-
1
-
-
0035694469
-
Acetylation of p53 activates transcription through recruitment of coactivators/histone acetyltransferases
-
Barlev, N.A., Liu, L., Chehab, N.H., Mansfield, K., Harris, K.G., Halazonetis, T.D. and Berger, S.L. (2001) Acetylation of p53 activates transcription through recruitment of coactivators/histone acetyltransferases. Mol. Cell, 8, 1243-1254.
-
(2001)
Mol. Cell
, vol.8
, pp. 1243-1254
-
-
Barlev, N.A.1
Liu, L.2
Chehab, N.H.3
Mansfield, K.4
Harris, K.G.5
Halazonetis, T.D.6
Berger, S.L.7
-
2
-
-
0037161744
-
HDAC6 is a microtubule-Associated deacetylase
-
Hubbert, C., Guardiola, A., Shao, R., Kawaguchi, Y., Ito, A., Nixon, A., Yoshida, M., Wang, X.F. and Yao, T.P. (2002) HDAC6 is a microtubule-Associated deacetylase. Nature, 417, 455-458.
-
(2002)
Nature
, vol.417
, pp. 455-458
-
-
Hubbert, C.1
Guardiola, A.2
Shao, R.3
Kawaguchi, Y.4
Ito, A.5
Nixon, A.6
Yoshida, M.7
Wang, X.F.8
Yao, T.P.9
-
3
-
-
0037087576
-
Dynamics of global histone acetylation and deacetylation in vivo: Rapid restoration of normal histone acetylation status upon removal of activators and repressors
-
Katan-Khaykovich, Y. and Struhl, K. (2002) Dynamics of global histone acetylation and deacetylation in vivo: rapid restoration of normal histone acetylation status upon removal of activators and repressors. Genes Dev., 16, 743-752.
-
(2002)
Genes Dev
, vol.16
, pp. 743-752
-
-
Katan-Khaykovich, Y.1
Struhl, K.2
-
4
-
-
0343484254
-
Regulation of E2F1 activity by acetylation
-
Martinez-Balbas, M.A., Bauer, U.M., Nielsen, S.J., Brehm, A. and Kouzarides, T. (2000) Regulation of E2F1 activity by acetylation. EMBO J., 19, 662-671.
-
(2000)
EMBO J
, vol.19
, pp. 662-671
-
-
Martinez-Balbas, M.A.1
Bauer, U.M.2
Nielsen, S.J.3
Brehm, A.4
Kouzarides, T.5
-
5
-
-
0034905085
-
Regulation of transcription factor YY1 by acetylation and deacetylation
-
Yao, Y.L., Yang, W.M. and Seto, E. (2001) Regulation of transcription factor YY1 by acetylation and deacetylation. Mol. Cell Biol., 21, 5979-5991.
-
(2001)
Mol. Cell Biol
, vol.21
, pp. 5979-5991
-
-
Yao, Y.L.1
Yang, W.M.2
Seto, E.3
-
6
-
-
0024286928
-
Histone acetylation in chicken erythrocytes: Rates of deacetylation in immature and mature red blood cells
-
Zhang, D.-E. and Nelson, D.A. (1988) Histone acetylation in chicken erythrocytes: rates of deacetylation in immature and mature red blood cells. Biochem. J., 250, 241-245.
-
(1988)
Biochem. J
, vol.250
, pp. 241-245
-
-
Zhang, D.-E.1
Nelson, D.A.2
-
7
-
-
0024286927
-
Histone acetylation in chicken erythrocytes: Rates of acetylation and evidence that histones in both active and potentially active chromatin are rapidly modified
-
Zhang, D.-E. and Nelson, D.A. (1988) Histone acetylation in chicken erythrocytes: rates of acetylation and evidence that histones in both active and potentially active chromatin are rapidly modified. Biochem. J., 250, 233-240.
-
(1988)
Biochem. J
, vol.250
, pp. 233-240
-
-
Zhang, D.-E.1
Nelson, D.A.2
-
8
-
-
46149123860
-
Zinc-induced formation of a coactivator complex containing the zinc-sensing transcription factor MTF-1 p300/ CBP, and Sp1
-
Li, Y., Kimura, T., Huyck, R.W., Laity, J.H. and Andrews, G.K. (2008) Zinc-induced formation of a coactivator complex containing the zinc-sensing transcription factor MTF-1, p300/ CBP, and Sp1. Mol. Cell Biol., 28, 4275-4284.
-
(2008)
Mol. Cell Biol
, vol.28
, pp. 4275-4284
-
-
Li, Y.1
Kimura, T.2
Huyck, R.W.3
Laity, J.H.4
Andrews, G.K.5
-
9
-
-
0033019307
-
The histone acetylase PCAF is a phorbol-esterinducible coactivator of the IRF family that confers enhanced interferon responsiveness
-
Masumi, A., Wang, I.M., Lefebvre, B., Yang, X.J., Nakatani, Y. and Ozato, K. (1999) The histone acetylase PCAF is a phorbol-esterinducible coactivator of the IRF family that confers enhanced interferon responsiveness. Mol. Cell Biol., 19, 1810-1820.
-
(1999)
Mol. Cell Biol
, vol.19
, pp. 1810-1820
-
-
Masumi, A.1
Wang, I.M.2
Lefebvre, B.3
Yang, X.J.4
Nakatani, Y.5
Ozato, K.6
-
10
-
-
2942620920
-
E2F-dependent histone acetylation and recruitment of the Tip60 acetyltransferase complex to chromatin in late G1
-
Taubert, S., Gorrini, C., Frank, S.R., Parisi, T., Fuchs, M., Chan, H.M., Livingston, D.M. and Amati, B. (2004) E2F-dependent histone acetylation and recruitment of the Tip60 acetyltransferase complex to chromatin in late G1. Mol. Cell Biol., 24, 4546-4556.
-
(2004)
Mol. Cell Biol
, vol.24
, pp. 4546-4556
-
-
Taubert, S.1
Gorrini, C.2
Frank, S.R.3
Parisi, T.4
Fuchs, M.5
Chan, H.M.6
Livingston, D.M.7
Amati, B.8
-
11
-
-
0037184021
-
The transcriptional repressor Sp3 is associated with CK2 phosphorylated histone deacetylase 2
-
Sun, J.M., Chen, H.Y., Moniwa, M., Litchfield, D.W., Seto, E. and Davie, J.R. (2002) The transcriptional repressor Sp3 is associated with CK2 phosphorylated histone deacetylase 2. J. Biol. Chem., 277, 35783-35786.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 35783-35786
-
-
Sun, J.M.1
Chen, H.Y.2
Moniwa, M.3
Litchfield, D.W.4
Seto, E.5
Davie, J.R.6
-
12
-
-
36448954666
-
Differential distribution of unmodified and phosphorylated histone deacetylase 2 in chromatin
-
Sun, J.M., Chen, H.Y. and Davie, J.R. (2007) Differential distribution of unmodified and phosphorylated histone deacetylase 2 in chromatin. J. Biol. Chem., 282, 33227-33236.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 33227-33236
-
-
Sun, J.M.1
Chen, H.Y.2
Davie, J.R.3
-
13
-
-
0037199944
-
Regulation of histone deacetylase 2 by protein kinase CK2
-
Tsai, S.C. and Seto, E. (2002) Regulation of histone deacetylase 2 by protein kinase CK2. J. Biol. Chem., 277, 31826-31833.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 31826-31833
-
-
Tsai, S.C.1
Seto, E.2
-
14
-
-
0035861594
-
Histone deacetylase 1 phosphorylation promotes enzymatic activity and complex formation
-
Pflum, M.K., Tong, J.K., Lane, W.S. and Schreiber, S.L. (2001) Histone deacetylase 1 phosphorylation promotes enzymatic activity and complex formation. J. Biol. Chem., 276, 47733-47741.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 47733-47741
-
-
Pflum, M.K.1
Tong, J.K.2
Lane, W.S.3
Schreiber, S.L.4
-
15
-
-
69449102464
-
Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes
-
Wang, Z., Zang, C., Cui, K., Schones, D.E., Barski, A., Peng, W. and Zhao, K. (2009) Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes. Cell, 138, 1019-1031.
-
(2009)
Cell
, vol.138
, pp. 1019-1031
-
-
Wang, Z.1
Zang, C.2
Cui, K.3
Schones, D.E.4
Barski, A.5
Peng, W.6
Zhao, K.7
-
16
-
-
79551650971
-
Histone deacetylase activity modulates alternative splicing
-
Hnilicova, J., Hozeifi, S., Duskova, E., Icha, J., Tomankova, T. and Stanek, D. (2011) Histone deacetylase activity modulates alternative splicing. PLoS One, 6, e16727.
-
(2011)
PLoS One
, vol.6
-
-
Hnilicova, J.1
Hozeifi, S.2
Duskova, E.3
Icha, J.4
Tomankova, T.5
Stanek, D.6
-
17
-
-
80052594686
-
Hu proteins regulate alternative splicing by inducing localized histone hyperacetylation in an RNA-dependent manner
-
Zhou, H.L., Hinman, M.N., Barron, V.A., Geng, C., Zhou, G., Luo, G., Siegel, R.E. and Lou, H. (2011) Hu proteins regulate alternative splicing by inducing localized histone hyperacetylation in an RNA-dependent manner. Proc. Natl Acad. Sci. USA, 108, E627-E635.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
-
-
Zhou, H.L.1
Hinman, M.N.2
Barron, V.A.3
Geng, C.4
Zhou, G.5
Luo, G.6
Siegel, R.E.7
Lou, H.8
-
18
-
-
56749164864
-
Expression of 24 426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines
-
Castle, J.C., Zhang, C., Shah, J.K., Kulkarni, A.V., Kalsotra, A., Cooper, T.A. and Johnson, J.M. (2008) Expression of 24, 426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines. Nat. Genet., 40, 1416-1425.
-
(2008)
Nat. Genet
, vol.40
, pp. 1416-1425
-
-
Castle, J.C.1
Zhang, C.2
Shah, J.K.3
Kulkarni, A.V.4
Kalsotra, A.5
Cooper, T.A.6
Johnson, J.M.7
-
19
-
-
58149492467
-
A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart
-
Kalsotra, A., Xiao, X., Ward, A.J., Castle, J.C., Johnson, J.M., Burge, C.B. and Cooper, T.A. (2008) A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart. Proc. Natl Acad. Sci. USA, 105, 20333-20338.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 20333-20338
-
-
Kalsotra, A.1
Xiao, X.2
Ward, A.J.3
Castle, J.C.4
Johnson, J.M.5
Burge, C.B.6
Cooper, T.A.7
-
20
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang, E.T., Sandberg, R., Luo, S., Khrebtukova, I., Zhang, L., Mayr, C., Kingsmore, S.F., Schroth, G.P. and Burge, C.B. (2008) Alternative isoform regulation in human tissue transcriptomes. Nature, 456, 470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmore, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
21
-
-
0141888375
-
A slow RNA polymerase II affects alternative splicing in vivo
-
de la Mata, M., Alonso, C.R., Kadener, S., Fededa, J.P., Blaustein, M., Pelisch, F., Cramer, P., Bentley, D. and Kornblihtt, A.R. (2003) A slow RNA polymerase II affects alternative splicing in vivo. Mol. Cell, 12, 525-532.
-
(2003)
Mol. Cell
, vol.12
, pp. 525-532
-
-
De La Mata, M.1
Alonso, C.R.2
Kadener, S.3
Fededa, J.P.4
Blaustein, M.5
Pelisch, F.6
Cramer, P.7
Bentley, D.8
Kornblihtt, A.R.9
-
22
-
-
79952266577
-
Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation
-
Ip, J.Y., Schmidt, D., Pan, Q., Ramani, A.K., Fraser, A.G., Odom, D.T. and Blencowe, B.J. (2011) Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation. Genome Res., 21, 390-401.
-
(2011)
Genome Res
, vol.21
, pp. 390-401
-
-
Ip, J.Y.1
Schmidt, D.2
Pan, Q.3
Ramani, A.K.4
Fraser, A.G.5
Odom, D.T.6
Blencowe, B.J.7
-
23
-
-
84869051680
-
Perturbation of chromatin structure globally affects localization and recruitment of splicing factors
-
Schor, I.E., Lleres, D., Risso, G.J., Pawellek, A., Ule, J., Lamond, A.I. and Kornblihtt, A.R. (2012) Perturbation of chromatin structure globally affects localization and recruitment of splicing factors. PLoS One, 7, e48084.
-
(2012)
PLoS One
, vol.7
-
-
Schor, I.E.1
Lleres, D.2
Risso, G.J.3
Pawellek, A.4
Ule, J.5
Lamond, A.I.6
Kornblihtt, A.R.7
-
24
-
-
77149175671
-
Regulation of alternative splicing by histone modifications
-
Luco, R.F., Pan, Q., Tominaga, K., Blencowe, B.J., Pereira-Smith, O.M. and Misteli, T. (2010) Regulation of alternative splicing by histone modifications. Science, 327, 996-1000.
-
(2010)
Science
, vol.327
, pp. 996-1000
-
-
Luco, R.F.1
Pan, Q.2
Tominaga, K.3
Blencowe, B.J.4
Pereira-Smith, O.M.5
Misteli, T.6
-
25
-
-
84893210532
-
Regulation of alternative splicing by local histone modifications: Potential roles for RNA-guided mechanisms
-
Zhou, H.L., Luo, G., Wise, J.A. and Lou, H. (2014) Regulation of alternative splicing by local histone modifications: potential roles for RNA-guided mechanisms. Nucleic Acids Res., 42, 701-713.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 701-713
-
-
Zhou, H.L.1
Luo, G.2
Wise, J.A.3
Lou, H.4
-
26
-
-
0026000952
-
DNA template effect on RNA splicing: Two copies of the same gene in the same nucleus are processed differently
-
Adami, G. and Babiss, L.E. (1991) DNA template effect on RNA splicing: two copies of the same gene in the same nucleus are processed differently. EMBO J., 10, 3457-3465.
-
(1991)
EMBO J
, vol.10
, pp. 3457-3465
-
-
Adami, G.1
Babiss, L.E.2
-
27
-
-
80052020631
-
Pre-mRNA splicing is a determinant of histone H3K36 methylation
-
Kim, S., Kim, H., Fong, N., Erickson, B. and Bentley, D.L. (2011) Pre-mRNA splicing is a determinant of histone H3K36 methylation. Proc. Natl Acad. Sci. USA, 108, 13564-13569.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 13564-13569
-
-
Kim, S.1
Kim, H.2
Fong, N.3
Erickson, B.4
Bentley, D.L.5
-
28
-
-
79952364016
-
Histone H3 lysine 9 trimethylation and HP1gamma favor inclusion of alternative exons
-
Saint-Andre, V., Batsche, E., Rachez, C. and Muchardt, C. (2011) Histone H3 lysine 9 trimethylation and HP1gamma favor inclusion of alternative exons. Nat. Struct. Mol. Biol., 18, 337-344.
-
(2011)
Nat. Struct. Mol. Biol
, vol.18
, pp. 337-344
-
-
Saint-Andre, V.1
Batsche, E.2
Rachez, C.3
Muchardt, C.4
-
29
-
-
63149192174
-
Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing
-
Schor, I.E., Rascovan, N., Pelisch, F., Allo, M. and Kornblihtt, A.R. (2009) Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing. Proc. Natl Acad. Sci. USA, 106, 4325-4330.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 4325-4330
-
-
Schor, I.E.1
Rascovan, N.2
Pelisch, F.3
Allo, M.4
Kornblihtt, A.R.5
-
30
-
-
36249027156
-
Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing
-
Sims, R.J. III, Millhouse, S., Chen, C.F., Lewis, B.A., Erdjument-Bromage, H., Tempst, P., Manley, J.L. and Reinberg, D. (2007) Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. Mol. Cell, 28, 665-676.
-
(2007)
Mol. Cell
, vol.28
, pp. 665-676
-
-
Sims III, R.J.1
Millhouse, S.2
Chen, C.F.3
Lewis, B.A.4
Erdjument-Bromage, H.5
Tempst, P.6
Manley, J.L.7
Reinberg, D.8
-
31
-
-
0035887299
-
Antagonistic effects of T-Ag and VP16 reveal a role for RNA pol II elongation on alternative splicing
-
Kadener, S., Cramer, P., Nogues, G., Cazalla, D., de la, M.M., Fededa, J.P., Werbajh, S.E., Srebrow, A. and Kornblihtt, A.R. (2001) Antagonistic effects of T-Ag and VP16 reveal a role for RNA pol II elongation on alternative splicing. EMBO J., 20, 5759-5768.
-
(2001)
EMBO J
, vol.20
, pp. 5759-5768
-
-
Kadener, S.1
Cramer, P.2
Nogues, G.3
Cazalla, D.4
De La, M.M.5
Fededa, J.P.6
Werbajh, S.E.7
Srebrow, A.8
Kornblihtt, A.R.9
-
32
-
-
61849139645
-
Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts
-
Sanford, J.R., Wang, X., Mort, M., Vanduyn, N., Cooper, D.N., Mooney, S.D., Edenberg, H.J. and Liu, Y. (2009) Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts. Genome Res., 19, 381-394.
-
(2009)
Genome Res
, vol.19
, pp. 381-394
-
-
Sanford, J.R.1
Wang, X.2
Mort, M.3
Vanduyn, N.4
Cooper, D.N.5
Mooney, S.D.6
Edenberg, H.J.7
Liu, Y.8
-
33
-
-
0034682837
-
MCL-1S, a splicing variant of the antiapoptotic BCL-2 family member MCL-1, encodes a proapoptotic protein possessing only the BH3 domain
-
Bae, J., Leo, C.P., Hsu, S.Y. and Hsueh, A.J. (2000) MCL-1S, a splicing variant of the antiapoptotic BCL-2 family member MCL-1, encodes a proapoptotic protein possessing only the BH3 domain. J. Biol. Chem., 275, 25255-25261.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 25255-25261
-
-
Bae, J.1
Leo, C.P.2
Hsu, S.Y.3
Hsueh, A.J.4
-
34
-
-
29144495943
-
Compositional characterization of the cytoskeleton of NK-like cells
-
Meng, X. and Wilkins, J.A. (2005) Compositional characterization of the cytoskeleton of NK-like cells. J. Proteome. Res., 4, 2081-2087.
-
(2005)
J. Proteome. Res
, vol.4
, pp. 2081-2087
-
-
Meng, X.1
Wilkins, J.A.2
-
35
-
-
77953710050
-
Promoter chromatin remodeling of immediate-early genes is mediated through H3 phosphorylation at either serine 28 or 10 by the MSK1 multi-protein complex
-
Drobic, B., Perez-Cadahia, B., Yu, J., Kung, S.K. and Davie, J.R. (2010) Promoter chromatin remodeling of immediate-early genes is mediated through H3 phosphorylation at either serine 28 or 10 by the MSK1 multi-protein complex. Nucleic Acids Res., 38, 3196-3208.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 3196-3208
-
-
Drobic, B.1
Perez-Cadahia, B.2
Yu, J.3
Kung, S.K.4
Davie, J.R.5
-
36
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang, Y., Liu, T., Meyer, C.A., Eeckhoute, J., Johnson, D.S., Bernstein, B.E., Nusbaum, C., Myers, R.M., Brown, M., Li, W. et al. (2008) Model-based analysis of ChIP-Seq (MACS). Genome Biol., 9, R137.
-
(2008)
Genome Biol
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
-
37
-
-
70349871718
-
CEAS: Cisregulatory element annotation system
-
Shin, H., Liu, T., Manrai, A.K. and Liu, X.S. (2009) CEAS: cisregulatory element annotation system. Bioinformatics, 25, 2605-2606.
-
(2009)
Bioinformatics
, vol.25
, pp. 2605-2606
-
-
Shin, H.1
Liu, T.2
Manrai, A.K.3
Liu, X.S.4
-
38
-
-
84878770165
-
Protein kinase CK2 regulates the dimerization of histone deacetylase (HDAC) 1 and HDAC2 during mitosis
-
Khan, D.H., He, S., Yu, J., Winter, S., Cao, W., Seiser, C. and Davie, J.R. (2013) Protein kinase CK2 regulates the dimerization of histone deacetylase (HDAC) 1 and HDAC2 during mitosis. J. Biol. Chem., 288, 16518-16528.
-
(2013)
J. Biol. Chem
, Issue.288
, pp. 16518-16528
-
-
Khan, D.H.1
He, S.2
Yu, J.3
Winter, S.4
Cao, W.5
Seiser, C.6
Davie, J.R.7
-
39
-
-
82255194389
-
The SRSF1 linker induces semi-conservative ESE binding by cooperating with the RRMs
-
Cho, S., Hoang, A., Chakrabarti, S., Huynh, N., Huang, D.B. and Ghosh, G. (2011) The SRSF1 linker induces semi-conservative ESE binding by cooperating with the RRMs. Nucleic Acids Res., 39, 9413-9421.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 9413-9421
-
-
Cho, S.1
Hoang, A.2
Chakrabarti, S.3
Huynh, N.4
Huang, D.B.5
Ghosh, G.6
-
40
-
-
66049098191
-
7SK snRNP/P-TEFb couples transcription elongation with alternative splicing and is essential for vertebrate development
-
Barboric, M., Lenasi, T., Chen, H., Johansen, E.B., Guo, S. and Peterlin, B.M. (2009) 7SK snRNP/P-TEFb couples transcription elongation with alternative splicing and is essential for vertebrate development. Proc. Natl Acad. Sci. USA, 106, 7798-7803.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 7798-7803
-
-
Barboric, M.1
Lenasi, T.2
Chen, H.3
Johansen, E.B.4
Guo, S.5
Peterlin, B.M.6
-
41
-
-
64749099643
-
SR protein family members display diverse activities in the formation of nascent and mature mRNPs in vivo
-
Sapra, A.K., Anko, M.L., Grishina, I., Lorenz, M., Pabis, M., Poser, I., Rollins, J., Weiland, E.M. and Neugebauer, K.M. (2009) SR protein family members display diverse activities in the formation of nascent and mature mRNPs in vivo. Mol. Cell, 34, 179-190.
-
(2009)
Mol. Cell
, vol.34
, pp. 179-190
-
-
Sapra, A.K.1
Anko, M.L.2
Grishina, I.3
Lorenz, M.4
Pabis, M.5
Poser, I.6
Rollins, J.7
Weiland, E.M.8
Neugebauer, K.M.9
-
42
-
-
79956113945
-
Epidermal growth factor regulates Mcl-1 expression through the MAPK-Elk-1 signalling pathway contributing to cell survival in breast cancer
-
Booy, E.P., Henson, E.S. and Gibson, S.B. (2011) Epidermal growth factor regulates Mcl-1 expression through the MAPK-Elk-1 signalling pathway contributing to cell survival in breast cancer. Oncogene, 30, 2367-2378.
-
(2011)
Oncogene
, vol.30
, pp. 2367-2378
-
-
Booy, E.P.1
Henson, E.S.2
Gibson, S.B.3
-
43
-
-
20444392755
-
Gene regulation in an MCF-7 cell line that naturally expresses an estrogen receptor unable to directly bind DNA
-
Pentecost, B.T., Bradley, L.M., Gierthy, J.F., Ding, Y. and Fasco, M.J. (2005) Gene regulation in an MCF-7 cell line that naturally expresses an estrogen receptor unable to directly bind DNA. Mol. Cell Endocrinol., 238, 9-25.
-
(2005)
Mol. Cell Endocrinol
, vol.238
, pp. 9-25
-
-
Pentecost, B.T.1
Bradley, L.M.2
Gierthy, J.F.3
Ding, Y.4
Fasco, M.J.5
-
44
-
-
33646390099
-
Chromatin modification of the trefoil factor 1 gene in human breast cancer cells by the Ras/mitogen-Activated protein kinase pathway
-
Espino, P.S., Li, L., He, S., Yu, J. and Davie, J.R. (2006) Chromatin modification of the trefoil factor 1 gene in human breast cancer cells by the Ras/mitogen-Activated protein kinase pathway. Cancer Res., 66, 4610-4616.
-
(2006)
Cancer Res
, vol.66
, pp. 4610-4616
-
-
Espino, P.S.1
Li, L.2
He, S.3
Yu, J.4
Davie, J.R.5
-
45
-
-
77955662560
-
An alternative splicing network links cell-cycle control to apoptosis
-
Moore, M.J., Wang, Q., Kennedy, C.J. and Silver, P.A. (2010) An alternative splicing network links cell-cycle control to apoptosis. Cell, 142, 625-636.
-
(2010)
Cell
, vol.142
, pp. 625-636
-
-
Moore, M.J.1
Wang, Q.2
Kennedy, C.J.3
Silver, P.A.4
-
46
-
-
79952396960
-
Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes
-
Bantscheff, M., Hopf, C., Savitski, M.M., Dittmann, A., Grandi, P., Michon, A.M., Schlegl, J., Abraham, Y., Becher, I., Bergamini, G. et al. (2011) Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes. Nat. Biotechnol., 29, 255-265.
-
(2011)
Nat. Biotechnol
, vol.29
, pp. 255-265
-
-
Bantscheff, M.1
Hopf, C.2
Savitski, M.M.3
Dittmann, A.4
Grandi, P.5
Michon, A.M.6
Schlegl, J.7
Abraham, Y.8
Becher, I.9
Bergamini, G.10
-
47
-
-
84870389262
-
The Warburg effect dictates the mechanism of butyrate-mediated histone acetylation and cell proliferation
-
Donohoe, D.R., Collins, L.B., Wali, A., Bigler, R., Sun, W. and Bultman, S.J. (2012) The Warburg effect dictates the mechanism of butyrate-mediated histone acetylation and cell proliferation. Mol. Cell, 48, 612-626.
-
(2012)
Mol. Cell
, vol.48
, pp. 612-626
-
-
Donohoe, D.R.1
Collins, L.B.2
Wali, A.3
Bigler, R.4
Sun, W.5
Bultman, S.J.6
-
48
-
-
84875778673
-
Microbial oncotarget: Bacterial-produced butyrate, chemoprevention and Warburg effect
-
Donohoe, D.R., Curry, K.P. and Bultman, S.J. (2013) Microbial oncotarget: bacterial-produced butyrate, chemoprevention and Warburg effect. Oncotarget., 4, 182-183.
-
(2013)
Oncotarget
, vol.4
, pp. 182-183
-
-
Donohoe, D.R.1
Curry, K.P.2
Bultman, S.J.3
-
49
-
-
68949212379
-
Lysine acetylation targets protein complexes and co-regulates major cellular functions
-
Choudhary, C., Kumar, C., Gnad, F., Nielsen, M.L., Rehman, M., Walther, T.C., Olsen, J.V. and Mann, M. (2009) Lysine acetylation targets protein complexes and co-regulates major cellular functions. Science, 325, 834-840.
-
(2009)
Science
, vol.325
, pp. 834-840
-
-
Choudhary, C.1
Kumar, C.2
Gnad, F.3
Nielsen, M.L.4
Rehman, M.5
Walther, T.C.6
Olsen, J.V.7
Mann, M.8
-
50
-
-
79957834859
-
Pause locally, splice globally
-
Carrillo Oesterreich, F., Bieberstein, N. and Neugebauer, K.M. (2011) Pause locally, splice globally. Trends Cell Biol., 21, 328-335.
-
(2011)
Trends Cell Biol
, vol.21
, pp. 328-335
-
-
Carrillo, O.F.1
Bieberstein, N.2
Neugebauer, K.M.3
-
51
-
-
0031841947
-
A human RNA polymerase II complex containing factors that modify chromatin structure
-
Cho, H., Orphanides, G., Sun, X., Yang, X.J., Ogryzko, V., Lees, E., Nakatani, Y. and Reinberg, D. (1998) A human RNA polymerase II complex containing factors that modify chromatin structure. Mol. Cell Biol., 18, 5355-5363.
-
(1998)
Mol. Cell Biol
, vol.18
, pp. 5355-5363
-
-
Cho, H.1
Orphanides, G.2
Sun, X.3
Yang, X.J.4
Ogryzko, V.5
Lees, E.6
Nakatani, Y.7
Reinberg, D.8
-
52
-
-
53549100755
-
The histone acetyltransferase PCAF associates with actin and hnRNP U for RNA polymerase II transcription
-
Obrdlik, A., Kukalev, A., Louvet, E., Farrants, A.K., Caputo, L. and Percipalle, P. (2008) The histone acetyltransferase PCAF associates with actin and hnRNP U for RNA polymerase II transcription. Mol. Cell Biol., 28, 6342-6357.
-
(2008)
Mol. Cell Biol
, vol.28
, pp. 6342-6357
-
-
Obrdlik, A.1
Kukalev, A.2
Louvet, E.3
Farrants, A.K.4
Caputo, L.5
Percipalle, P.6
-
53
-
-
58649113419
-
HBO1 HAT complexes target chromatin throughout gene coding regions via multiple PHD finger interactions with histone H3 tail
-
Saksouk, N., Avvakumov, N., Champagne, K.S., Hung, T., Doyon, Y., Cayrou, C., Paquet, E., Ullah, M., Landry, A.J., Cote, V. et al. (2009) HBO1 HAT complexes target chromatin throughout gene coding regions via multiple PHD finger interactions with histone H3 tail. Mol. Cell, 33, 257-265.
-
(2009)
Mol. Cell
, vol.33
, pp. 257-265
-
-
Saksouk, N.1
Avvakumov, N.2
Champagne, K.S.3
Hung, T.4
Doyon, Y.5
Cayrou, C.6
Paquet, E.7
Ullah, M.8
Landry, A.J.9
Cote, V.10
-
54
-
-
33947532026
-
Histone acetyltransferase complexes: One size doesnt fit all
-
Lee, K.K. and Workman, J.L. (2007) Histone acetyltransferase complexes: one size doesnt fit all. Nat. Rev. Mol. Cell Biol., 8, 284-295.
-
(2007)
Nat. Rev. Mol. Cell Biol
, vol.8
, pp. 284-295
-
-
Lee, K.K.1
Workman, J.L.2
-
55
-
-
42349095198
-
Downregulation of Mcl-1 potentiates HDACi-mediated apoptosis in leukemic cells
-
Inoue, S., Walewska, R., Dyer, M.J. and Cohen, G.M. (2008) Downregulation of Mcl-1 potentiates HDACi-mediated apoptosis in leukemic cells. Leukemia, 22, 819-825.
-
(2008)
Leukemia
, vol.22
, pp. 819-825
-
-
Inoue, S.1
Walewska, R.2
Dyer, M.J.3
Cohen, G.M.4
-
56
-
-
29144463657
-
Dynamic acetylation of all lysine 4-methylated histone H3 in the mouse nucleus: Analysis at c-fos and c-jun
-
Hazzalin, C.A. and Mahadevan, L.C. (2005) Dynamic acetylation of all lysine 4-methylated histone H3 in the mouse nucleus: analysis at c-fos and c-jun. PLoS. Biol., 3, e393.
-
(2005)
PLoS. Biol
, vol.3
-
-
Hazzalin, C.A.1
Mahadevan, L.C.2
-
57
-
-
69949132191
-
Chromatin organization marks exon-intron structure
-
Schwartz, S., Meshorer, E. and Ast, G. (2009) Chromatin organization marks exon-intron structure. Nat. Struct. Mol. Biol., 16, 990-995.
-
(2009)
Nat. Struct. Mol. Biol
, vol.16
, pp. 990-995
-
-
Schwartz, S.1
Meshorer, E.2
Ast, G.3
-
58
-
-
69949124307
-
Nucleosome positioning as a determinant of exon recognition
-
Tilgner, H., Nikolaou, C., Althammer, S., Sammeth, M., Beato, M., Valcarcel, J. and Guigo, R. (2009) Nucleosome positioning as a determinant of exon recognition. Nat. Struct. Mol. Biol., 16, 996-1001.
-
(2009)
Nat. Struct. Mol. Biol
, vol.16
, pp. 996-1001
-
-
Tilgner, H.1
Nikolaou, C.2
Althammer, S.3
Sammeth, M.4
Beato, M.5
Valcarcel, J.6
Guigo, R.7
-
59
-
-
0036674269
-
Large-scale proteomic analysis of the human spliceosome
-
Rappsilber, J., Ryder, U., Lamond, A.I. and Mann, M. (2002) Large-scale proteomic analysis of the human spliceosome. Genome Res., 12, 1231-1245.
-
(2002)
Genome Res
, vol.12
, pp. 1231-1245
-
-
Rappsilber, J.1
Ryder, U.2
Lamond, A.I.3
Mann, M.4
-
60
-
-
84877721757
-
SR proteins collaborate with 7SK and promoter-Associated nascent RNA to release paused polymerase
-
Ji, X., Zhou, Y., Pandit, S., Huang, J., Li, H., Lin, C.Y., Xiao, R., Burge, C.B. and Fu, X.D. (2013) SR proteins collaborate with 7SK and promoter-Associated nascent RNA to release paused polymerase. Cell, 153, 855-868.
-
(2013)
Cell
, vol.153
, pp. 855-868
-
-
Ji, X.1
Zhou, Y.2
Pandit, S.3
Huang, J.4
Li, H.5
Lin, C.Y.6
Xiao, R.7
Burge, C.B.8
Fu, X.D.9
-
61
-
-
60549110477
-
Chromatin binding of SRp20 and ASF/SF2 and dissociation from mitotic chromosomes is modulated by histone H3 serine 10 phosphorylation
-
Loomis, R.J., Naoe, Y., Parker, J.B., Savic, V., Bozovsky, M.R., Macfarlan, T., Manley, J.L. and Chakravarti, D. (2009) Chromatin binding of SRp20 and ASF/SF2 and dissociation from mitotic chromosomes is modulated by histone H3 serine 10 phosphorylation. Mol. Cell, 33, 450-461.
-
(2009)
Mol. Cell
, vol.33
, pp. 450-461
-
-
Loomis, R.J.1
Naoe, Y.2
Parker, J.B.3
Savic, V.4
Bozovsky, M.R.5
Macfarlan, T.6
Manley, J.L.7
Chakravarti, D.8
-
62
-
-
80054688742
-
Coding RNAs with a non-coding function: Maintenance of open chromatin structure
-
Caudron-Herger, M., Muller-Ott, K., Mallm, J.P., Marth, C., Schmidt, U., Fejes-Toth, K. and Rippe, K. (2011) Coding RNAs with a non-coding function: maintenance of open chromatin structure. Nucleus, 2, 410-424.
-
(2011)
Nucleus
, vol.2
, pp. 410-424
-
-
Caudron-Herger, M.1
Muller-Ott, K.2
Mallm, J.P.3
Marth, C.4
Schmidt, U.5
Fejes-Toth, K.6
Rippe, K.7
-
63
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
Khalil, A.M., Guttman, M., Huarte, M., Garber, M., Raj, A., Rivea, M.D., Thomas, K., Presser, A., Bernstein, B.E., van, O.A. et al. (2009) Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc. Natl Acad. Sci. USA, 106, 11667-11672.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Rivea, M.D.6
Thomas, K.7
Presser, A.8
Bernstein, B.E.9
Van, O.A.10
-
64
-
-
84870486010
-
Nuclear RNA sequencing of the mouse erythroid cell transcriptome
-
Mitchell, J.A., Clay, I., Umlauf, D., Chen, C.Y., Moir, C.A., Eskiw, C.H., Schoenfelder, S., Chakalova, L., Nagano, T. and Fraser, P. (2012) Nuclear RNA sequencing of the mouse erythroid cell transcriptome. PLoS One, 7, e49274.
-
(2012)
PLoS One
, vol.7
-
-
Mitchell, J.A.1
Clay, I.2
Umlauf, D.3
Chen, C.Y.4
Moir, C.A.5
Eskiw, C.H.6
Schoenfelder, S.7
Chakalova, L.8
Nagano, T.9
Fraser, P.10
-
65
-
-
43149109529
-
RNA is an integral component of chromatin that contributes to its structural organization
-
Rodriguez-Campos, A. and Azorin, F. (2007) RNA is an integral component of chromatin that contributes to its structural organization. PLoS One, 2, e1182.
-
(2007)
PLoS One
, vol.2
-
-
Rodriguez-Campos, A.1
Azorin, F.2
-
66
-
-
84861859517
-
ENCODE whole-genome data in the UCSC Genome Browser: Update 2012
-
Rosenbloom, K.R., Dreszer, T.R., Long, J.C., Malladi, V.S., Sloan, C.A., Raney, B.J., Cline, M.S., Karolchik, D., Barber, G.P., Clawson, H. et al. (2012) ENCODE whole-genome data in the UCSC Genome Browser: update 2012. Nucleic Acids Res., 40, D912-D917.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Rosenbloom, K.R.1
Dreszer, T.R.2
Long, J.C.3
Malladi, V.S.4
Sloan, C.A.5
Raney, B.J.6
Cline, M.S.7
Karolchik, D.8
Barber, G.P.9
Clawson, H.10
-
67
-
-
84867444899
-
ENCODE: The human encyclopaedia
-
Maher, B. (2012) ENCODE: the human encyclopaedia. Nature, 489, 46-48.
-
(2012)
Nature
, vol.489
, pp. 46-48
-
-
Maher, B.1
-
68
-
-
79960621198
-
Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation
-
Bian, C., Xu, C., Ruan, J., Lee, K.K., Burke, T.L., Tempel, W., Barsyte, D., Li, J., Wu, M., Zhou, B.O. et al. (2011) Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation. EMBO J., 30, 2829-2842.
-
(2011)
EMBO J
, vol.30
, pp. 2829-2842
-
-
Bian, C.1
Xu, C.2
Ruan, J.3
Lee, K.K.4
Burke, T.L.5
Tempel, W.6
Barsyte, D.7
Li, J.8
Wu, M.9
Zhou, B.O.10
-
69
-
-
84880730339
-
A dual role for SAGAassociated factor 29 (SGF29) in ER stress survival by coordination of both histone H3 acetylation and histone H3 lysine-4 trimethylation
-
Schram, A.W., Baas, R., Jansen, P.W., Riss, A., Tora, L., Vermeulen, M. and Timmers, H.T. (2013) A dual role for SAGAassociated factor 29 (SGF29) in ER stress survival by coordination of both histone H3 acetylation and histone H3 lysine-4 trimethylation. PLoS One, 8, e70035.
-
(2013)
PLoS One
, vol.8
-
-
Schram, A.W.1
Baas, R.2
Jansen, P.W.3
Riss, A.4
Tora, L.5
Vermeulen, M.6
Timmers, H.T.7
-
70
-
-
58649102691
-
ING4 mediates crosstalk between histone H3 K4 trimethylation and H3 acetylation to attenuate cellular transformation
-
Hung, T., Binda, O., Champagne, K.S., Kuo, A.J., Johnson, K., Chang, H.Y., Simon, M.D., Kutateladze, T.G. and Gozani, O. (2009) ING4 mediates crosstalk between histone H3 K4 trimethylation and H3 acetylation to attenuate cellular transformation. Mol. Cell, 33, 248-256.
-
(2009)
Mol. Cell
, vol.33
, pp. 248-256
-
-
Hung, T.1
Binda, O.2
Champagne, K.S.3
Kuo, A.J.4
Johnson, K.5
Chang, H.Y.6
Simon, M.D.7
Kutateladze, T.G.8
Gozani, O.9
-
71
-
-
0034461003
-
Effects of histone tail domains on the rate of transcriptional elongation through a nucleosome
-
Protacio, R.U., Li, G., Lowary, P.T. and Widom, J. (2000) Effects of histone tail domains on the rate of transcriptional elongation through a nucleosome. Mol. Cell Biol., 20, 8866-8878.
-
(2000)
Mol. Cell Biol
, vol.20
, pp. 8866-8878
-
-
Protacio, R.U.1
Li, G.2
Lowary, P.T.3
Widom, J.4
-
72
-
-
7344238492
-
Histone acetylation is required to maintain the unfolded nucleosome structure associated with transcribing DNA
-
Walia, H., Chen, H.Y., Sun, J.-M., Holth, L.T. and Davie, J.R. (1998) Histone acetylation is required to maintain the unfolded nucleosome structure associated with transcribing DNA. J. Biol. Chem., 273, 14516-14522.
-
(1998)
J. Biol. Chem
, vol.273
, pp. 14516-14522
-
-
Walia, H.1
Chen, H.Y.2
Sun, J.-M.3
Holth, L.T.4
Davie, J.R.5
-
73
-
-
84864553255
-
Pre-mRNA splicing: Role of epigenetics and implications in disease
-
Khan, D.H., Jahan, S. and Davie, J.R. (2012) Pre-mRNA splicing: role of epigenetics and implications in disease. Adv. Biol. Regul., 52, 377-388.
-
(2012)
Adv. Biol. Regul
, vol.52
, pp. 377-388
-
-
Khan, D.H.1
Jahan, S.2
Davie, J.R.3
-
74
-
-
84858329099
-
ATAC-king the complexity of SAGA during evolution
-
Spedale, G., Timmers, H.T. and Pijnappel, W.W. (2012) ATAC-king the complexity of SAGA during evolution. Genes Dev., 26, 527-541.
-
(2012)
Genes Dev
, vol.26
, pp. 527-541
-
-
Spedale, G.1
Timmers, H.T.2
Pijnappel, W.W.3
|