Community annotation and the evolution of cooperation: How patience matters

Open Bioinformatics Journal

Volumn 7, Issue 1, 2013, Pages 9-18

  Basuchoudhary, Atin ^a   Simoyan, Vahan ^b   Mazumder, Raja ^c  

^a VIRGINIA MILITARY INSTITUTE   (United States)

^b CENTER FOR BIOLOGICS EVALUATION AND RESEARCH   (United States)

^c GEORGE WASHINGTON UNIVERSITY SCHOOL OF MEDICINE AND HEALTH SCIENCES   (United States)

Author keywords

Biocuration; Community annotation; Cooperation

Indexed keywords

ARTICLE; BEHAVIOR; COMMUNITY; COMPUTER MODEL; COMPUTER SIMULATION; COOPERATION; COST; FITNESS; GAME; HUMAN; MATHEMATICAL MODEL; PATIENCE; POPULATION; PREDICTION; PRIORITY JOURNAL; SOCIAL INTERACTION; THEORETICAL MODEL;

EID: 84896836477     PISSN: None     EISSN: 18750362     Source Type: Journal    
DOI: 10.2174/1875036201307010009     Document Type: Article

References (37)

1. J. Vukov, F. L. Pinheiro, F. C. Santos, and J. M. Pacheco, "Reward from punishment does not emerge at all costs, " PLoS Comput. Biol., vol. 9, p. e1002868, 2013.
2. R. Mazumder, D. A. Natale, J. A. Julio, L. S. Yeh, and C. H. Wu, "Community annotation in biology, " Biol Direct, vol. 5, p. 12, 2010.
3. T. Clark and J. Kinoshita, "Alzforum and SWAN: the present and future of scientific web communities, " Brief Bioinform, vol. 8, pp. 163-171, 2007.
4. S. L. Salzberg, "Genome re-annotation: a wiki solution?, " Genome Biol., vol. 8, p. 102, 2007.
5. K. Wang, "Gene-function wiki would let biologists pool worldwide resources, " Nature, vol. 439, p. 534, 2006.
6. J. Giles, "Key biology databases go wiki, " Nature, vol. 445, p. 691, 2007.
7. J. Thornton, "Annotations for all by all-the BioSapiens network, " Genome Biol., vol. 10, p. 401, 2009.
8. B. Mons, M. Ashburner, C. Chichester, E. van Mulligen, M. Weeber, J. den Dunnen, G. J. van Ommen, M. Musen, M. Cockerill, H. Hermjakob, A. Mons, A. Packer, R. Pacheco, S. Lewis, A. Berkeley, W. Melton, N. Barris, J. Wales, G. Meijssen, E. Moeller, P. J. Roes, K. Borner, and A. Bairoch, "Calling on a million minds for community annotation in WikiProteins, " Genome Biol., vol. 9, p. R89, 2008.
9. R. Hoffmann, "A wiki for the life sciences where authorship matters, " Nat. Genet., vol. 40, pp. 1047-1051, 2008.
10. H. Stehr, J. M. Duarte, M. Lappe, J. Bhak, and D. M. Bolser, "PDBWiki: added value through community annotation of the Protein Data Bank, " Database (Oxford), vol. 2010, p. baq009, 2010.
11. J. Daub, P. P. Gardner, J. Tate, D. Ramskold, M. Manske, W. G. Scott, Z. Weinberg, S. Griffiths-Jones, and A. Bateman, "The RNA WikiProject: community annotation of RNA families, " RNA, vol. 14, pp. 2462-2464, 2008.
12. J. E. Loveland, J. G. Gilbert, E. Griffiths, and J. L. Harrow, "Community gene annotation in practice, " Database (Oxford), vol. 2012, p. bas009, 2012.
13. V. Guignon, G. Droc, M. Alaux, F. C. Baurens, O. Garsmeur, C. Poiron, T. Carver, M. Rouard, and S. Bocs, "Chado controller: advanced annotation management with a community annotation system, " Bioinformatics, vol. 28, pp. 1054-1056, 2012.
14. B. M. Good, E. L. Clarke, L. de Alfaro, and A. I. Su, "The Gene Wiki in 2011: community intelligence applied to human gene annotation, " Nucleic Acids Res., vol. 40, pp. D1255-1261, 2012.
15. P. P. Gardner, J. Daub, J. Tate, B. L. Moore, I. H. Osuch, S. Griffiths-Jones, R. D. Finn, E. P. Nawrocki, D. L. Kolbe, S. R. Eddy, and A. Bateman, "Rfam: Wikipedia, clans and the "decimal" release, " Nucleic Acids Res., vol. 39, pp. D141-145, 2011.
16. G. M. Dall'Olio, J. Bertranpetit, and H. Laayouni, "The annotation and the usage of scientific databases could be improved with public issue tracker software, " Database (Oxford), p. baq035, 2010.
17. R. D. Finn, P. P. Gardner, and A. Bateman, "Making your database available through Wikipedia: the pros and cons, " Nucleic Acids Res., vol. 40, pp. D9-12, 2012.
18. O. S. Curry, M. E. Price, and J. G. Price, Patience is a virtue: cooperative people have lower discount rates. Personal Individual Differences, vol. 44, pp. 778-783, 2008.
19. D. Fudenberg and E. Maskin, "The folk theorem In repeated games with discounting or with incomplete information., " Econometrica, vol. 54, pp. 533-554, 1986.
20. Y. Lengwiler, "Heterogeneous patience and the term structure of real interest rates., " Am. Econ. Rev., pp. 890-896, 2005.
21. N. Wilkinson, "An introduction to behavioral economics. " New Palgrave Macmillan, York, NY, pp. 189-263, 2008.
22. J. T. Warner and S. Pleeter, "The personal discount rate: Evidence from military downsizing programs., " Am. Econ. Rev., vol. 91, pp. 33-53, 2001.
23. G. Clark, A farewell to alms. Princeton University Press: Princeton, NJ. 2007.
24. A. Basuchoudhary, T. Siemers, and A. Sam, "Civilization and the evolution of short sighted agents, " Va Econ. J., pp. 11-29, 2010.
25. P. Dal-Bo and R. F. Guillaume, "The Evolution of cooperation in infinitely repeated games: Experimental evidence., " Am. Econ. Rev., vol. 101, pp. 411-429, 2011.
26. J. Duffy and J. Ochs, "Cooperative behavior and the frequency of Social interaction., " Games Econ. Behav., vol. 66, pp. 785-812, 2009.
27. H. T. Normann and B. Wallace, The impact of the termination rule on cooperation in a prisoner's dilemma experiment. Int. J. Game Theory, vol. 41, pp. 707-718, 2011.
28. E. Boutet, D. Lieberherr, M. Tognolli, M. Schneider, and A. Bairoch, "UniProtKB/Swiss-Prot, " Methods Mol. Biol., vol. 406, pp. 89-112, 2007.
29. A. Bairoch, B. Boeckmann, S. Ferro, and E. Gasteiger, "Swiss-Prot: juggling between evolution and stability, " Brief Bioinform, vol. 5, pp. 39-55, Mar 2004.
30. J. M. Smith, Evolution and the theory of games. Cambridge University Press, Cambridge 1982.
31. H. Gintis, Game theory evolving. Princeton University Press, Princeton 2000.
32. T. Sandler, "Collective Action and Transnational Terrorism, " World Econ., vol. 26, pp. 779-802, 2003.
33. J. Bendor and P. Swistak, "The evolutionary stability of cooperation., " Am. Polit. Sci. Rev., vol. 91, pp. 290-307, 1997.
34. M. Milinski, "Tit for tat in sticklebacks and the evolution of cooperation, " Nature, vol. 325, pp. 433-435, 1987.
35. G. J. Mailath, L. Samuelson, and A. Shaked, "Endogenous interactions., " In: CARESS Working Papres endo-one, University of Pennsylvania Center for Analytic Research and Economics in the Social Sciences, USA 1997.
36. J. E. Harrington, Games, strategies and decision making. Worth, New York: 2009.
37. M. Nowak and R. Highfield, SuperCooperators: Altruism, evolution, and why we need each other to succeed. New York: A division of Simon and Schuster, Inc., Free Press 2011.