Chado controller: Advanced annotation management with a community annotation system

Bioinformatics

Volumn 28, Issue 7, 2012, Pages 1054-1056

  Guignon, Valentin ^a,b   Droc, Gaëtan ^a   Alaux, Michael ^c   Baurens, Franc Christophe ^a   Garsmeur, Olivier ^a   Poiron, Claire ^a,e   Carver, Tim ^d   Rouard, Mathieu ^b   Bocs, Stéphanie ^a  

^a UMR AGAP   (France)

^b BIOVERSITY INTERNATIONAL   (Italy)

^c Centre de recherche de Versailles   (France)

^d WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^e UMR 9002 CNRS UM   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGY; COMPUTER PROGRAM; DATA BASE; GENOMICS; LINGUISTICS; METHODOLOGY; MOLECULAR GENETICS;

COMPUTATIONAL BIOLOGY; DATABASE MANAGEMENT SYSTEMS; GENOMICS; MOLECULAR SEQUENCE ANNOTATION; SOFTWARE; VOCABULARY, CONTROLLED;

EID: 84859236432     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts046     Document Type: Article

References (11)

1. Bocs, S. et al. (2010) Mechanisms of haplotype divergence at the RGA08 nucleotidebinding leucine-rich repeat gene locus in wild banana (Musa balbisiana). BMC Plant Biol., 10, 149.
2. Carver, T. et al. (2008) Artemis andACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics, 24, 2672-2676.
3. Flicek, P. et al. (2011) Ensembl 2011. Nucleic Acids Res., 39, D800-D806.
4. Fujita, P.A. et al. (2011) The UCSC Genome Browser database: update 2011. Nucleic Acids Res., 39, D876-D882.
5. Garsmeur, O. et al. (2011) High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane. New Phytol., 189, 629-642.
6. Legeai, F. et al. (2010) AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome. Insect Mol. Biol., 19 (Suppl. 2), 5-12.
7. Lewis, S.E. et al. (2002) Apollo: a sequence annotation editor. Genome Biol., 3, RESEARCH0082.
8. Mungall, C.J. and Emmert, D.B. (2007)AChado case study: an ontology-based modular schema for representing genome-associated biological information. Bioinformatics, 23, i337-i346.
9. St Pierre, S. and McQuilton, P. (2009) Inside FlyBase: biocuration as a career. Fly (Austin), 3, 112-114.
10. Stein, L.D. et al. (2002) The generic genome browser: a building block for a model organism system database. Genome Res., 12, 1599-1610.
11. Vallenet, D. et al. (2006) MaGe: a microbial genome annotation system supported by synteny results. Nucleic Acids Res., 34, 53-65.