, Y.2
Perna, D.3
Ala, U.4
Tan, S.M.5
Rust, A.G.6
Denicola, G.7
Webster, K.A.8
Weiss, D.9
Perez-Mancera, P.A.10
Krauthammer, M.11
Halaban, R.12
Provero, P.13
Adams, D.J.14
Tuveson, D.A.15
Pandolfi, P.P.16
-
12
-
-
80054700538
-
Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs
-
2-s2.0-80054700538 10.1016/j.cell.2011.09.029
-
Tay Y., Kats L., Salmena L., Weiss D., Tan S. M., Ala U., Karreth F., Poliseno L., Provero P., Di Cunto F., Lieberman J., Rigoutsos I., Pandolfi P. P., Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs. Cell 2011 147 2 344 357 2-s2.0-80054700538 10.1016/j.cell.2011.09.029
-
(2011)
Cell
, vol.147
, Issue.2
, pp. 344-357
-
-
Tay, Y.1
Kats, L.2
Salmena, L.3
Weiss, D.4
Tan, S.M.5
Ala, U.6
Karreth, F.7
Poliseno, L.8
Provero, P.9
Di Cunto, F.10
Lieberman, J.11
Rigoutsos, I.12
Pandolfi, P.P.13
-
13
-
-
80054689794
-
An extensive MicroRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma
-
2-s2.0-80054689794 10.1016/j.cell.2011.09.041
-
Sumazin P., Yang X., Chiu H. S., Chung W. J., Iyer A., Llobet-Navas D., Rajbhandari P., Bansal M., Guarnieri P., Silva J., Califano A., An extensive MicroRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. Cell 2011 147 2 370 381 2-s2.0-80054689794 10.1016/j.cell.2011.09.041
-
(2011)
Cell
, vol.147
, Issue.2
, pp. 370-381
-
-
Sumazin, P.1
Yang, X.2
Chiu, H.S.3
Chung, W.J.4
Iyer, A.5
Llobet-Navas, D.6
Rajbhandari, P.7
Bansal, M.8
Guarnieri, P.9
Silva, J.10
Califano, A.11
-
14
-
-
79955598536
-
Expression of CD44 3′-untranslated region regulates endogenous microRNA functions in tumorigenesis and angiogenesis
-
2-s2.0-79955598536 10.1093/nar/gkq1003
-
Jeyapalan Z., Deng Z., Shatseva T., Fang L., He C., Yang B. B., Expression of CD44 3′-untranslated region regulates endogenous microRNA functions in tumorigenesis and angiogenesis. Nucleic Acids Research 2011 39 8 3026 3041 2-s2.0-79955598536 10.1093/nar/gkq1003
-
(2011)
Nucleic Acids Research
, vol.39
, Issue.8
, pp. 3026-3041
-
-
Jeyapalan, Z.1
Deng, Z.2
Shatseva, T.3
Fang, L.4
He, C.5
Yang, B.B.6
-
15
-
-
78149442860
-
Expression of versican 3′-untranslated region modulates endogenous microrna functions
-
2-s2.0-78149442860 10.1371/journal.pone.0013599 e13599
-
Lee D. Y., Jeyapalan Z., Fang L., Yang J., Zhang Y., Yee A. Y., Li M., Du W. W., Shatseva T., Yang B. B., Expression of versican 3′-untranslated region modulates endogenous microrna functions. PLoS ONE 2010 5 10 2-s2.0-78149442860 10.1371/journal.pone.0013599 e13599
-
(2010)
PLoS ONE
, vol.5
, Issue.10
-
-
Lee, D.Y.1
Jeyapalan, Z.2
Fang, L.3
Yang, J.4
Zhang, Y.5
Yee, A.Y.6
Li, M.7
Du, W.W.8
Shatseva, T.9
Yang, B.B.10
-
16
-
-
77956542998
-
CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer
-
2-s2.0-77956542998 10.1093/nar/gkq285
-
Wang J., Liu X., Wu H., Ni P., Gu Z., Qiao Y., Chen N., Sun F., Fan Q., CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer. Nucleic Acids Research 2010 38 16 5366 5383 2-s2.0-77956542998 10.1093/nar/gkq285
-
(2010)
Nucleic Acids Research
, vol.38
, Issue.16
, pp. 5366-5383
-
-
Wang, J.1
Liu, X.2
Wu, H.3
Ni, P.4
Gu, Z.5
Qiao, Y.6
Chen, N.7
Sun, F.8
Fan, Q.9
-
17
-
-
84874634893
-
A long non-coding RNA, PTCSC3, as a tumor suppressor and a target of miRNAs in thyroid cancer cells
-
Fan M., Li X., Jiang W., Huang Y., Li J., Wang Z., A long non-coding RNA, PTCSC3, as a tumor suppressor and a target of miRNAs in thyroid cancer cells. Experimental and Therapeutic Medicine 2013 5 4 1143 1146
-
(2013)
Experimental and Therapeutic Medicine
, vol.5
, Issue.4
, pp. 1143-1146
-
-
Fan, M.1
Li, X.2
Jiang, W.3
Huang, Y.4
Li, J.5
Wang, Z.6
-
18
-
-
84894865229
-
A ceRNA analysis on LMNA gene focusing on the Hutchinson-Gilford progeria syndrome
-
10.1186/2043-9113-3-2
-
Arancio W., Giordano C., Pizzolanti G., A ceRNA analysis on LMNA gene focusing on the Hutchinson-Gilford progeria syndrome. Journal of Clinical Bioinformatics 2013 3 1, article 2 10.1186/2043-9113-3-2
-
(2013)
Journal of Clinical Bioinformatics
, vol.3
-
-
Arancio, W.1
Giordano, C.2
Pizzolanti, G.3
-
19
-
-
77953798171
-
Down-regulation of a host MicroRNA by a herpesvirus saimiri noncoding RNA
-
2-s2.0-77953798171 10.1126/science.1187197
-
Cazalla D., Yario T., Steitz J., Down-regulation of a host MicroRNA by a herpesvirus saimiri noncoding RNA. Science 2010 328 5985 1563 1566 2-s2.0-77953798171 10.1126/science.1187197
-
(2010)
Science
, vol.328
, Issue.5985
, pp. 1563-1566
-
-
Cazalla, D.1
Yario, T.2
Steitz, J.3
-
20
-
-
84876899530
-
Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments
-
10.1073/pnas.1222509110
-
Ala U., Karreth F. A., Bosia C., Pagnani A., Taulli R., Léopold V., Tay Y., Provero P., Zecchina R., Pandolfi P. P., Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments. Proceedings of the National Academy of Sciences 2013 110 18 7154 7159 10.1073/pnas.1222509110
-
(2013)
Proceedings of the National Academy of Sciences
, vol.110
, Issue.18
, pp. 7154-7159
-
-
Ala, U.1
Karreth, F.A.2
Bosia, C.3
Pagnani, A.4
Taulli, R.5
Léopold, V.6
Tay, Y.7
Provero, P.8
Zecchina, R.9
Pandolfi, P.P.10
-
21
-
-
84879486402
-
Modelling competing endogenous RNA networks
-
Bosia C., Pagnani A., Zecchina R., Modelling competing endogenous RNA networks. PLoS ONE 2013 8 6 e66609
-
(2013)
PLoS ONE
, vol.8
, Issue.6
-
-
Bosia, C.1
Pagnani, A.2
Zecchina, R.3
-
22
-
-
84876167066
-
Competing endogenous RNA database
-
10.6026/97320630008731
-
Sarver A., Subramanian S., Competing endogenous RNA database. Bioinformation 2012 8 15 731 733 10.6026/97320630008731
-
(2012)
Bioinformation
, vol.8
, Issue.15
, pp. 731-733
-
-
Sarver, A.1
Subramanian, S.2
-
23
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
10.1101/gr.132159.111
-
Derrien T., Johnson R., Bussotti G., Tanzer A., Djebali S., Tilgner H., Guernec G., Martin D., Merkel A., Knowles D. G., Lagarde J., Veeravalli L., Ruan X., Ruan Y., Lassmann T., Carninci P., Brown J. B., Lipovich L., Gonzalez J. M., Thomas M., Davis C. A., Shiekhattar R., Gingeras T. R., Hubbard T. J., Notredame C., Harrow J., Guigó R., The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Research 2012 22 9 1775 1789 10.1101/gr.132159.111
-
(2012)
Genome Research
, vol.22
, Issue.9
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
Guernec, G.7
Martin, D.8
Merkel, A.9
Knowles, D.G.10
Lagarde, J.11
Veeravalli, L.12
Ruan, X.13
Ruan, Y.14
Lassmann, T.15
Carninci, P.16
Brown, J.B.17
Lipovich, L.18
Gonzalez, J.M.19
Thomas, M.20
Davis, C.A.21
Shiekhattar, R.22
Gingeras, T.R.23
Hubbard, T.J.24
Notredame, C.25
Harrow, J.26
Guigó, R.27
more..
-
24
-
-
78649467088
-
Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells
-
2-s2.0-78649467088 10.1038/ng.710
-
Loewer S., Cabili M. N., Guttman M., Loh Y., Thomas K., Park I. H., Garber M., Curran M., Onder T., Agarwal S., Manos P. D., Datta S., Lander E. S., Schlaeger T. M., Daley G. Q., Rinn J. L., Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells. Nature Genetics 2010 42 12 1113 1117 2-s2.0-78649467088 10.1038/ng.710
-
(2010)
Nature Genetics
, vol.42
, Issue.12
, pp. 1113-1117
-
-
Loewer, S.1
Cabili, M.N.2
Guttman, M.3
Loh, Y.4
Thomas, K.5
Park, I.H.6
Garber, M.7
Curran, M.8
Onder, T.9
Agarwal, S.10
Manos, P.D.11
Datta, S.12
Lander, E.S.13
Schlaeger, T.M.14
Daley, G.Q.15
Rinn, J.L.16
-
25
-
-
80052869283
-
LincRNAs act in the circuitry controlling pluripotency and differentiation
-
2-s2.0-80052869283 10.1038/nature10398
-
Guttman M., Donaghey J., Carey B. W., Garber M., Grenier J. K., Munson G., Young G., Lucas A. B., Ach R., Bruhn L., Yang X., Amit I., Meissner A., Regev A., Rinn J. L., Root D. E., Lander E. S., LincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011 477 7364 295 300 2-s2.0-80052869283 10.1038/nature10398
-
(2011)
Nature
, vol.477
, Issue.7364
, pp. 295-300
-
-
Guttman, M.1
Donaghey, J.2
Carey, B.W.3
Garber, M.4
Grenier, J.K.5
Munson, G.6
Young, G.7
Lucas, A.B.8
Ach, R.9
Bruhn, L.10
Yang, X.11
Amit, I.12
Meissner, A.13
Regev, A.14
Rinn, J.L.15
Root, D.E.16
Lander, E.S.17
-
26
-
-
84865138690
-
MiRcode: A map of putative microRNA target sites in the long non-coding transcriptome
-
10.1093/bioinformatics/bts344
-
Jeggari A., Marks D. S., Larsson E., miRcode: a map of putative microRNA target sites in the long non-coding transcriptome. Bioinformatics 2012 28 15 2062 2063 10.1093/bioinformatics/bts344
-
(2012)
Bioinformatics
, vol.28
, Issue.15
, pp. 2062-2063
-
-
Jeggari, A.1
Marks, D.S.2
Larsson, E.3
-
27
-
-
84881146602
-
Long noncoding RNAs: New players in the molecular mechanism for maintenance and differentiation of pluripotent stem cells
-
10.1089/scd.2013.0014
-
Ghosal S., Das S., Chakrabarti J., Long noncoding RNAs: new players in the molecular mechanism for maintenance and differentiation of pluripotent stem cells. Stem Cells and Development 2013 22 16 2240 2253 10.1089/scd.2013.0014
-
(2013)
Stem Cells and Development
, vol.22
, Issue.16
, pp. 2240-2253
-
-
Ghosal, S.1
Das, S.2
Chakrabarti, J.3
-
28
-
-
84876367541
-
Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal
-
10.1016/j.devcel.2013.03.002
-
Wang Y., Xu Z., Jiang J., Xu C., Kang J., Xiao L., Wu M., Xiong J., Guo X., Liu H., Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal. Developmental Cell 2013 25 1 69 80 10.1016/j.devcel.2013.03.002
-
(2013)
Developmental Cell
, vol.25
, Issue.1
, pp. 69-80
-
-
Wang, Y.1
Xu, Z.2
Jiang, J.3
Xu, C.4
Kang, J.5
Xiao, L.6
Wu, M.7
Xiong, J.8
Guo, X.9
Liu, H.10
-
29
-
-
84884735952
-
Circular RNA and miR-7 in cancer
-
10.1158/0008-5472.CAN-13-1568
-
Hansen T. B., Kjems J., Damgaard C. K., Circular RNA and miR-7 in cancer. Cancer Research 2013 73 18 5609 5612 10.1158/0008-5472.CAN-13-1568
-
(2013)
Cancer Research
, vol.73
, Issue.18
, pp. 5609-5612
-
-
Hansen, T.B.1
Kjems, J.2
Damgaard, C.K.3
-
30
-
-
84892402186
-
Circ2Traits: A comprehensive database for circular RNA potentially associated with disease and traits
-
article 283 10.3389/fgene.2013.00283
-
Ghosal S., Das S., Sen R., Basak P., Chakrabarti J., Circ2Traits: a comprehensive database for circular RNA potentially associated with disease and traits. Frontiers in Genetics 2013 4 article 283 10.3389/fgene.2013.00283
-
(2013)
Frontiers in Genetics
, vol.4
-
-
Ghosal, S.1
Das, S.2
Sen, R.3
Basak, P.4
Chakrabarti, J.5
-
31
-
-
20444460289
-
MicroRNA expression profiles classify human cancers
-
10.1038/nature03702
-
Lu J., Getz G., Miska E. A., Alvarez-Saavedra E., Lamb J., Peck D., Sweet-Cordero A., Ebert B. L., Mak R. H., Ferrando A. A., Downing J. R., Jacks T., Horvitz H. R., Golub T. R., MicroRNA expression profiles classify human cancers. Nature 2005 435 7043 834 838 10.1038/nature03702
-
(2005)
Nature
, vol.435
, Issue.7043
, pp. 834-838
-
-
Lu, J.1
Getz, G.2
Miska, E.A.3
Alvarez-Saavedra, E.4
Lamb, J.5
Peck, D.6
Sweet-Cordero, A.7
Ebert, B.L.8
Mak, R.H.9
Ferrando, A.A.10
Downing, J.R.11
Jacks, T.12
Horvitz, H.R.13
Golub, T.R.14
|