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Volumn 3, Issue 2, 2008, Pages 321-329

miChip: An array-based method for microRNA expression profiling using locked nucleic acid capture probes

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; LOCKED NUCLEIC ACID; MICRORNA;

EID: 39449096929     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2008.4     Document Type: Article
Times cited : (123)

References (28)
  • 1
    • 13944282215 scopus 로고    scopus 로고
    • Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
    • Lim, L.P. et al. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433, 769-773 (2005).
    • (2005) Nature , vol.433 , pp. 769-773
    • Lim, L.P.1
  • 2
    • 29144505309 scopus 로고    scopus 로고
    • The widespread impact of mammalian MicroRNAs on mRNA repression and evolution
    • Farh, K.K. et al. The widespread impact of mammalian MicroRNAs on mRNA repression and evolution. Science 310, 1817-1821 (2005).
    • (2005) Science , vol.310 , pp. 1817-1821
    • Farh, K.K.1
  • 3
    • 33751348560 scopus 로고    scopus 로고
    • Detecting of the argonaute protein Ago2 and microRNAs in the RNA induced silencing complex (RISC) using a monoclonal antibody
    • Ikeda, K. et al. Detecting of the argonaute protein Ago2 and microRNAs in the RNA induced silencing complex (RISC) using a monoclonal antibody. J. Immunol. Methods 317, 38-44 (2006).
    • (2006) J. Immunol. Methods , vol.317 , pp. 38-44
    • Ikeda, K.1
  • 4
    • 27744537851 scopus 로고    scopus 로고
    • Human RISC couples microRNA biogenesis and posttranscriptional gene silencing
    • Gregory, R.I., Chendrimada, T.P., Cooch, N. & Shiekhattar, R. Human RISC couples microRNA biogenesis and posttranscriptional gene silencing. Cell 123, 631-640 (2005).
    • (2005) Cell , vol.123 , pp. 631-640
    • Gregory, R.I.1    Chendrimada, T.P.2    Cooch, N.3    Shiekhattar, R.4
  • 5
    • 0346727524 scopus 로고    scopus 로고
    • MicroRNAs modulate hematopoietic lineage differentiation
    • Chen, C.Z., Li, L., Lodish, H.F. & Bartel, D.P. MicroRNAs modulate hematopoietic lineage differentiation. Science 303, 83-86 (2004).
    • (2004) Science , vol.303 , pp. 83-86
    • Chen, C.Z.1    Li, L.2    Lodish, H.F.3    Bartel, D.P.4
  • 6
    • 33644779735 scopus 로고    scopus 로고
    • The microRNA miR-181 targets the homeobox protein Hox-A11 during mammalian myoblast differentiation
    • Naguibneva, I. et al. The microRNA miR-181 targets the homeobox protein Hox-A11 during mammalian myoblast differentiation. Nat. Cell Biol. 8, 278-284 (2006).
    • (2006) Nat. Cell Biol , vol.8 , pp. 278-284
    • Naguibneva, I.1
  • 7
    • 33747159113 scopus 로고    scopus 로고
    • The Hippo pathway regulates the bantam microRNA to control cell proliferation and apoptosis in Drosophila
    • Thompson, B.J. & Cohen, S.M. The Hippo pathway regulates the bantam microRNA to control cell proliferation and apoptosis in Drosophila. Cell 126, 767-774 (2006).
    • (2006) Cell , vol.126 , pp. 767-774
    • Thompson, B.J.1    Cohen, S.M.2
  • 8
    • 25444520537 scopus 로고    scopus 로고
    • miR-15 and miR-16 induce apoptosis by targeting BCL2
    • Cimmino, A. et al. miR-15 and miR-16 induce apoptosis by targeting BCL2. Proc, Natl. Acad Sci. USA 102, 13944-13949 (2005).
    • (2005) Proc, Natl. Acad Sci. USA , vol.102 , pp. 13944-13949
    • Cimmino, A.1
  • 9
    • 24644483623 scopus 로고    scopus 로고
    • Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA
    • Jopling, C.L., Yi M., Lancaster, A.M., Lemon, S.M. & Sarnow, P. Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA. Science 309, 1577-1581 (2005).
    • (2005) Science , vol.309 , pp. 1577-1581
    • Jopling, C.L.1    Yi, M.2    Lancaster, A.M.3    Lemon, S.M.4    Sarnow, P.5
  • 10
    • 17244375710 scopus 로고    scopus 로고
    • Kaposi's sarcoma-associated herpesvirus expresses an array of viral microRNAs in latently infected cells
    • Cai, X. et al. Kaposi's sarcoma-associated herpesvirus expresses an array of viral microRNAs in latently infected cells. Proc. Natl. Acad. Sci. USA 102, 5570-5575 (2005).
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 5570-5575
    • Cai, X.1
  • 11
    • 20844463414 scopus 로고    scopus 로고
    • Identification of microRNAs ofthe herpesvirus family
    • Pfeffer, S. et al. Identification of microRNAs ofthe herpesvirus family. Nat. Methods 2, 269-276 (2005).
    • (2005) Nat. Methods , vol.2 , pp. 269-276
    • Pfeffer, S.1
  • 12
    • 33747628074 scopus 로고    scopus 로고
    • Identification by real-time PCR of 13 mature microRNAs differentially expressed in colorectal cancer and non-tumoral tissues
    • Bandres, E. et al. Identification by real-time PCR of 13 mature microRNAs differentially expressed in colorectal cancer and non-tumoral tissues. Mol. Cancer 5, 29 (2006).
    • (2006) Mol. Cancer , vol.5 , pp. 29
    • Bandres, E.1
  • 13
    • 33845608588 scopus 로고    scopus 로고
    • Identification of differentially expressed microRNAs by microarray: A possible role for microRNA genes in pituitary adenomas
    • Bottoni, A. et al. Identification of differentially expressed microRNAs by microarray: A possible role for microRNA genes in pituitary adenomas. J. Cell Physiol. 210, 370-377 (2007).
    • (2007) J. Cell Physiol , vol.210 , pp. 370-377
    • Bottoni, A.1
  • 14
    • 30044436911 scopus 로고    scopus 로고
    • The role of microRNA genes in papillary thyroid carcinoma
    • He, H. et al. The role of microRNA genes in papillary thyroid carcinoma. Proc, Natl. Acad. Sci. USA 102, 19075-19080 (2005).
    • (2005) Proc, Natl. Acad. Sci. USA , vol.102 , pp. 19075-19080
    • He, H.1
  • 15
    • 33750376591 scopus 로고    scopus 로고
    • Mir-17-5p regulates breast cancer cell proliferation by inhibiting translation of AIBI mRNA
    • Hossain, A., Kuo, M.T. & Saunders, G.F. Mir-17-5p regulates breast cancer cell proliferation by inhibiting translation of AIBI mRNA. Mol. Cell Biol 26, 8191-8201 (2006).
    • (2006) Mol. Cell Biol , vol.26 , pp. 8191-8201
    • Hossain, A.1    Kuo, M.T.2    Saunders, G.F.3
  • 16
    • 34248398096 scopus 로고    scopus 로고
    • Expression of the miR-17-92 polycistron in chronic myeloid Leukemia (CML) CD34+ cells
    • Venturihi, L. et al. Expression of the miR-17-92 polycistron in chronic myeloid Leukemia (CML) CD34+ cells. Blood 109, 4399-4405 (2007).
    • (2007) Blood , vol.109 , pp. 4399-4405
    • Venturihi, L.1
  • 17
    • 34247648712 scopus 로고    scopus 로고
    • MicroRNA miR-181a correlates with morphological sub-class of acute myeloid Leukaemia and the expression of its target genes in global genome-wide analysis
    • Debernardi, S. et al. MicroRNA miR-181a correlates with morphological sub-class of acute myeloid Leukaemia and the expression of its target genes in global genome-wide analysis. Leukemia 21 912-916 (2007).
    • (2007) Leukemia , vol.21 , pp. 912-916
    • Debernardi, S.1
  • 18
    • 39449094132 scopus 로고    scopus 로고
    • Cloning and detecting signature MicroRNAs from mammalian cells
    • Sun, G., Li, H. & Rossi, J.J. Cloning and detecting signature MicroRNAs from mammalian cells. Methods Enzymol. 427, 123-138 (2007).
    • (2007) Methods Enzymol , vol.427 , pp. 123-138
    • Sun, G.1    Li, H.2    Rossi, J.J.3
  • 19
    • 33749059160 scopus 로고    scopus 로고
    • The microRNA sequence database
    • Griffiths-Jones, S. miRBase: The microRNA sequence database. Methods Mol. Biol. 342, 129-138 (2006).
    • (2006) Methods Mol. Biol , vol.342 , pp. 129-138
    • Jones, G.1    miRBase, S.2
  • 20
    • 2342642197 scopus 로고    scopus 로고
    • A high-throughput method to monitor the expression of microRNA precursors
    • Schmittgen, T.D., Jiang, J., Liu, Q. & Yang, L. A high-throughput method to monitor the expression of microRNA precursors. Nucleic Acids Res. 32, e43 (2004).
    • (2004) Nucleic Acids Res , vol.32
    • Schmittgen, T.D.1    Jiang, J.2    Liu, Q.3    Yang, L.4
  • 21
    • 30844459069 scopus 로고    scopus 로고
    • Rational probe optimization and enhanced detection strategy for microRNAs using microarrays
    • Goff, L.A. et al. Rational probe optimization and enhanced detection strategy for microRNAs using microarrays. RNA Biol. 2 93-100 (2005).
    • (2005) RNA Biol , vol.2 , pp. 93-100
    • Goff, L.A.1
  • 22
    • 33646178285 scopus 로고    scopus 로고
    • A sensitive array for microRNA expression profiling (miChip) based on locked nucleic acids (LNA)
    • Castoldi, M. et al. A sensitive array for microRNA expression profiling (miChip) based on locked nucleic acids (LNA). RNA 12 913-920 (2006).
    • (2006) RNA , vol.12 , pp. 913-920
    • Castoldi, M.1
  • 23
    • 34548668636 scopus 로고    scopus 로고
    • Castoldi, M., Benes, V., Hentze, M.W. & Muckenthaler, M.U. miChip: A microarray platform for expression profiling of microRNAs based on locked nucleic acid (LNA) oligonucleotide capture probes. Methods 43, 146-152 (2007).
    • Castoldi, M., Benes, V., Hentze, M.W. & Muckenthaler, M.U. miChip: A microarray platform for expression profiling of microRNAs based on locked nucleic acid (LNA) oligonucleotide capture probes. Methods 43, 146-152 (2007).
  • 24
    • 6344277190 scopus 로고    scopus 로고
    • LNA (locked nucleic acid): High-affinity targeting of complementary RNA and DNA
    • Vester, B. & Wengel, J. LNA (locked nucleic acid): High-affinity targeting of complementary RNA and DNA. Biochemistry 43, 13233-13241 (2004).
    • (2004) Biochemistry , vol.43 , pp. 13233-13241
    • Vester, B.1    Wengel, J.2
  • 25
    • 16544365954 scopus 로고    scopus 로고
    • Sensitive and specific detection of microRNAs by northern biot analysis using LNA-modified oligonucleotide probes
    • Valoczi, A. et al. Sensitive and specific detection of microRNAs by northern biot analysis using LNA-modified oligonucleotide probes. Nucleic Acis Res. 32, e175 (2004).
    • (2004) Nucleic Acis Res , vol.32
    • Valoczi, A.1
  • 26
    • 5344273958 scopus 로고    scopus 로고
    • Microarray analysis of microRNA expression in the developing mammalian brain
    • Miska, E. A. et al. Microarray analysis of microRNA expression in the developing mammalian brain. Genome Biol. 5, R68 (2004).
    • (2004) Genome Biol , vol.5
    • Miska, E.A.1
  • 27
    • 0041336612 scopus 로고    scopus 로고
    • Effects of atmospheric ozone on microarray data quality
    • Fare, T.L. et al. Effects of atmospheric ozone on microarray data quality. Anal Chem. 75, 4672-4675 (2003).
    • (2003) Anal Chem , vol.75 , pp. 4672-4675
    • Fare, T.L.1
  • 28
    • 23844523406 scopus 로고    scopus 로고
    • miR-122, a mammalian liver-specific microRNA, is processed from her mRNA and may downregulate the high affinity cationic, amino acid transporter CAT-1
    • Chang, J. et al. miR-122, a mammalian liver-specific microRNA, is processed from her mRNA and may downregulate the high affinity cationic, amino acid transporter CAT-1. RNA Biol. 1, 106-113 (2004).
    • (2004) RNA Biol , vol.1 , pp. 106-113
    • Chang, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.