-
1
-
-
84875078436
-
-
WTSI
-
WTSI. http://www.sanger.ac.uk/.
-
-
-
-
2
-
-
84875072119
-
-
Havana
-
Havana. http://www.sanger.ac.uk/research/projects/vertebrate genome/havana/.
-
-
-
-
3
-
-
84875081643
-
-
Vega
-
Vega. http:///vega.sanger.ac.uk.
-
-
-
-
4
-
-
0035408587
-
Genome annotation: From sequence to biology
-
DOI 10.1038/35080529
-
Stein, L. (2001) Genome annotation: From sequence to biology. Nat. Rev. Genet., 2, 493-503. (Pubitemid 33674023)
-
(2001)
Nature Reviews Genetics
, vol.2
, Issue.7
, pp. 493-503
-
-
Stein, L.1
-
5
-
-
84875083633
-
-
Flybase. http://flybase.org/.
-
-
-
-
6
-
-
84875071127
-
-
Wormbase. http://www.wormbase.org/.
-
-
-
-
7
-
-
0034708586
-
Ideas fly at gene-finding jamboree
-
Pennisi, E. (2000) Ideas fly at gene-finding jamboree. Science, 287, 2182-2184.
-
(2000)
Science
, vol.287
, pp. 2182-2184
-
-
Pennisi, E.1
-
8
-
-
0035825662
-
Functional annotation of a full-length mouse cDNA collection
-
Kawai, J., Shinagawa, A., Shibata, K. et al. (2001) Functional annotation of a full-length mouse cDNA collection. Nature, 409, 685-690.
-
(2001)
Nature
, vol.409
, pp. 685-690
-
-
Kawai, J.1
Shinagawa, A.2
Shibata, K.3
-
9
-
-
0036225678
-
The genome of M. acetivorans reveals extensive metabolic and physiological diversity
-
DOI 10.1101/gr.223902
-
Galagan, J.E., Nusbaum, C., Roy, A. et al. (2002) The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Res., 12, 532-542. (Pubitemid 34308633)
-
(2002)
Genome Research
, vol.12
, Issue.4
, pp. 532-542
-
-
Galagan, J.E.1
Nusbaum, C.2
Roy, A.3
Endrizzi, M.G.4
Macdonald, P.5
Fitzhugh, W.6
Calvo, S.7
Engels, R.8
Smirnov, S.9
Atnoor, D.10
Brown, A.11
Allen, N.12
Naylor, J.13
Stange-Thomann, N.14
Dearellano, K.15
Johnson, R.16
Linton, L.17
McEwan, P.18
McKernan, K.19
Talamas, J.20
Tirrell, A.21
Ye, W.22
Zimmer, A.23
Barber, R.D.24
Cann, I.25
Graham, D.E.26
Grahame, D.A.27
Guss, A.M.28
Hedderich, R.29
Ingram-Smith, C.30
Craig Kuettner, H.31
Krzycki, J.A.32
Leigh, J.A.33
Li, W.34
Liu, J.35
Mukhopadhyay, B.36
Reeve, J.N.37
Smith, K.38
Springer, T.A.39
Umayam, L.A.40
White, O.41
White, R.H.42
De Macario, E.C.43
Ferry, J.G.44
Jarrell, K.F.45
Jing, H.46
Macario, A.J.L.47
Paulsen, I.48
Pritchett, M.49
Sowers, K.R.50
Swanson, R.V.51
Zinder, S.H.52
Lander, E.53
Metcalf, W.W.54
Birren, B.55
more..
-
10
-
-
33644876239
-
VMD: A community annotation database for oomycetes and microbial genomes
-
Tripathy, S., Pandey, V.N., Fang, B. et al. (2006) VMD: A community annotation database for oomycetes and microbial genomes. Nucleic Acids Res., 34, D379-D381.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Tripathy, S.1
Pandey, V.N.2
Fang, B.3
-
11
-
-
84875076697
-
-
Ensembl. http://www.ensembl.org.
-
-
-
-
12
-
-
84875082147
-
-
UCSC. http://genome.ucsc.edu/cgi-bin/hgGateway.
-
-
-
-
13
-
-
84875080720
-
-
MapViewer
-
NCBI MapViewer. http://www.ncbi.nlm.nih.gov/projects/mapview/.
-
-
-
-
14
-
-
50449088836
-
A wiki for the life sciences where authorship matters
-
Hoffmann, R. (2008) A wiki for the life sciences where authorship matters. Nat. Genet., 40, 1047-1051.
-
(2008)
Nat. Genet.
, vol.40
, pp. 1047-1051
-
-
Hoffmann, R.1
-
15
-
-
84875068700
-
-
Ensembl Genomes. http://www.ensemblgenomes.org/.
-
-
-
-
16
-
-
33748645500
-
GENCODE: Producing a reference annotation for ENCODE
-
Harrow, J., Denoeud, F., Frankish, A. et al. (2006) GENCODE: Producing a reference annotation for ENCODE. Genome Biol., 7 (Suppl. 1), S4 1-S4 9.
-
(2006)
Genome Biol.
, vol.7
, Issue.SUPPL. 1
-
-
Harrow, J.1
Denoeud, F.2
Frankish, A.3
-
17
-
-
2942547885
-
The distributed annotation system
-
Dowell, R.D., Jokerst, R.M., Day, A. et al. (2001) The distributed annotation system. BMC Bioinformatics, 2, 7.
-
(2001)
BMC Bioinformatics
, vol.2
, pp. 7
-
-
Dowell, R.D.1
Jokerst, R.M.2
Day, A.3
-
18
-
-
2442665184
-
The Otter annotation system
-
DOI 10.1101/gr.1864804
-
Searle, S.M., Gilbert, J., Iyer, V. et al. (2004) The otter annotation system. Genome Res, 14, 963-970. (Pubitemid 38660517)
-
(2004)
Genome Research
, vol.14
, Issue.5
, pp. 963-970
-
-
Searle, S.M.J.1
Gilbert, J.2
Iyer, V.3
Clamp, M.4
-
19
-
-
84875064047
-
-
MySQL. http://www.mysql.com/.
-
-
-
-
20
-
-
84875081856
-
-
KOMP. http://www.komp.org/.
-
-
-
-
21
-
-
84875078779
-
-
NorCOMM. http://www.norcomm.org/index.htm.
-
-
-
-
22
-
-
84875060369
-
-
IKMC
-
IKMC. http://www.knockoutmouse.org/.
-
-
-
-
23
-
-
84875057335
-
-
EUCOMM
-
EUCOMM. http://www.knockoutmouse.org/about/eucomm.
-
-
-
-
24
-
-
4944223388
-
Widespread predicted nonsense-mediated mRNA decay of alternatively- spliced transcripts of human normal and disease genes
-
DOI 10.1093/bioinformatics/btg1015
-
Green, R.E., Lewis, B.P., Hillman, R.T. et al. (2003) Widespread predicted nonsense-mediated mRNA decay of alternatively-spliced transcripts of human normal and disease genes. Bioinformatics, 19 (Suppl. 1), i118-i121. (Pubitemid 41185608)
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
-
-
Green, R.E.1
Lewis, B.P.2
Hillman, R.T.3
Blanchette, M.4
Lareau, L.F.5
Garnett, A.T.6
Rio, D.C.7
Brenner, S.E.8
-
25
-
-
79959210305
-
A conditional knockout resource for the genome-wide study of mouse gene function
-
Skarnes, W.C., Rosen, B., West, A.P. et al. (2011) A conditional knockout resource for the genome-wide study of mouse gene function. Nature, 474, 337-342.
-
(2011)
Nature
, vol.474
, pp. 337-342
-
-
Skarnes, W.C.1
Rosen, B.2
West, A.P.3
-
26
-
-
77951621301
-
The genome sequence of taurine cattle: A window to ruminant biology and evolution
-
Elsik, C.G., Tellam, R.L., Worley, K.C. et al. (2009) The genome sequence of taurine cattle: A window to ruminant biology and evolution. Science, 324, 522-528.
-
(2009)
Science
, vol.324
, pp. 522-528
-
-
Elsik, C.G.1
Tellam, R.L.2
Worley, K.C.3
-
27
-
-
77954676333
-
Pig genome sequence-analysis and publication strategy
-
Archibald, A.L., Bolund, L., Churcher, C. et al. (2010) Pig genome sequence-analysis and publication strategy. BMC Genomics, 11, 438.
-
(2010)
BMC Genomics
, vol.11
, pp. 438
-
-
Archibald, A.L.1
Bolund, L.2
Churcher, C.3
-
28
-
-
15944395145
-
Insights into host responses against pathogens from transcriptional profiling
-
DOI 10.1038/nrmicro1126
-
Jenner, R.G. and Young, R.A. (2005) Insights into host responses against pathogens from transcriptional profiling. Nat. Rev. Microbiol., 3, 281-294. (Pubitemid 40443722)
-
(2005)
Nature Reviews Microbiology
, vol.3
, Issue.4
, pp. 281-294
-
-
Jenner, R.G.1
Young, R.A.2
-
29
-
-
72849122933
-
From evolutionary genetics to human immunology: How selection shapes host defence genes
-
Barreiro, L.B. and Quintana-Murci, L. (2010) From evolutionary genetics to human immunology: How selection shapes host defence genes. Nat. Rev. Genet., 11, 17-30.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 17-30
-
-
Barreiro, L.B.1
Quintana-Murci, L.2
-
30
-
-
78651289449
-
Ensembl 2011
-
Flicek, P., Amode, M.R., Barrell, D. et al. (2011) Ensembl 2011. Nucleic Acids Res., 39, D800-D806.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
-
31
-
-
40049091292
-
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
-
DOI 10.1093/bioinformatics/btn013
-
Stanke, M., Diekhans, M., Baertsch, R. et al. (2008) Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics, 24, 637-644. (Pubitemid 351321206)
-
(2008)
Bioinformatics
, vol.24
, Issue.5
, pp. 637-644
-
-
Stanke, M.1
Diekhans, M.2
Baertsch, R.3
Haussler, D.4
-
32
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
DOI 10.1006/jmbi.1997.0951
-
Burge, C. and Karlin, S. (1997) Prediction of complete gene structures in human genomic DNA. J. Mol. Biol., 268, 78-94. (Pubitemid 27192680)
-
(1997)
Journal of Molecular Biology
, vol.268
, Issue.1
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
33
-
-
38549148703
-
The vertebrate genome annotation (Vega) database
-
DOI 10.1093/nar/gkm987
-
Wilming, L.G., Gilbert, J.G., Howe, K. et al. (2008) The vertebrate genome annotation (Vega) database. Nucleic Acids Res., 36, D753-D760. (Pubitemid 351149819)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Wilming, L.G.1
Gilbert, J.G.R.2
Howe, K.3
Trevanion, S.4
Hubbard, T.5
Harrow, J.L.6
-
34
-
-
0037422575
-
Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
-
DOI 10.1073/pnas.0136770100
-
Lewis, B.P., Green, R.E. and Brenner, S.E. (2003) Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc. Natl Acad. Sci. USA, 100, 189-192. (Pubitemid 36078050)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.1
, pp. 189-192
-
-
Lewis, B.P.1
Green, R.E.2
Brenner, S.E.3
-
36
-
-
78651320425
-
Genenames.org: The HGNC resources in 2011
-
Seal, R.L., Gordon, S.M., Lush, M.J. et al. (2011) genenames.org: The HGNC resources in 2011. Nucleic Acids Res, 39, D514-D519.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Seal, R.L.1
Gordon, S.M.2
Lush, M.J.3
-
37
-
-
84875056708
-
-
HGNC
-
HGNC. http://www.genenames.org/.
-
-
-
-
38
-
-
78651321210
-
Bovine Genome Database: Integrated tools for genome annotation and discovery
-
Childers, C.P., Reese, J.T., Sundaram, J.P. et al. (2011) Bovine Genome Database: Integrated tools for genome annotation and discovery. Nucleic Acids Res., 39, D830-D834.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Childers, C.P.1
Reese, J.T.2
Sundaram, J.P.3
-
39
-
-
33750504034
-
Community annotation: Procedures, protocols, and supporting tools
-
DOI 10.1101/gr.5580606
-
Elsik, C.G., Worley, K.C., Zhang, L. et al. (2006) Community annotation: Procedures, protocols, and supporting tools. Genome Res., 16, 1329-1333. (Pubitemid 44664674)
-
(2006)
Genome Research
, vol.16
, Issue.11
, pp. 1329-1333
-
-
Elsik, C.G.1
Worley, K.C.2
Zhang, L.3
Milshina, N.V.4
Jiang, H.5
Reese, J.T.6
Childs, K.L.7
Venkatraman, A.8
Dickens, C.M.9
Weinstock, G.M.10
Gibbs, R.A.11
-
40
-
-
0002636459
-
Annotation of the Drosophila melanogaster euchromatic genome: A systematic review
-
Misra, S., Crosby, M.A., Mungall, C.J. et al. (2002) Annotation of the Drosophila melanogaster euchromatic genome: A systematic review. Genome Biol., 3, RESEARCH0083.
-
(2002)
Genome Biol.
, vol.3
-
-
Misra, S.1
Crosby, M.A.2
Mungall, C.J.3
-
41
-
-
33846857991
-
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana: The Rice Annotation Project
-
DOI 10.1101/gr.5509507
-
Itoh, T., Tanaka, T., Barrero, R.A., et al. (2007) Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res., 17, 175-183. (Pubitemid 46220762)
-
(2007)
Genome Research
, vol.17
, Issue.2
, pp. 175-183
-
-
Itoh, T.1
Tanaka, T.2
Barrero, R.A.3
Yamasaki, C.4
Fujii, Y.5
Hilton, P.B.6
Antonio, B.A.7
Aono, H.8
Apweiler, R.9
Bruskiewich, R.10
Bureau, T.11
Burr, F.12
De Oliveira, A.C.13
Fuks, G.14
Habara, T.15
Haberer, G.16
Han, B.17
Harada, E.18
Hiraki, A.T.19
Hirochika, H.20
Hoen, D.21
Hokari, H.22
Hosokawa, S.23
Hsing, Y.-I.24
Ikawa, H.25
Ikeo, K.26
Imanishi, T.27
Ito, Y.28
Jaiswal, P.29
Kanno, M.30
Kawahara, Y.31
Kawamura, T.32
Kawashima, H.33
Khurana, J.P.34
Kikuchi, S.35
Komatsu, S.36
Koyanagi, K.O.37
Kubooka, H.38
Lieberherr, D.39
Lin, Y.-C.40
Lonsdale, D.41
Matsumoto, T.42
Matsuya, A.43
McCombie, W.R.44
Messing, J.45
Miyao, A.46
Mulder, N.47
Nagamura, Y.48
Nam, J.49
Namiki, N.50
Numa, H.51
Nurimoto, S.52
O'Donovan, C.53
Ohyanagi, H.54
Okido, T.55
Oota, S.56
Osato, N.57
Palmer, L.E.58
Quetier, F.59
Raghuvanshi, S.60
Saichi, N.61
Sakai, H.62
Sakai, Y.63
Sakata, K.64
Sakurai, T.65
Sato, F.66
Sato, Y.67
Schoof, H.68
Seki, M.69
Shibata, M.70
Shimizu, Y.71
Shinozaki, K.72
Shinso, Y.73
Singh, N.K.74
Smith-White, B.75
Takeda, J.-I.76
Tanino, M.77
Tatusova, T.78
Thongjuea, S.79
Todokoro, F.80
Tsugane, M.81
Tyagi, A.K.82
Vanavichit, A.83
Wang, A.84
Wing, R.A.85
Yamaguchi, K.86
Yamamoto, M.87
Yamamoto, N.88
Yu, Y.89
Zhang, H.90
Zhao, Q.91
Higo, K.92
Burr, B.93
Gojobori, T.94
Sasaki, T.95
more..
|