Dual channel sensitive detection of hsa-miR-21 based on rolling circle amplification and quantum dots tagging

Journal of Biomedical Nanotechnology

Volumn 10, Issue 4, 2014, Pages 615-621

  Wang, Dan Chen ^a   Hu, Li Hui ^a   Zhou, Yu Hui ^a   Huang, Yu Ting ^a   Li, Xinhua ^a   Zhu, Jun Jie ^a  

^a NANJING UNIVERSITY   (China)

Author keywords

Anodic stripping voltammetric; Fluorescent detection; miRNA; Quantum dots; Rolling circle amplification

Indexed keywords

ANODIC STRIPPING VOLTAMMETRIC; ANODIC STRIPPING VOLTAMMETRY; DETECTION METHODS; FLUORESCENT DETECTION; FLUORESCENT METHODS; MIRNA; ROLLING CIRCLE AMPLIFICATIONS; SENSITIVE DETECTION;

AMPLIFICATION; FLUORESCENCE; SEMICONDUCTOR QUANTUM DOTS; VOLTAMMETRY;

RNA;

CADMIUM; MICRORNA 21; OLIGONUCLEOTIDE; QUANTUM DOT;

ANODIC STRIPPING POTENTIOMETRY; ARTICLE; FLUORESCENCE ANALYSIS; NUCLEIC ACID AMPLIFICATION; NUCLEIC ACID ANALYSIS; QUANTUM DOTS TAGGING; ROLLING CIRCLE AMPLIFICATION;

BIOSENSING TECHNIQUES; CONDUCTOMETRY; EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; MICRORNAS; NUCLEIC ACID AMPLIFICATION TECHNIQUES; QUANTUM DOTS; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SPECTROMETRY, FLUORESCENCE;

EID: 84896800561     PISSN: 15507033     EISSN: 15507041     Source Type: Journal    
DOI: 10.1166/jbn.2014.1742     Document Type: Article

References (35)

1. K. K. H. Farh, A. Grimson, C. Jan, B. P. Lewis, W. K. Johnston, L. P. Lim, C. B. Burge, and D. P. Bartel, The widespread impact of mammalian MicroRNAs on mRNA repression and evolution. Science 310, 1817 (2005).
2. M. Castoldi, S. Schmidt, V. Benes, M. W. Hentze, and M. U. Muckenthaler, miChip: An array-based method for microRNA expression profiling using locked nucleic acid capture probes. Nat. Protoc. 3, 321 (2008).
3. S. Zhu, H. Wu, F. Wu, D. Nie, S. Sheng, and Y. Y. Mo, MicroRNA- 21 targets tumor suppressor genes in invasion and metastasis. Cell. Res. 18, 350 (2008).
4. M. Lagos-Quintana, R. Rauhut, W. Lendeckel, and T. Tuschl, Identification of novel genes coding for small expressed RNAs. Sci. Signal 294, 853 (2001).
5. J. M. Cummins, Y. He, R. J. Leary, R. Pagliarini, L. A. Diaz, T. Sjoblom, O. Barad, Z. Bentwich, A. E. Szafranska, and E. Labourier, The colorectal microRNAome. P. Natl. Acad. Sci. USA 103, 3687 (2006).
6. É. Várallyay, J. Burgyán, and Z. Havelda, MicroRNA detection by northern blotting using locked nucleic acid probes. Nat. Protoc. 3, 190 (2008).
7. J. M. Thomson, J. Parker, C. M. Perou, and S. M. Hammond, A custom microarray platform for analysis of microRNA gene expression. Nat. Methods 1, 47 (2004).
8. C. G. Liu, G. A. Calin, B. Meloon, N. Gamliel, C. Sevignani, M. Ferracin, C. D. Dumitru, M. Shimizu, S. Zupo, and M. Dono, An oligonucleotide microchip for genome-wide microRNA profiling in human and mouse tissues. P. Natl. Acad. Sci. USA 101, 9740 (2004).
9. R. Q. Liang, W. Li, Y. Li, C. Y. Tan, J. X. Li, Y. X. Jin, and K. C. Ruan, An oligonucleotide microarray for microRNA expression analysis based on labeling RNA with quantum dot and nanogold probe. Nucleic Acids Res. 33, 17 (2005).
10. C. Chen, D. A. Ridzon, A. J. Broomer, Z. Zhou, D. H. Lee, J. T. Nguyen, M. Barbisin, N. L. Xu, V. R. Mahuvakar, and M. R. Andersen, Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res. 33, 179 (2005).
11. C. K. Raymond, B. S. Roberts, P. Garrett-Engele, L. P. Lim, and J. M. Johnson, Simple, quantitative primer-extension PCR assay for direct monitoring of microRNAs and short-interfering RNAs. RNA 11, 1737 (2005).
12. J. Yan, Z. Li, C. Liu, and Y. Cheng, Simple and sensitive detection of microRNAs with ligase chain reaction. Chem. Commun. 46, 2432 (2010).
13. C. Li, Z. Li, H. Jia, and J. Yan, One-step ultrasensitive detection of microRNAs with loop-mediated isothermal amplification (LAMP). Chem. Commun. 47, 2595 (2011).
14. M. Wanunu, T. Dadosh, V. Ray, J. Jin, L. McReynolds, and M. Drndic, Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors. Nat. Nanotechnol. 5, 807 (2010).
15. L. Gao, J. Cui, Y. Zhou, L. Chen, C. Zhang, K. Chen, C. Lian, L. Li, H. Li, and J. Liang, A strategy for sequencing based on rollingcircle amplification on a microarray. J. Biomed. Nanotechnol. 9, 615 (2013).
16. H. Zhao, X. Ma, M. Li, D. Zhou, P. Xiao, and Z. Lu, Analysis of CpG island methylation using rolling circle amplification (RCA) product microarray. J. Biomed. Nanotechnol. 7, 292 (2011).
17. J. Yan, S. Song, B. Li, Q. Zhang, Q. Huang, H. Zhang, and C. Fan, An on-nanoparticle rolling-circle amplification platform for ultrasensitive protein detection in biological fluids. Small 6, 2520 (2010).
18. K. Sato, A. Tachihara, B. Renberg, K. Mawatari, K. Sato, Y. Tanaka, J. Jarvius, M. Nilsson, and T. Kitamori, Microbead-based rolling circle amplification in a microchip for sensitive DNA detection. Lab. Chip 10, 1262 (2010).
19. H. Takahashi, A. Matsumoto, S. Sugiyama, and T. Kobori, Direct detection of green fluorescent protein messenger RNA expressed in Escherichia coli by rolling circle amplification. Anal. Biochem. 401, 242 (2010)
20. H. Zheng, G. Chen, L. A. DeLouise, and Z. Lou, Detection of the cancer marker CD146 expression in melanoma cells with semi-conductor quantum dot label. J. Biomed. Nanotechnol. 6, 303 (2010).
21. X. Zhang, D. Li, C. Wang, X. Zhi, C. Zhang, K. Wang, and D. Cui, A CCD-based reader combined quantum dots-labeled lateral flow strips for ultrasensitive quantitative detection of anti-HBs antibody. J. Biomed. Nanotechnol. 8, 372 (2012).
22. L. Zhao, J. T. Cao, Z. Q. Wu, J. X. Li, and J. J. Zhu, Lab-on-achip for anticancer drug screening using quantum dots probe based apoptosis assay. J. Biomed. Nanotechnol. 9, 348 (2013).
23. A. M. Smith, H. Duan, A. M. Mohs, and S. Nie, Bioconjugated quantum dots for in vivo molecular and cellular imaging. Adv. Drug Deliver Res. 60, 1226 (2008).
24. W. Cheng, F. Yan, L. Ding, H. X. Ju, and Y. B. Yin, Cascade signal amplification strategy for subattomolar protein detection by rolling circle amplification and quantum dots tagging. Anal. Chem. 82, 3337 (2010).
25. Z. H. Su, Y. Liu, Y. Zhang, Q. J. Xie, L. Chen, Y. Huang, Y. C. Fu, Y. Meng, X. J. Li, M. Ma, and S. Z. Yao, Thiol-ene chemistry guided preparation of thiolated polymeric nanocomposite for anodic stripping voltammetric analysis of Cd2+ and Pb2+. Analyst 138, 1180 (2013).
26. C. Babyak and R. B. Smart, Electrochemical detection of trace concentrations of cadmium and lead with a boron-doped diamond electrode: Effect of KCl and KNO3 electrolytes, interferences and measurement in river water. Electronanl. 16, 175 (2004).
27. J. Li, T. Zhang, J. Ge, Y. Yin, and W. Zhong, Fluorescence signal amplification by cation exchange in ionic nanocrystals. Angew. Chem. In. Edit. 48, 1588 (2009).
28. J. Kao, A. T. Harootunian, and R. Y. Tsien, Photochemically generated cytosolic calcium pulses and their detection by fluo-3. J. Biol. Chem. 264, 8179 (1989).
29. A. Minta, J. Kao, and R. Y. Tsien, Fluorescent indicators for cytosolic calcium based on rhodamine and fluorescein chromophores. J. Biol. Chem. 264, 8171 (1989).
30. M. Soibinet, V. Souchon, I. Leray, and B. Valeur, Rhod-5N as a fluorescent molecular sensor of cadmium (II) ion. J. Fluoresc. 18, 1077 (2008).
31. G. X. Liang, L. L. Li, H. Y. Liu, J. R. Zhang, C. Burda, and J. J. Zhu, Fabrication of near-infrared-emitting CdSeTe/ZnS core/shell quantum dots and their electrogenerated chemiluminescence. Chem. Commun. 46, 2974 (2010).
32. Y. He, H. T. Lu, L. M. Sai, Y. Y. Su, M. Hu, C. H. Fan, W. Huang, and L. H. Wang, Microwave synthesis of water-dispersed CdTe/CdS/ZnS core-shell-shell quantum dots with excellent photostability and biocompatibility. Adv. Mater. 20, 3416 (2008).
33. L. L. Li, Y. Chen, Q. Lu, J. Ji, Y. Shen, M. Xu, R. Fei, G. Yang, K. Zhang, and J. R. Zhang, Electrochemiluminescence energy transfer-promoted ultrasensitive immunoassay using near-infrarede-mitting CdSeTe/CdS/ZnS quantum dots and gold nanorods. Scientific Reports 3, 1529 (2013).
34. D. C. Wang, L. H. Hu, H. M. Zhou, E. S. Abdel, and J. J. Zhu, Molecular beacon structure mediated rolling circle amplification for ultrasensitive electrochemical detection of microRNA based on quantum dots tagging. Electrochem. Commun. 33, 80 (2013).
35. R. Aqeilan, G. Calin, and C. Croce, miR-15a and miR-16-1 in cancer: Discovery, function and future perspectives. Cell Death Differ. 17, 215 (2009).