메뉴 건너뛰기




Volumn 8, Issue 11, 2013, Pages

Demonstration of genome-wide association studies for identifying markers for wood property and male strobili traits in Cryptomeria japonica

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONIFER; CONSANGUINITY; CONTROLLED STUDY; GENE LINKAGE DISEQUILIBRIUM; GENE SEQUENCE; GENETIC ASSOCIATION; GENETIC SIMILARITY; GENOTYPE; HETEROZYGOSITY; HOMOZYGOSITY; JAPAN; JAPANESE CEDAR; MALE; NONHUMAN; PHENOTYPE; POPULATION ABUNDANCE; POPULATION STRUCTURE; QUANTITATIVE TRAIT LOCUS; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL MODEL; WOOD;

EID: 84896738854     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0079866     Document Type: Article
Times cited : (42)

References (114)
  • 2
    • 0001659812 scopus 로고
    • Limitations of molecular-marker-aided selection in forest tree breeding
    • Strauss SH, Lande R, Namkoong G (1992) Limitations of molecular-marker-aided selection in forest tree breeding. Can J For Res 22: 1050-1061.
    • (1992) Can J for Res , vol.22 , pp. 1050-1061
    • Strauss, S.H.1    Lande, R.2    Namkoong, G.3
  • 3
    • 25844508364 scopus 로고    scopus 로고
    • Haplotype diversity: The link between statistical and biological association
    • DOI 10.1016/j.tplants.2005.08.007, PII S1360138505002049
    • Buntjer JB, Sørensen AP, Peleman JD (2005) Haplotype diversity: the link between statistical and biological association. Trends Plant Sci 10: 466-471. (Pubitemid 41395267)
    • (2005) Trends in Plant Science , vol.10 , Issue.10 , pp. 466-471
    • Buntjer, J.B.1    Sorensen, A.P.2    Peleman, J.D.3
  • 4
    • 77953233453 scopus 로고    scopus 로고
    • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
    • Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, et al. (2010) Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 465: 627-631.
    • (2010) Nature , vol.465 , pp. 627-631
    • Atwell, S.1    Huang, Y.S.2    Vilhjálmsson, B.J.3    Willems, G.4    Horton, M.5
  • 5
    • 13144306071 scopus 로고    scopus 로고
    • Genome-wide association studies for common diseases and complex traits
    • DOI 10.1038/nrg1521
    • Hirschhorn JN, Daly MJ (2005) Genome-wide association studies for common diseases and complex traits. Nat Rev Genet 6: 95-108. (Pubitemid 40179532)
    • (2005) Nature Reviews Genetics , vol.6 , Issue.2 , pp. 95-108
    • Hirschhorn, J.N.1    Daly, M.J.2
  • 6
    • 78049332150 scopus 로고    scopus 로고
    • Genome-wide association studies of 14 agronomic traits in rice landraces
    • Huang X, Wei X, Sang T, Zhao Q, Feng Q, et al. (2011) Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet 42: 961-967.
    • (2011) Nat Genet , vol.42 , pp. 961-967
    • Huang, X.1    Wei, X.2    Sang, T.3    Zhao, Q.4    Feng, Q.5
  • 7
    • 3042745450 scopus 로고    scopus 로고
    • Association genetics of complex traits in conifers
    • DOI 10.1016/j.tplants.2004.05.006, PII S1360138504001335
    • Neale DB, Savolainen O (2004) Association genetics of complex traits in conifers. Trends Plant Sci 9: 325-330. (Pubitemid 38871431)
    • (2004) Trends in Plant Science , vol.9 , Issue.7 , pp. 325-330
    • Neale, D.B.1    Savolainen, O.2
  • 9
    • 33846502009 scopus 로고    scopus 로고
    • Association genetics in Pinus taeda L. I. wood property traits
    • DOI 10.1534/genetics.106.061127
    • González-Martínez SC, Wheeler NC, Ersoz E, Nelson CD, Neale DB (2007) Association genetics in Pinus taeda L. I. Wood property traits. Genetics 175: 399-409. (Pubitemid 46168581)
    • (2007) Genetics , vol.175 , Issue.1 , pp. 399-409
    • Gonzalez-Martinez, S.C.1    Wheeler, N.C.2    Ersoz, E.3    Nelson, C.D.4    Neale, D.B.5
  • 10
    • 45549083501 scopus 로고    scopus 로고
    • Association genetics in Pinus taeda L. II. Carbon isotope discrimination
    • DOI 10.1038/hdy.2008.21, PII HDY200821
    • González-Martínez SC, Huber D, Ersoz E, Davis JM, Neale DB (2008) Association genetics in Pinus taeda L. II. Carbon isotope discrimination. Heredity 101: 19-26. (Pubitemid 351861514)
    • (2008) Heredity , vol.101 , Issue.1 , pp. 19-26
    • Gonzalez-Martinez, S.C.1    Huber, D.2    Ersoz, E.3    Davis, J.M.4    Neale, D.B.5
  • 11
    • 79960697235 scopus 로고    scopus 로고
    • Association genetics of carbon isotope discrimination, height and foliar nitrogen in a natural population of Pinus taeda L
    • Cumbie WP, Eckert A, Wegrzyn J, Whetten R, Neale D, et al. (2011) Association genetics of carbon isotope discrimination, height and foliar nitrogen in a natural population of Pinus taeda L. Heredity 107: 105-114.
    • (2011) Heredity , vol.107 , pp. 105-114
    • Cumbie, W.P.1    Eckert, A.2    Wegrzyn, J.3    Whetten, R.4    Neale, D.5
  • 12
    • 79955930975 scopus 로고    scopus 로고
    • Association genetics of wood physical traits in the conifer white spruce and relationships with gene expression
    • Beaulieu J, Doerksen T, Boyle B, Clément S, Deslauriers M, et al. (2011) Association genetics of wood physical traits in the conifer white spruce and relationships with gene expression. Genetics 188: 197-214.
    • (2011) Genetics , vol.188 , pp. 197-214
    • Beaulieu, J.1    Doerksen, T.2    Boyle, B.3    Clément, S.4    Deslauriers, M.5
  • 13
    • 84862009871 scopus 로고    scopus 로고
    • Genome-wide association genetics of an adaptive trait in lodgepole pine
    • Parchman TL, Gompert Z, Mudge J, Schilkey FD, Benkman CW, et al. (2012) Genome-wide association genetics of an adaptive trait in lodgepole pine. Mol Ecol 21: 2991-3005.
    • (2012) Mol Ecol , vol.21 , pp. 2991-3005
    • Parchman, T.L.1    Gompert, Z.2    Mudge, J.3    Schilkey, F.D.4    Benkman, C.W.5
  • 14
    • 17044419163 scopus 로고    scopus 로고
    • Genetic association studies of complex traits: Design and analysis issues
    • Newton-Cheh C, Hirschhorn JN (2005) Genetic association studies of complex traits: design and analysis issues. Mutat Res 573: 54.
    • (2005) Mutat Res , vol.573 , pp. 54
    • Newton-Cheh, C.1    Hirschhorn, J.N.2
  • 17
    • 33846466407 scopus 로고    scopus 로고
    • An Arabidopsis example of association mapping in structured samples
    • Zhao K, Aranzana MJ, Kim S, Lister C, Shindo C, et al. (2007) An Arabidopsis example of association mapping in structured samples. PLoS Genet 3: e4.
    • (2007) PLoS Genet , vol.3
    • Zhao, K.1    Aranzana, M.J.2    Kim, S.3    Lister, C.4    Shindo, C.5
  • 18
    • 33847310825 scopus 로고    scopus 로고
    • Genomic diversity in forest trees
    • DOI 10.1016/j.pbi.2007.01.011, PII S1369526607000155, Genome Studies and Molecular Genetics
    • Savolainen O, Pyhajarvi T (2007) Genomic diversity in forest trees. Curr Opin Plant Biol 10: 162-167. (Pubitemid 46330113)
    • (2007) Current Opinion in Plant Biology , vol.10 , Issue.2 , pp. 162-167
    • Savolainen, O.1    Pyhajarvi, T.2
  • 22
    • 0042426319 scopus 로고
    • Geographical differentiation of natural Cryptomeria stands analyzed by diterpene hydrocarbon constituents of individual trees
    • Yasue M, Ogiyama K, Suto S, Tsukahara H, Miyahara F, et al. (1987) Geographical differentiation of natural Cryptomeria stands analyzed by diterpene hydrocarbon constituents of individual trees. J Jpn For Soc 69: 152-156.
    • (1987) J Jpn for Soc , vol.69 , pp. 152-156
    • Yasue, M.1    Ogiyama, K.2    Suto, S.3    Tsukahara, H.4    Miyahara, F.5
  • 23
    • 34548456864 scopus 로고    scopus 로고
    • Genome scan to detect genetic structure and adaptive genes of natural populations of Cryptomeria japonica
    • DOI 10.1534/genetics.107.072652
    • Tsumura Y, Kado T, Takahashi T, Tani N, Ujino-Ihara T, et al. (2007) Genome scan to detect genetic structure and adaptive genes of natural populations of Cryptomeria japonica. Genetics 176: 2393-2403. (Pubitemid 47360668)
    • (2007) Genetics , vol.176 , Issue.4 , pp. 2393-2403
    • Tsumura, Y.1    Kado, T.2    Takahashi, T.3    Tani, N.4    Ujino-Ihara, T.5    Iwata, H.6
  • 25
    • 77953212730 scopus 로고    scopus 로고
    • Update on epidemiology of pollinosis in Japan: Changes over the last 10 years
    • Nakae K, Baba K (2010) Update on epidemiology of pollinosis in Japan: changes over the last 10 years. Clin Exp Allergy Rev 10: 2-7.
    • (2010) Clin Exp Allergy Rev , vol.10 , pp. 2-7
    • Nakae, K.1    Baba, K.2
  • 26
    • 84939908786 scopus 로고    scopus 로고
    • Tree Breeding Society Tokyo, Japan, : Tree Breeding Society
    • Tree Breeding Society (2004) Tree Breeding Project (in Japanese). Tokyo, Japan, : Tree Breeding Society. 129.
    • (2004) Tree Breeding Project (in Japanese) , pp. 129
  • 27
    • 84869214593 scopus 로고    scopus 로고
    • Genome scanning for detecting adaptive genes along environmental gradients in the Japanese conifer, Cryptomeria japonica
    • Tsumura Y, Uchiyama K, Moriguchi Y, Ueno S, Ujino-Ihara T (2012) Genome scanning for detecting adaptive genes along environmental gradients in the Japanese conifer, Cryptomeria japonica. Heredity 109: 349-360.
    • (2012) Heredity , vol.109 , pp. 349-360
    • Tsumura, Y.1    Uchiyama, K.2    Moriguchi, Y.3    Ueno, S.4    Ujino-Ihara, T.5
  • 28
    • 84896737961 scopus 로고    scopus 로고
    • The evaluation of wood properties of standing trees in Sugi (Cryptomeria japonica) plus tree clones selected in Kanto breeding region
    • in Japanese
    • Mishima K, Iki T, Hiraoka Y, Miyamoto N, Watanabe A (2011) The evaluation of wood properties of standing trees in Sugi (Cryptomeria japonica) plus tree clones selected in Kanto breeding region. (in Japanese). Mokuzai Gakkaishi 57: 256-264.
    • (2011) Mokuzai Gakkaishi , vol.57 , pp. 256-264
    • Mishima, K.1    Iki, T.2    Hiraoka, Y.3    Miyamoto, N.4    Watanabe, A.5
  • 29
    • 77955615733 scopus 로고    scopus 로고
    • System and method for measuring stiffness in standing trees
    • US Patent 6871545
    • Huang CL (2005) System and method for measuring stiffness in standing trees US Patent 6871545.
    • (2005)
    • Huang, C.L.1
  • 30
    • 33646932206 scopus 로고    scopus 로고
    • Variations in acoustic velocity and density with age, and their interrelationships in radiata pine
    • Chauhan SS, Walker JCF (2006) Variations in acoustic velocity and density with age, and their interrelationships in radiata pine. For Ecol Manage 229: 388-394.
    • (2006) For Ecol Manage , vol.229 , pp. 388-394
    • Chauhan, S.S.1    Walker, J.C.F.2
  • 31
    • 0034482017 scopus 로고    scopus 로고
    • Quality evaluation of standing trees by stress wave propagation method and its application. IV. Application to quality evaluation of hinoki (Chamaecyparis obutusa) forests
    • Ikeda K, Kanamori F, Arima T (2000) Quality evaluation of standing trees by stress wave propagation method and its application IV. Application to quality evaluation of hinoki (Chamaecyparis obutusa) forests (in Japanese). Mokuzai Gakkaishi 46: 602-608. (Pubitemid 32136535)
    • (2000) Mokuzai Gakkaishi/Journal of the Japan Wood Research Society , vol.46 , Issue.6 , pp. 602-608
    • Ikeda, K.1    Kanamori, F.2    Arima, T.3
  • 32
    • 0036041077 scopus 로고    scopus 로고
    • Relationship between wood density, microfibril angle and stiffness in thinned and fertilized Pinus radiata
    • Downes GM, Nyakuengama JG, Evans R, Northway R, Blakemore P, et al. (2002) Relationship between wood density, microfibril angle and stiffness in thinned and fertilized Pinus radiata. Iawa Journal 23: 253-266.
    • (2002) Iawa Journal , vol.23 , pp. 253-266
    • Downes, G.M.1    Nyakuengama, J.G.2    Evans, R.3    Northway, R.4    Blakemore, P.5
  • 33
    • 0142134451 scopus 로고    scopus 로고
    • Evaluation of standing tree quality of Japanese cedar grown with different spacing using stress-wave and ultrasonic-wave methods
    • Chuang ST, Wang SY (2001) Evaluation of standing tree quality of Japanese cedar grown with different spacing using stress-wave and ultrasonic-wave methods. J Wood Sci 47: 245-253.
    • (2001) J Wood Sci , vol.47 , pp. 245-253
    • Chuang, S.T.1    Wang, S.Y.2
  • 34
    • 84896726936 scopus 로고    scopus 로고
    • Evaluating a function of wood properties of Sugi (Cryptomeria japonica D. Don) plus tree clones as an index of wood qualities to commercial needs
    • Fujisawa Y, Kuramoto N, Hiraoka Y, Kashiwagi M, Inoue Y (2004) Evaluating a function of wood properties of Sugi (Cryptomeria japonica D. Don) plus tree clones as an index of wood qualities to commercial needs. Kyushu J For Res 57: 210-212.
    • (2004) Kyushu J for Res , vol.57 , pp. 210-212
    • Fujisawa, Y.1    Kuramoto, N.2    Hiraoka, Y.3    Kashiwagi, M.4    Inoue, Y.5
  • 35
    • 84883506951 scopus 로고    scopus 로고
    • Evaluation of male flower production in Sugi (Cryptomeria japonica) plus tree clones selected from Kanto Breeding Region
    • in Japanese
    • Tsubomura M, Fukatsu E, Watanabe A (2013) Evaluation of male flower production in Sugi (Cryptomeria japonica) plus tree clones selected from Kanto Breeding Region (in Japanese). J Jpn For Soc 95: 156-162.
    • (2013) J Jpn for Soc , vol.95 , pp. 156-162
    • Tsubomura, M.1    Fukatsu, E.2    Watanabe, A.3
  • 36
    • 84870891689 scopus 로고    scopus 로고
    • Inheritance of male flower production in Cryptomeria japonica (sugi) estimated from analysis of a diallel mating test
    • Tsubomura M, Fukatsu E, Nakada R, Fukuda Y (2012) Inheritance of male flower production in Cryptomeria japonica (sugi) estimated from analysis of a diallel mating test. Ann For Sci 69: 867-875.
    • (2012) Ann for Sci , vol.69 , pp. 867-875
    • Tsubomura, M.1    Fukatsu, E.2    Nakada, R.3    Fukuda, Y.4
  • 37
    • 0036275126 scopus 로고    scopus 로고
    • BeadArray technology: Enabling an accurate, cost-effective approach to high-throughput genotyping
    • Oliphant A, Barker DL, Stuelpnagel JR, Chee MS (2002) BeadArray technology: enabling an accurate, cost-effective approach to high-throughput genotyping. BioTechniques 32: S56-S61. (Pubitemid 34615025)
    • (2002) BioTechniques , vol.32 , Issue.6 SUPPL.
    • Oliphant, A.1    Barker, D.L.2    Stuelpnagel, J.R.3    Chee, M.S.4
  • 38
  • 39
    • 39549102178 scopus 로고    scopus 로고
    • Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: Application to the large and unsequenced genomes of white spruce and black spruce
    • Pavy N, Pelgas B, Beauseigle S, Blais S, Gagnon F, et al. (2008) Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce. BMC Genomics 9: 21.
    • (2008) BMC Genomics , vol.9 , pp. 21
    • Pavy, N.1    Pelgas, B.2    Beauseigle, S.3    Blais, S.4    Gagnon, F.5
  • 40
    • 57349107224 scopus 로고    scopus 로고
    • High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.)
    • Eckert AJ, Pande B, Ersoz ES, Wright MH, Rashbrook VK, et al. (2009) High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.). Tree Genet Genom 5: 225-234.
    • (2009) Tree Genet Genom , vol.5 , pp. 225-234
    • Eckert, A.J.1    Pande, B.2    Ersoz, E.S.3    Wright, M.H.4    Rashbrook, V.K.5
  • 41
    • 84869862330 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms in Cryptomeria japonica: Their discovery and validation for genome mapping and diversity studies
    • Uchiyama K, Ujino-Ihara T, Ueno S, Taguchi Y, Futamura N, et al. (2012) Single nucleotide polymorphisms in Cryptomeria japonica: their discovery and validation for genome mapping and diversity studies. Tree Genet Genom 8: 1213-1222.
    • (2012) Tree Genet Genom , vol.8 , pp. 1213-1222
    • Uchiyama, K.1    Ujino-Ihara, T.2    Ueno, S.3    Taguchi, Y.4    Futamura, N.5
  • 42
    • 0000480797 scopus 로고
    • Molecular phylogeny of conifers using RFLP analysis of PCR-amplified specific chloroplast genes
    • Tsumura Y, Yoshimura K, Tomaru N, Ohba K (1995) Molecular phylogeny of conifers using RFLP analysis of PCR-amplified specific chloroplast genes. Theor Appl Genet 91: 1222-1236.
    • (1995) Theor Appl Genet , vol.91 , pp. 1222-1236
    • Tsumura, Y.1    Yoshimura, K.2    Tomaru, N.3    Ohba, K.4
  • 43
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959. (Pubitemid 30397141)
    • (2000) Genetics , vol.155 , Issue.2 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 44
    • 84858168186 scopus 로고    scopus 로고
    • The construction of a high-density linkage map for identifying SNP markers that are tightly linked to a nuclear-recessive major gene for male sterility in Cryptomeria japonica D. Don
    • Moriguchi Y, Ujino-Ihara T, Uchiyama K, Futamura N, Saito M, et al. (2012) The construction of a high-density linkage map for identifying SNP markers that are tightly linked to a nuclear-recessive major gene for male sterility in Cryptomeria japonica D. Don. BMC Genomics 13: 95.
    • (2012) BMC Genomics , vol.13 , pp. 95
    • Moriguchi, Y.1    Ujino-Ihara, T.2    Uchiyama, K.3    Futamura, N.4    Saito, M.5
  • 46
    • 0000262278 scopus 로고
    • Genepop (version 1.2): Population genetics software for exact tests and ecumenicism
    • Raymond M, Rousset F (1995) Genepop (version 1.2): Population genetics software for exact tests and ecumenicism. J Hered 86: 248-249.
    • (1995) J Hered , vol.86 , pp. 248-249
    • Raymond, M.1    Rousset, F.2
  • 47
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587. (Pubitemid 37102217)
    • (2003) Genetics , vol.164 , Issue.4 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 48
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study
    • DOI 10.1111/j.1365-294X.2005.02553.x
    • Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: 2611-2620. (Pubitemid 40886055)
    • (2005) Molecular Ecology , vol.14 , Issue.8 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 49
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team R Foundation for Statistical Computing, Vienna, Austria
    • R Development Core Team (2007) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. www.R-project.org.
    • (2007) R: A Language and Environment for Statistical Computing
  • 50
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B Stat Methodol: 289-300.
    • (1995) J R Stat Soc Series B Stat Methodol , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 51
    • 45149105926 scopus 로고    scopus 로고
    • Efficient control of population structure in model organism association mapping
    • Kang HM, Zaitlen NA, Wade CM, Kirby A, Heckerman D, et al. (2008) Efficient control of population structure in model organism association mapping. Genetics 178: 1709.
    • (2008) Genetics , vol.178 , pp. 1709
    • Kang, H.M.1    Zaitlen, N.A.2    Wade, C.M.3    Kirby, A.4    Heckerman, D.5
  • 54
    • 37249083895 scopus 로고    scopus 로고
    • The impact of genetic relationship information on genome-assisted breeding values
    • DOI 10.1534/genetics.107.081190
    • Habier D, Fernando RL, Dekkers JCM (2007) The impact of genetic relationship information on genome-assisted breeding values. Genetics 177: 2389-2397. (Pubitemid 350277013)
    • (2007) Genetics , vol.177 , Issue.4 , pp. 2389-2397
    • Habier, D.1    Fernando, R.L.2    Dekkers, J.C.M.3
  • 55
    • 0345822598 scopus 로고    scopus 로고
    • The positive false discovery rate: A Bayesian interpretation and the q-value
    • Storey JD (2003) The positive false discovery rate: A Bayesian interpretation and the q-value. Ann Stat 31: 2013-2035.
    • (2003) Ann Stat , vol.31 , pp. 2013-2035
    • Storey, J.D.1
  • 57
    • 85136354327 scopus 로고    scopus 로고
    • Ridge regression and other kernels for genomic selection with R package rrBLUP
    • Endelman JB (2011) Ridge regression and other kernels for genomic selection with R package rrBLUP. The Plant Genome 4: 250-255.
    • (2011) The Plant Genome , vol.4 , pp. 250-255
    • Endelman, J.B.1
  • 59
    • 0028090414 scopus 로고
    • Genetic dissection of complex traits
    • Lander ES, Schork NJ (1994) Genetic dissection of complex traits. Science 265: 2037.
    • (1994) Science , vol.265 , pp. 2037
    • Lander, E.S.1    Schork, N.J.2
  • 60
    • 34248372860 scopus 로고    scopus 로고
    • Bayesian association mapping of multiple quantitative trait loci and its application to the analysis of genetic variation among Oryza sativa L. germplasms
    • DOI 10.1007/s00122-007-0529-x
    • Iwata H, Uga Y, Yoshioka Y, Ebana K, Hayashi T (2007) Bayesian association mapping of multiple quantitative trait loci and its application to the analysis of genetic variation among Oryza sativa L. germplasms. Theor Appl Genet 114: 1437-1449. (Pubitemid 46733385)
    • (2007) Theoretical and Applied Genetics , vol.114 , Issue.8 , pp. 1437-1449
    • Iwata, H.1    Uga, Y.2    Yoshioka, Y.3    Ebana, K.4    Hayashi, T.5
  • 62
    • 33644781694 scopus 로고    scopus 로고
    • Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars
    • DOI 10.1534/genetics.105.044586
    • Breseghello F, Sorrells ME (2006) Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172: 1165-1177. (Pubitemid 43345448)
    • (2006) Genetics , vol.172 , Issue.2 , pp. 1165-1177
    • Breseghello, F.1    Sorrells, M.E.2
  • 63
    • 33947323124 scopus 로고    scopus 로고
    • Association mapping of yield and its components in rice cultivars
    • DOI 10.1007/s11032-006-9066-6
    • Agrama HA, Eizenga GC, Yan W (2007) Association mapping of yield and its components in rice cultivars. Mol Breed 19: 341-356. (Pubitemid 46440195)
    • (2007) Molecular Breeding , vol.19 , Issue.4 , pp. 341-356
    • Agrama, H.A.1    Eizenga, G.C.2    Yan, W.3
  • 64
    • 67349129040 scopus 로고    scopus 로고
    • Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin
    • Comadran J, Thomas WTB, Van Eeuwijk FA, Ceccarelli S, Grando S, et al. (2009) Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theor Appl Genet 119: 175-187.
    • (2009) Theor Appl Genet , vol.119 , pp. 175-187
    • Comadran, J.1    Thomas, W.T.B.2    Van Eeuwijk, F.A.3    Ceccarelli, S.4    Grando, S.5
  • 66
    • 17444386263 scopus 로고    scopus 로고
    • Genetic structure and diversity in Oryza sativa L.
    • DOI 10.1534/genetics.104.035642
    • Garris AJ, Tai TH, Coburn J, Kresovich S, McCouch S (2005) Genetic structure and diversity in Oryza sativa L. Genetics 169: 1631-1638. (Pubitemid 40547470)
    • (2005) Genetics , vol.169 , Issue.3 , pp. 1631-1638
    • Garris, A.J.1    Tai, T.H.2    Coburn, J.3    Kresovich, S.4    McCouch, S.5
  • 67
    • 17644404102 scopus 로고    scopus 로고
    • Genetic structure of montane isolates of Pinus sylvestris L. in a Mediterranean refugial area
    • DOI 10.1111/j.1365-2699.2004.01196.x
    • Robledo-Arnuncio JJ, Collada C, Alia R, Gil L (2005) Genetic structure of montane isolates of Pinus sylvestris L. in a Mediterranean refugial area. J Biogeogr 32: 595-605. (Pubitemid 40554731)
    • (2005) Journal of Biogeography , vol.32 , Issue.4 , pp. 595-605
    • Robledo-Arnuncio, J.J.1    Collada, C.2    Alia, R.3    Gil, L.4
  • 69
    • 0037188972 scopus 로고    scopus 로고
    • Population dynamics of Pinus taeda L. based on nuclear microsatellites
    • Al-Rabab'ah MA, Williams CG (2002) Population dynamics of Pinus taeda L. based on nuclear microsatellites. For Ecol Manage 163: 263-271.
    • (2002) For Ecol Manage , vol.163 , pp. 263-271
    • Al-Rabab'ah, M.A.1    Williams, C.G.2
  • 70
    • 0036149896 scopus 로고    scopus 로고
    • Low nucleotide diversity at the pal1 locus in the widely distributed Pinus sylvestris
    • Dvornyk V, Sirviö A, Mikkonen M, Savolainen O (2002) Low nucleotide diversity at the pal1 locus in the widely distributed Pinus sylvestris. Mol Biol Evol 19: 179-188. (Pubitemid 34094659)
    • (2002) Molecular Biology and Evolution , vol.19 , Issue.2 , pp. 179-188
    • Dvornyk, V.1    Sirvio, A.2    Mikkonen, M.3    Savolainen, O.4
  • 71
    • 79952102682 scopus 로고    scopus 로고
    • Population genetics of genomics-based crop improvement methods
    • Hamblin MT, Buckler ES, Jannink JL (2011) Population genetics of genomics-based crop improvement methods. Trends Genet 27: 98-106.
    • (2011) Trends Genet , vol.27 , pp. 98-106
    • Hamblin, M.T.1    Buckler, E.S.2    Jannink, J.L.3
  • 72
    • 17844404294 scopus 로고    scopus 로고
    • Linkage disequilibrium and association studies in higher plants: Present status and future prospects
    • DOI 10.1007/s11103-005-0257-z
    • Gupta PK, Rustgi S, Kulwal PL (2005) Linkage disequilibrium and association studies in higher plants: present status and future prospects. Plant Mol Biol 57: 461-485. (Pubitemid 40588706)
    • (2005) Plant Molecular Biology , vol.57 , Issue.4 , pp. 461-485
    • Gupta, P.K.1    Rustgi, S.2    Kulwal, P.L.3
  • 75
    • 0242286593 scopus 로고    scopus 로고
    • Population Structure and Its Effect on Haplotype Diversity and Linkage Disequilibrium Surrounding the xa5 Locus of Rice (Oryza sativa L.)
    • Garris AJ, McCouch SR, Kresovich S (2003) Population structure and its effect on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L.). Genetics 165: 759-769. (Pubitemid 37337641)
    • (2003) Genetics , vol.165 , Issue.2 , pp. 759-769
    • Garris, A.J.1    McCouch, S.R.2    Kresovich, S.3
  • 78
    • 33845746244 scopus 로고    scopus 로고
    • Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce [Picea abies (L.) Karst]
    • DOI 10.1534/genetics.106.065102
    • Heuertz M, De Paoli E, Kallman T, Larsson H, Jurman I, et al. (2006) Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce Picea abies (L.) Karst. Genetics 174: 2095-2105. (Pubitemid 46011597)
    • (2006) Genetics , vol.174 , Issue.4 , pp. 2095-2105
    • Heuertz, M.1    De Paoli, E.2    Kallman, T.3    Larsson, H.4    Jurman, I.5    Morgante, M.6    Lascoux, M.7    Gyllenstrand, N.8
  • 79
    • 37249019973 scopus 로고    scopus 로고
    • Demographic history has influenced nucleotide diversity in European Pinus sylvestris populations
    • DOI 10.1534/genetics.107.077099
    • Pyhäjärvi T, García-Gil MR, Knürr T, Mikkonen M, Wachowiak W, et al. (2007) Demographic history has influenced nucleotide diversity in European Pinus sylvestris populations. Genetics 177: 1713-1724. (Pubitemid 350277064)
    • (2007) Genetics , vol.177 , Issue.3 , pp. 1713-1724
    • Pyhajarvi, T.1    Garcia-Gil, M.R.2    Knurr, T.3    Mikkonen, M.4    Wachowiak, W.5    Savolainen, O.6
  • 80
    • 41149124114 scopus 로고    scopus 로고
    • Population, quantitative and comparative genomics of adaptation in forest trees
    • Neale DB, Ingvarsson PK (2008) Population, quantitative and comparative genomics of adaptation in forest trees. Curr Opin Plant Biol 11: 149-155.
    • (2008) Curr Opin Plant Biol , vol.11 , pp. 149-155
    • Neale, D.B.1    Ingvarsson, P.K.2
  • 82
    • 69949135484 scopus 로고    scopus 로고
    • Association mapping: Critical considerations shift from genotyping to experimental design
    • Myles S, Peiffer J, Brown PJ, Ersoz ES, Zhang Z, et al. (2009) Association mapping: critical considerations shift from genotyping to experimental design. The Plant Cell Online 21: 2194.
    • (2009) The Plant Cell Online , vol.21 , pp. 2194
    • Myles, S.1    Peiffer, J.2    Brown, P.J.3    Ersoz, E.S.4    Zhang, Z.5
  • 83
    • 45349107286 scopus 로고    scopus 로고
    • Application of association mapping to understanding the genetic diversity of plant germplasm resources
    • Abdurakhmonov IY, Abdukarimov A (2008) Application of association mapping to understanding the genetic diversity of plant germplasm resources. Int J Plant Genomics 2008.
    • (2008) Int J Plant Genomics , vol.2008
    • Abdurakhmonov, I.Y.1    Abdukarimov, A.2
  • 84
    • 77955166399 scopus 로고    scopus 로고
    • Population structure and cryptic relatedness in genetic association studies
    • Astle W, Balding DJ (2009) Population structure and cryptic relatedness in genetic association studies. Stat Sci 24: 451-471.
    • (2009) Stat Sci , vol.24 , pp. 451-471
    • Astle, W.1    Balding, D.J.2
  • 86
    • 84866912436 scopus 로고    scopus 로고
    • Mixed model association mapping for Fusarium head blight resistance in Tunisian-derived durum wheat populations
    • Ghavami F, Elias EM, Mamidi S, Ansari O, Sargolzaei M, et al. (2011) Mixed model association mapping for Fusarium head blight resistance in Tunisian-derived durum wheat populations. G3: Genes, Genomes, Genetics 1: 209-218.
    • (2011) G3: Genes, Genomes, Genetics , vol.1 , pp. 209-218
    • Ghavami, F.1    Elias, E.M.2    Mamidi, S.3    Ansari, O.4    Sargolzaei, M.5
  • 87
    • 85167507047 scopus 로고    scopus 로고
    • Genome-wide association analysis identifies candidate genes associated with iron deficiency chlorosis in soybean
    • Mamidi S, Chikara S, Goos RJ, Hyten DL, Annam D, et al. (2011) Genome-wide association analysis identifies candidate genes associated with iron deficiency chlorosis in soybean. The Plant Genome 4: 154-164.
    • (2011) The Plant Genome , vol.4 , pp. 154-164
    • Mamidi, S.1    Chikara, S.2    Goos, R.J.3    Hyten, D.L.4    Annam, D.5
  • 88
    • 70349525364 scopus 로고    scopus 로고
    • Genome-wide association mapping of quantitative traits in sorghum (Sorghum bicolor (L.) Moench) by using multiple models
    • Shehzad T, Iwata H, Okuno K (2009) Genome-wide association mapping of quantitative traits in sorghum (Sorghum bicolor (L.) Moench) by using multiple models. Breed Sci 59: 217-227.
    • (2009) Breed Sci , vol.59 , pp. 217-227
    • Shehzad, T.1    Iwata, H.2    Okuno, K.3
  • 90
    • 0344153471 scopus 로고    scopus 로고
    • Selection in a model system: Ecological genetics of flowering time in Arabidopsis thaliana
    • Pigliucci M (2003) Selection in a model system: ecological genetics of flowering time in Arabidopsis thaliana . Ecology 84: 1700-1712.
    • (2003) Ecology , vol.84 , pp. 1700-1712
    • Pigliucci, M.1
  • 91
    • 33646204702 scopus 로고    scopus 로고
    • Variation at two flowering time genes within and among populations of Arabidopsis thaliana: Comparison with markers and traits
    • Corre V (2005) Variation at two flowering time genes within and among populations of Arabidopsis thaliana: comparison with markers and traits. Mol Ecol 14: 4181-4192.
    • (2005) Mol Ecol , vol.14 , pp. 4181-4192
    • Corre, V.1
  • 92
    • 34547191801 scopus 로고    scopus 로고
    • Distribution history of Cryptomeria forest
    • Yasuda Y, Miyoshi N, editors. Tokyo: Asakura-Shoten
    • Takahara H (1998) Distribution history of Cryptomeria forest. In: Yasuda Y, Miyoshi N, editors. Vegetation history of the Japanese Archipelago (in Japanese). Tokyo: Asakura-Shoten.
    • (1998) Vegetation History of the Japanese Archipelago (in Japanese)
    • Takahara, H.1
  • 93
    • 0039005860 scopus 로고    scopus 로고
    • Signaling to the actin cytoskeleton in plants
    • Staiger CJ (2000) Signaling to the actin cytoskeleton in plants. Annu Rev Plant Biol 51: 257-288.
    • (2000) Annu Rev Plant Biol , vol.51 , pp. 257-288
    • Staiger, C.J.1
  • 94
    • 78751613558 scopus 로고    scopus 로고
    • Allelic variation in cell wall candidate genes affecting solid wood properties in natural populations and land races of Pinus radiata
    • Dillon SK, Nolan M, Li W, Bell C, Wu HX, et al. (2010) Allelic variation in cell wall candidate genes affecting solid wood properties in natural populations and land races of Pinus radiata. Genetics 185: 1477-1487.
    • (2010) Genetics , vol.185 , pp. 1477-1487
    • Dillon, S.K.1    Nolan, M.2    Li, W.3    Bell, C.4    Wu, H.X.5
  • 95
    • 32544439334 scopus 로고    scopus 로고
    • Polymorphisms in cinnamoyl CoA reductase (CCR) are associated with variation in microfibril angle in Eucalyptus spp.
    • DOI 10.1534/genetics.105.042028
    • Thumma BR, Nolan MF, Evans R, Moran GF (2005) Polymorphisms in cinnamoyl CoA reductase (CCR) are associated with variation in microfibril angle in Eucalyptus spp. Genetics 171: 1257-1265. (Pubitemid 43234857)
    • (2005) Genetics , vol.171 , Issue.3 , pp. 1257-1265
    • Thumma, B.R.1    Nolan, M.F.2    Evans, R.3    Moran, G.F.4
  • 96
    • 72449203628 scopus 로고    scopus 로고
    • Identification of a cis-acting regulatory polymorphism in a eucalypt COBRA-like gene affecting cellulose content
    • Thumma BR, Matheson BA, Zhang D, Meeske C, Meder R, et al. (2009) Identification of a cis-acting regulatory polymorphism in a eucalypt COBRA-like gene affecting cellulose content. Genetics 183: 1153-1164.
    • (2009) Genetics , vol.183 , pp. 1153-1164
    • Thumma, B.R.1    Matheson, B.A.2    Zhang, D.3    Meeske, C.4    Meder, R.5
  • 97
    • 45849093336 scopus 로고    scopus 로고
    • Nucleotide polymorphism and phenotypic associations within and around the phytochrome B2 locus in European aspen (Populus tremula, Salicaceae)
    • Ingvarsson PK, Garcia M, Luquez V, Hall D, Jansson S (2008) Nucleotide polymorphism and phenotypic associations within and around the phytochrome B2 locus in European aspen (Populus tremula, Salicaceae). Genetics 178: 2217.
    • (2008) Genetics , vol.178 , pp. 2217
    • Ingvarsson, P.K.1    Garcia, M.2    Luquez, V.3    Hall, D.4    Jansson, S.5
  • 98
    • 78751550555 scopus 로고    scopus 로고
    • Forest tree genomics: Growing resources and applications
    • Neale DB, Kremer A (2011) Forest tree genomics: growing resources and applications. Nat Rev Genet 12: 111.
    • (2011) Nat Rev Genet , vol.12 , pp. 111
    • Neale, D.B.1    Kremer, A.2
  • 99
    • 79953027163 scopus 로고    scopus 로고
    • Revisiting protein heterozygosity in plants-ucleotide diversity in allozyme coding genes of conifer Pinus sylvestris
    • Pyhäjärvi T, Kujala ST, Savolainen O (2011) Revisiting protein heterozygosity in plants-ucleotide diversity in allozyme coding genes of conifer Pinus sylvestris. Tree Genet Genom 7: 385-397.
    • (2011) Tree Genet Genom , vol.7 , pp. 385-397
    • Pyhäjärvi, T.1    Kujala, S.T.2    Savolainen, O.3
  • 101
    • 84858185558 scopus 로고    scopus 로고
    • Extended linkage disequilibrium in noncoding regions in a conifer, Cryptomeria japonica
    • Moritsuka E, Hisataka Y, Tamura M, Uchiyama K, Watanabe A, et al. (2012) Extended linkage disequilibrium in noncoding regions in a conifer, Cryptomeria japonica. Genetics 190: 1145-1148.
    • (2012) Genetics , vol.190 , pp. 1145-1148
    • Moritsuka, E.1    Hisataka, Y.2    Tamura, M.3    Uchiyama, K.4    Watanabe, A.5
  • 102
    • 33845768012 scopus 로고    scopus 로고
    • Recombination: An underappreciated factor in the evolution of plant genomes
    • DOI 10.1038/nrg1970, PII NRG1970
    • Gaut BS, Wright SI, Rizzon C, Dvorak J, Anderson LK (2007) Recombination: an underappreciated factor in the evolution of plant genomes. Nat Rev Genet 8: 77-84. (Pubitemid 46006052)
    • (2007) Nature Reviews Genetics , vol.8 , Issue.1 , pp. 77-84
    • Gaut, B.S.1    Wright, S.I.2    Rizzon, C.3    Dvorak, J.4    Anderson, L.K.5
  • 103
    • 0000328783 scopus 로고
    • Genome size in gymnosperms
    • Ohri D, Khoshoo TN (1986) Genome size in gymnosperms. Plant Syst Evol 153: 119-132.
    • (1986) Plant Syst Evol , vol.153 , pp. 119-132
    • Ohri, D.1    Khoshoo, T.N.2
  • 104
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome-wide dense marker maps
    • Meuwissen TH, Hayes BJ, Goddard ME (2001) Prediction of total genetic value using genome-wide dense marker maps. Genetics 157: 1819-1829. (Pubitemid 32298846)
    • (2001) Genetics , vol.157 , Issue.4 , pp. 1819-1829
    • Meuwissen, T.H.E.1    Hayes, B.J.2    Goddard, M.E.3
  • 105
    • 77951987956 scopus 로고    scopus 로고
    • Genomic selection in plant breeding: From theory to practice
    • Jannink J-L, Lorenz AJ, Iwata H (2010) Genomic selection in plant breeding: from theory to practice. Brief Funct Genomics 9: 166-177.
    • (2010) Brief Funct Genomics , vol.9 , pp. 166-177
    • Jannink, J.-L.1    Lorenz, A.J.2    Iwata, H.3
  • 106
  • 107
    • 79960569740 scopus 로고    scopus 로고
    • Prospects for genomic selection in conifer breeding: A simulation study of Cryptomeria japonica
    • Iwata H, Hayashi T, Tsumura Y (2011) Prospects for genomic selection in conifer breeding: a simulation study of Cryptomeria japonica. Tree Genet Genom: 1-12.
    • (2011) Tree Genet Genom , pp. 1-12
    • Iwata, H.1    Hayashi, T.2    Tsumura, Y.3
  • 108
    • 84857384716 scopus 로고    scopus 로고
    • Genomic selection for growth and wood quality in Eucalyptus: Capturing the missing heritability and accelerating breeding for complex traits in forest trees
    • Resende MDV, Resende Jr MrFR, Sansaloni CP, Petroli CD, Missiaggia AA, et al. (2012) Genomic selection for growth and wood quality in Eucalyptus: capturing the missing heritability and accelerating breeding for complex traits in forest trees. New Phytol 194: 116-128.
    • (2012) New Phytol , vol.194 , pp. 116-128
    • Resende, M.D.V.1    Resende Jr., Mr.F.R.2    Sansaloni, C.P.3    Petroli, C.D.4    Missiaggia, A.A.5
  • 109
    • 84855802587 scopus 로고    scopus 로고
    • Accelerating the domestication of trees using genomic selection: Accuracy of prediction models across ages and environments
    • Resende Jr MFR, Munoz P, Acosta JJ, Peter GF, Davis JM, et al. (2012) Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments. New Phytol 193: 617-624.
    • (2012) New Phytol , vol.193 , pp. 617-624
    • Resende Jr., M.F.R.1    Munoz, P.2    Acosta, J.J.3    Peter, G.F.4    Davis, J.M.5
  • 110
    • 84859625578 scopus 로고    scopus 로고
    • Accuracy of genomic selection methods in a standard data set of Loblolly Pine (Pinus taeda L.)
    • Resende Jr MFR, Muñoz P, Resende MDV, Garrick DJ, Fernando RL, et al. (2012) Accuracy of genomic selection methods in a standard data set of Loblolly Pine (Pinus taeda L.). Genetics 190: 1503-1510.
    • (2012) Genetics , vol.190 , pp. 1503-1510
    • Resende Jr., M.F.R.1    Muñoz, P.2    Resende, M.D.V.3    Garrick, D.J.4    Fernando, R.L.5
  • 111
    • 79959435199 scopus 로고    scopus 로고
    • Genome-wide genetic marker discovery and genotyping using next-generation sequencing
    • Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, et al. (2011) Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat Rev Genet 12: 499-510.
    • (2011) Nat Rev Genet , vol.12 , pp. 499-510
    • Davey, J.W.1    Hohenlohe, P.A.2    Etter, P.D.3    Boone, J.Q.4    Catchen, J.M.5
  • 112
    • 84857200889 scopus 로고    scopus 로고
    • NGS technologies for analyzing germplasm diversity in genebanks
    • Kilian B, Graner A (2012) NGS technologies for analyzing germplasm diversity in genebanks. Brief Funct Genomics 11: 38-50.
    • (2012) Brief Funct Genomics , vol.11 , pp. 38-50
    • Kilian, B.1    Graner, A.2
  • 113
    • 79955783956 scopus 로고    scopus 로고
    • A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
    • Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, et al. (2011) A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One 6: e19379.
    • (2011) PLoS One , vol.6
    • Elshire, R.J.1    Glaubitz, J.C.2    Sun, Q.3    Poland, J.A.4    Kawamoto, K.5
  • 114
    • 84871906959 scopus 로고    scopus 로고
    • Accessing complex crop genomes with next-generation sequencing
    • Edwards D, Batley J, Snowdon RJ (2013) Accessing complex crop genomes with next-generation sequencing. Theor Appl Genet 126: 1-11.
    • (2013) Theor Appl Genet , vol.126 , pp. 1-11
    • Edwards, D.1    Batley, J.2    Snowdon, R.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.