메뉴 건너뛰기




Volumn 8, Issue 11, 2013, Pages

Molecular characterization and chromosomal distribution of a species-specific transcribed centromeric satellite repeat from the olive fruit fly, Bactrocera oleae

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; SATELLITE DNA;

EID: 84896731754     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0079393     Document Type: Article
Times cited : (19)

References (47)
  • 1
    • 0028108183 scopus 로고
    • The evolutionary dynamics of repetitive DNA in eukaryotes
    • DOI 10.1038/371215a0
    • Charlesworth B, Sniegowski P, Stephan W (1994) The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371: 215-220. (Pubitemid 24293018)
    • (1994) Nature , vol.371 , Issue.6494 , pp. 215-220
    • Charlesworth, B.1    Sniegowski, P.2    Stephan, W.3
  • 2
    • 0020478245 scopus 로고
    • Molecular drive: A cohesive mode of species evolution
    • Dover G (1982) Molecular drive: a cohesive mode of species evolution. Nature 299: 111-117.
    • (1982) Nature , vol.299 , pp. 111-117
    • Dover, G.1
  • 3
    • 0345492218 scopus 로고
    • Molecular drive in multigene families: How biological novelties arise, spread and are assimilated
    • Dover GA (1986) Molecular drive in multigene families: how biological novelties arise, spread and are assimilated. Trends in Genetics 2: 159-165.
    • (1986) Trends in Genetics , vol.2 , pp. 159-165
    • Dover, G.A.1
  • 4
    • 0037112912 scopus 로고    scopus 로고
    • Variation in satellite DNA profiles - Causes and effects
    • DOI 10.1093/emboj/cdf612
    • Ugarkovic D, Plohl M (2002) Variation in satellite DNA profiles - causes and effects. EMBO J 21: 5955-5959. (Pubitemid 35415313)
    • (2002) EMBO Journal , vol.21 , Issue.22 , pp. 5955-5959
    • Ugarkovic, D.1    Plohl, M.2
  • 5
    • 0026076336 scopus 로고
    • Fine mapping of satellite DNA sequences along the Y chromosome of Drosophila melanogaster: Relationships between satellite sequences and fertility factors
    • Bonaccorsi S, Lohe A (1991) Fine mapping of satellite DNA sequences along the Y chromosome of Drosophila melanogaster: relationships between satellite sequences and fertility factors. Genetics 129: 177-189.
    • (1991) Genetics , vol.129 , pp. 177-189
    • Bonaccorsi, S.1    Lohe, A.2
  • 6
    • 0029767461 scopus 로고    scopus 로고
    • Chromosomal localization of a highly repeated EcoRI DNA fragment in Megoura viciae (Homoptera, Aphididae) by nick translation and fluorescence in situ hybridization
    • Bizzaro D, Manicardi GC, Bianchi U (1996) Chromosomal localization of a highly repeated EcoRI DNA fragment in Megoura viciae (Homoptera, Aphididae) by nick translation and fluorescence in situ hybridization. Chromosome research? 4: 392-396. (Pubitemid 26273356)
    • (1996) Chromosome Research , vol.4 , Issue.5 , pp. 392-396
    • Bizzaro, D.1    Manicardi, G.C.2    Bianchi, U.3
  • 7
    • 0029974068 scopus 로고    scopus 로고
    • Satellite DNA of the red flour beetle Tribolium castaneum - Comparative study of satellites from the genus Tribolium
    • Ugarkovic D, Podnar M, Plohl M (1996) Satellite dna of the red flour beetle tribolium castaneum - comparative study of satellites from the genus tribolium. Molecular Biology and Evolution 13; 1059-1066. (Pubitemid 26346243)
    • (1996) Molecular Biology and Evolution , vol.13 , Issue.8 , pp. 1059-1066
    • Ugarkovic, D.1    Podnar, M.2    Plohl, M.3
  • 8
    • 0031903901 scopus 로고    scopus 로고
    • Evolution of satellite DNAs from the genus Palorus-experimental evidence for the "library" hypothesis
    • Mestrović N, Plohl M, Mravinac B, Ugarković D (1998) Evolution of satellite DNAs from the genus Palorus-experimental evidence for the "library" hypothesis. Molecular Biology and Evolution 15: 1062-1068.
    • (1998) Molecular Biology and Evolution , vol.15 , pp. 1062-1068
    • Mestrović, N.1    Plohl, M.2    Mravinac, B.3    Ugarković, D.4
  • 9
    • 1042281043 scopus 로고    scopus 로고
    • On the pBuM189 satellite DNA variability among South American populations of Drosophila buzzatii
    • DOI 10.1111/j.1601-5223.2003.01797.x
    • Kuhn GCS, Franco FF, Silva Jr WA, Martinez-Rossi NM, Sene FM (2003) On the pBuM189 satellite DNA variability among South American populations of Drosophila buzzatii. Hereditas 139: 161-166. (Pubitemid 38195294)
    • (2003) Hereditas , vol.139 , Issue.3 , pp. 161-166
    • Kuhn, G.C.S.1    Franco, F.F.2    Silva Jr., W.A.3    Martinez-Rossi, N.M.4    Sene, F.M.5
  • 10
    • 17044388159 scopus 로고    scopus 로고
    • Evolutionary turnover of two pBuM satellite DNA subfamilies in the Drosophila buzzatii species cluster (repleta group): From alpha to alpha/beta arrays
    • Kuhn GCS, Sene FM (2005) Evolutionary turnover of two pBuM satellite DNA subfamilies in the Drosophila buzzatii species cluster (repleta group): from alpha to alpha/beta arrays. Gene 349: 77-85.
    • (2005) Gene , vol.349 , pp. 77-85
    • Kuhn, G.C.S.1    Sene, F.M.2
  • 11
    • 0038247914 scopus 로고    scopus 로고
    • Evolutionary dynamics of a satellite DNA in the tiger beetle species pair Cicindela campestris and C. Maroccana
    • Gallin J, Vogler AP (2003) Evolutionary dynamics of a satellite DNA in the tiger beetle species pair Cicindela campestris and C. maroccana. Genome 46: 213-223.
    • (2003) Genome , vol.46 , pp. 213-223
    • Gallin, J.1    Vogler, A.P.2
  • 12
    • 0035839066 scopus 로고    scopus 로고
    • The centromere paradox: Stable inheritance with rapidly evolving DNA
    • DOI 10.1126/science.1062939
    • Henikoff S, Ahmad K, Malik HS (2001) The centromere paradox: stable inheritance with rapidly evolving DNA. Science 293: 1098-1102. (Pubitemid 32758083)
    • (2001) Science , vol.293 , Issue.5532 , pp. 1098-1102
    • Henikoff, S.1    Ahmad, K.2    Malik, H.S.3
  • 13
    • 27844475695 scopus 로고    scopus 로고
    • Functional elements residing within satellite DNAs
    • Ugarkovic D (2005) Functional elements residing within satellite DNAs. EMBO reports 6: 1035-1039.
    • (2005) EMBO Reports , vol.6 , pp. 1035-1039
    • Ugarkovic, D.1
  • 14
    • 33751216131 scopus 로고    scopus 로고
    • Centromeres put epigenetics in the driver's seat
    • DOI 10.1016/j.tibs.2006.10.004, PII S0968000406002945
    • Dawe RK, Henikoff S (2006) Centromeres put epigenetics in the driver's seat. Trends Biochem Sci 31: 662-669. (Pubitemid 44791947)
    • (2006) Trends in Biochemical Sciences , vol.31 , Issue.12 , pp. 662-669
    • Dawe, R.K.1    Henikoff, S.2
  • 15
    • 38349081152 scopus 로고    scopus 로고
    • Satellite DNAs between selfishness and functionality: Structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin
    • Plohl M, Luchetti A, Mestrović N, Mantovani B (2008) Satellite DNAs between selfishness and functionality: structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin. Gene 409: 72-82.
    • (2008) Gene , vol.409 , pp. 72-82
    • Plohl, M.1    Luchetti, A.2    Mestrović, N.3    Mantovani, B.4
  • 16
    • 44349092980 scopus 로고    scopus 로고
    • Satellite DNA in insects: A review
    • DOI 10.1038/hdy.2008.24, PII HDY200824
    • Palomeque T, Lorite P (2008) Satellite DNA in insects: a review. Heredity 100: 564-573. (Pubitemid 351733271)
    • (2008) Heredity , vol.100 , Issue.6 , pp. 564-573
    • Palomeque, T.1    Lorite, P.2
  • 18
    • 79952346575 scopus 로고    scopus 로고
    • Interchromosomal duplications on the Bactrocera oleae Y chromosome imply a distinct evolutionary origin of the sex chromosomes compared to Drosophila
    • Gabrieli P, Gomulski LM, Bonomi A, Siciliano P, Scolari F, et al. (2011) Interchromosomal duplications on the Bactrocera oleae Y chromosome imply a distinct evolutionary origin of the sex chromosomes compared to Drosophila. PloS one 6: e17747.
    • (2011) PloS One , vol.6
    • Gabrieli, P.1    Gomulski, L.M.2    Bonomi, A.3    Siciliano, P.4    Scolari, F.5
  • 19
    • 84866526299 scopus 로고    scopus 로고
    • Sex chromosomes and associated rDNA form a heterochromatic network in the polytene nuclei of Bactrocera oleae (Diptera: Tephritidae)
    • Drosopoulou E, Nakou I, Síchová J, Kubíč ková S, Marec F, et al. (2012) Sex chromosomes and associated rDNA form a heterochromatic network in the polytene nuclei of Bactrocera oleae (Diptera: Tephritidae). Genetica 140: 169-180.
    • (2012) Genetica , vol.140 , pp. 169-180
    • Drosopoulou, E.1    Nakou, I.2    Síchová, J.3    Kubíč ková, S.4    Marec, F.5
  • 20
    • 0036760460 scopus 로고    scopus 로고
    • Genetic and cytogenetic analysis of the olive fruit fly Bactrocera oleae (Diptera: Tephritidae)
    • Mavragani-Tsipidou P (2002) Genetic and cytogenetic analysis of the olive fruit fly Bactrocera oleae (Diptera: Tephritidae). Genetica 116: 45-57.
    • (2002) Genetica , vol.116 , pp. 45-57
    • Mavragani-Tsipidou, P.1
  • 21
    • 15744371859 scopus 로고    scopus 로고
    • Isolation and characterization of the Bactrocera oleae genes orthologous to the sex determining Sex-lethal and doublesex genes of Drosophila melanogaster
    • DOI 10.1016/j.gene.2004.12.053
    • Lagos D, Ruiz MF, Sánchez L, Komitopoulou K (2005) Isolation and characterization of the Bactrocera oleae genes orthologous to the sex determining Sex-lethal and doublesex genes of Drosophila melanogaster. Gene. Vol. 348. 111-121. (Pubitemid 40410022)
    • (2005) Gene , vol.348 , Issue.1-2 SUPPL. , pp. 111-121
    • Lagos, D.1    Ruiz, M.F.2    Sanchez, L.3    Komitopoulou, K.4
  • 23
    • 0021253525 scopus 로고
    • Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing
    • Henikoff S (1984) Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. Gene 28: 351-359.
    • (1984) Gene , vol.28 , pp. 351-359
    • Henikoff, S.1
  • 25
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 4876-4882. (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 27
    • 0042121115 scopus 로고    scopus 로고
    • DNA analysis servers: Plot.it, bend.it, model.it and IS
    • DOI 10.1093/nar/gkg559
    • Vlahoviček K, Kaján L, Pongor S (2003) DNA analysis servers: plot.it, bend.it, model.it and IS. Nucleic Acids Research 31: 3686-3687. (Pubitemid 37442223)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3686-3687
    • Vlahovicek, K.1    Kajan, L.2    Pongor, S.3
  • 28
    • 33746745365 scopus 로고    scopus 로고
    • Absolute and relative QPCR quantification of plasmid copy number in Escherichia coli
    • DOI 10.1016/j.jbiotec.2005.11.014, PII S0168165605007509
    • Lee C, Kim J, Shin SG, Hwang S (2006) Absolute and relative QPCR quantification of plasmid copy number in Escherichia coli. Journal of biotechnology 123: 273-280. (Pubitemid 44294582)
    • (2006) Journal of Biotechnology , vol.123 , Issue.3 , pp. 273-280
    • Lee, C.1    Kim, J.2    Shin, S.G.3    Hwang, S.4
  • 29
    • 33646340437 scopus 로고    scopus 로고
    • The copy-number of plasmids and other genetic elements can be determined by SYBR-Green-based quantitative real-time PCR
    • Providenti M a, O'Brien JM, Ewing RJ, Paterson ES, Smith ML (2006) The copy-number of plasmids and other genetic elements can be determined by SYBR-Green-based quantitative real-time PCR. Journal of microbiological methods 65: 476-487.
    • (2006) Journal of Microbiological Methods , vol.65 , pp. 476-487
    • Providenti, M.A.1    O'Brien, J.M.2    Ewing, R.J.3    Paterson, E.S.4    Smith, M.L.5
  • 30
    • 0142071135 scopus 로고    scopus 로고
    • A method for the absolute quantification of cDNA using real-time PCR
    • DOI 10.1016/S0022-1759(03)00223-0
    • Whelan JA, Russell NB, Whelan MA (2003) A method for the absolute quantification of cDNA using real-time PCR. Journal of immunological methods 278: 261-269. (Pubitemid 37281208)
    • (2003) Journal of Immunological Methods , vol.278 , Issue.1-2 , pp. 261-269
    • Whelan, J.A.1    Russell, N.B.2    Whelan, M.A.3
  • 31
    • 0030784674 scopus 로고    scopus 로고
    • Satellite DNA repeat sequence variation is low in three species of burying beetles in the genus Nicrophorus (Coleoptera: Silphidae)
    • King LM, Cummings MP (1997) Satellite DNA repeat sequence variation is low in three species of burying beetles in the genus Nicrophorus (Coleoptera: Silphidae). Molecular Biology and Evolution 14: 1088-1095. (Pubitemid 27463299)
    • (1997) Molecular Biology and Evolution , vol.14 , Issue.11 , pp. 1088-1095
    • King, L.M.1    Cummings, M.P.2
  • 32
    • 0031127039 scopus 로고    scopus 로고
    • Centromeres, CENP-B and Tigger too
    • DOI 10.1016/S0168-9525(97)01098-6, PII S0168952597010986
    • Kipling D, Warburton PE (1997) Centromeres, CENP-B and Tigger too. Trends in Genetics 13: 141-145. (Pubitemid 27191518)
    • (1997) Trends in Genetics , vol.13 , Issue.4 , pp. 141-145
    • Kipling, D.1    Warburton, P.E.2
  • 33
    • 0037019805 scopus 로고    scopus 로고
    • Comparative study of satellite DNA in ants of the Messor genus
    • Lorite P, Carrillo J a, Tinaut A, Palomeque T (2002) Comparative study of satellite DNA in ants of the Messor genus. Gene 297: 113-122.
    • (2002) Gene , vol.297 , pp. 113-122
    • Lorite, P.1    Carrillo, J.A.2    Tinaut, A.3    Palomeque, T.4
  • 36
    • 0019449795 scopus 로고
    • Transcripts from both strands of a satellite DNA occur on lampbrush chromosome loops of the newt Notophthalmus
    • Diaz MO, Barsacchi-Pilone G, Mahon KA, Gall JG (1981) Transcripts from both strands of a satellite DNA occur on lampbrush chromosome loops of the newt Notophthalmus. Cell 24: 649-659. (Pubitemid 11071304)
    • (1981) Cell , vol.24 , Issue.3 , pp. 649-659
    • Diaz, M.O.1    Barsacchi-Pilone, G.2    Mahon, K.A.3    Gall, J.G.4
  • 37
    • 34250736965 scopus 로고    scopus 로고
    • Transcription of the 1.688 satellite DNA family is under the control of RNA interference machinery in Drosophila melanogaster ovaries
    • DOI 10.1534/genetics.107.071720
    • Usakin L, Abad J, Vagin VV, De Pablos B, Villasante A, et al. (2007) Transcription of the 1.688 Satellite DNA Family Is Under the Control of RNA Interference Machinery in Drosophila melanogaster Ovaries. Genetics 176: 1343-1349. (Pubitemid 46961126)
    • (2007) Genetics , vol.176 , Issue.2 , pp. 1343-1349
    • Usakin, L.1    Abad, J.2    Vagin, V.V.3    De Pablos, B.4    Villasante, A.5    Gvozdev, V.A.6
  • 40
    • 0000400846 scopus 로고
    • Cytogenetic analysis of Malpighian tubule and salivary gland polytene chromosomes of Bactrocera oleae (Dacus oleae) (Diptera: Tephritidae)
    • Zambetaki A, Kleanthous K, Mavragani-Tsipidou P (1995) Cytogenetic analysis of Malpighian tubule and salivary gland polytene chromosomes of Bactrocera oleae (Dacus oleae) (Diptera: Tephritidae). Genome 38: 1070-1081.
    • (1995) Genome , vol.38 , pp. 1070-1081
    • Zambetaki, A.1    Kleanthous, K.2    Mavragani-Tsipidou, P.3
  • 41
    • 63149107981 scopus 로고    scopus 로고
    • Isolation and characterization of microsatellite markers from the olive fly, Bactrocera oleae, and their cross-species amplification in the Tephritidae family
    • Augustinos AA, Stratikopoulos EE, Drosopoulou E, Kakani EG, Mavragani-Tsipidou P, et al. (2008) Isolation and characterization of microsatellite markers from the olive fly, Bactrocera oleae, and their cross-species amplification in the Tephritidae family. BMC Genomics 9: 618.
    • (2008) BMC Genomics , vol.9 , pp. 618
    • Augustinos, A.A.1    Stratikopoulos, E.E.2    Drosopoulou, E.3    Kakani, E.G.4    Mavragani-Tsipidou, P.5
  • 42
    • 0033374292 scopus 로고    scopus 로고
    • The genome of the olive fruit fly Bactrocera oleae: Localization of molecular markers by in situ hybridization to the salivary gland polytene chromosomes
    • Zambetaki A, Zacharopoulou A, Scouras ZG, Mavragani-Tsipidou P (1999) The genome of the olive fruit fly Bactrocera oleae: localization of molecular markers by in situ hybridization to the salivary gland polytene chromosomes. Genome 42: 744-751. (Pubitemid 30061402)
    • (1999) Genome , vol.42 , Issue.4 , pp. 744-751
    • Zambetaki, A.1    Zacharopoulou, A.2    Scouras, Z.G.3    Mavragani-Tsipidou, P.4
  • 43
    • 65349149947 scopus 로고    scopus 로고
    • The heat shock 70 genes of the olive pest Bactrocera oleae: Genomic organization and molecular characterization of a transcription unit and its proximal promoter region
    • Drosopoulou E, Chrysopoulou A, Nikita V, Mavragani-Tsipidou P (2009) The heat shock 70 genes of the olive pest Bactrocera oleae: genomic organization and molecular characterization of a transcription unit and its proximal promoter region. Genome 52: 210-214.
    • (2009) Genome , vol.52 , pp. 210-214
    • Drosopoulou, E.1    Chrysopoulou, A.2    Nikita, V.3    Mavragani-Tsipidou, P.4
  • 44
    • 84866526299 scopus 로고    scopus 로고
    • Sex chromosomes and associated rDNA form a heterochromatic network in the polytene nuclei of Bactrocera oleae (Diptera: Tephritidae)
    • Drosopoulou E, Nakou I, Síchová J, Kubíč kovǎ S, Marec F, et al. (2012) Sex chromosomes and associated rDNA form a heterochromatic network in the polytene nuclei of Bactrocera oleae (Diptera: Tephritidae). Genetica 140: 169-180.
    • (2012) Genetica , vol.140 , pp. 169-180
    • Drosopoulou, E.1    Nakou, I.2    Síchová, J.3    Kubíč kovǎ, S.4    Marec, F.5
  • 46
    • 84864752667 scopus 로고    scopus 로고
    • Genome size estimation with quantitative real-time PCR in two Tephritidae species: Ceratitis capitata and Bactrocera oleae
    • Tsoumani KT, Mathiopoulos KD (2012) Genome size estimation with quantitative real-time PCR in two Tephritidae species: Ceratitis capitata and Bactrocera oleae. Journal of Applied Entomology 136: 626-631.
    • (2012) Journal of Applied Entomology , vol.136 , pp. 626-631
    • Tsoumani, K.T.1    Mathiopoulos, K.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.