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Volumn 32, Issue 5, 2014, Pages 694-700

A communication network within the cytoplasmic domain of toll-like receptors has remained conserved during evolution

Author keywords

communication network; molecular dynamics; multiple sequence alignment; toll like receptors

Indexed keywords

TOLL LIKE RECEPTOR; TOLL LIKE RECEPTOR 4; IL1R1 PROTEIN, HUMAN; INTERLEUKIN 1 RECEPTOR TYPE I;

EID: 84896722900     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2013.787545     Document Type: Article
Times cited : (9)

References (31)
  • 2
    • 80052294520 scopus 로고    scopus 로고
    • In-silico approach to inhibition of signaling pathways of toll-like receptors 2 and 4 by ST2L
    • Basith, S., Manavalan, B., Govindaraj, R. G., &, Choi, S. (2011). In-silico approach to inhibition of signaling pathways of toll-like receptors 2 and 4 by ST2L. PLoS ONE, 6, e23989.
    • (2011) PLoS ONE , vol.6 , pp. 23989
    • Basith, S.1    Manavalan, B.2    Govindaraj, R.G.3    Choi, S.4
  • 3
    • 0029633168 scopus 로고
    • GROMACS: A message-passing parallel molecular dynamics implementation
    • Berendsen, H. (1995). GROMACS: A message-passing parallel molecular dynamics implementation. Computer Physics Communications, 91, 43-56.
    • (1995) Computer Physics Communications , vol.91 , pp. 43-56
    • Berendsen, H.1
  • 4
    • 79952643473 scopus 로고    scopus 로고
    • Structural and functional analysis of a plant resistance protein TIR domain reveals interfaces for self-association, signaling, and autoregulation
    • Bernoux, M., Ve, T., Williams, S., Warren, C., Hatters, D., Valkov, E.,., Dodds, P. N. (2011). Structural and functional analysis of a plant resistance protein TIR domain reveals interfaces for self-association, signaling, and autoregulation. Cell Host & Microbe, 9, 200-211.
    • (2011) Cell Host & Microbe , vol.9 , pp. 200-211
    • Bernoux, M.1    Ve, T.2    Williams, S.3    Warren, C.4    Hatters, D.5    Valkov, E.6    Dodds, P.N.7
  • 6
    • 3142654210 scopus 로고    scopus 로고
    • Inferences, questions and possibilities in toll-like receptor signalling
    • Beutler, B. (2004). Inferences, questions and possibilities in toll-like receptor signalling. Nature, 430, 257-263.
    • (2004) Nature , vol.430 , pp. 257-263
    • Beutler, B.1
  • 7
    • 0036453721 scopus 로고    scopus 로고
    • Evolution of the TIR, tolls and TLRs: Functional inferences from computational biology
    • Beutler, B., &, Rehli, M. (2002). Evolution of the TIR, tolls and TLRs: Functional inferences from computational biology. Current Topics in Microbiology and Immunology, 270, 1-21.
    • (2002) Current Topics in Microbiology and Immunology , vol.270 , pp. 1-21
    • Beutler, B.1    Rehli, M.2
  • 10
    • 84856710421 scopus 로고    scopus 로고
    • Identification of interaction sites for dimerization and adapter recruitment in Toll/Interleukin-1 Receptor (TIR) domain of Toll-like receptor 4
    • Bovijn, C., Ulrichts, P., De Smet, A. S., Catteeuw, D., Beyaert, R., Tavernier, J., &, Peelman, F. (2012). Identification of interaction sites for dimerization and adapter recruitment in Toll/Interleukin-1 Receptor (TIR) domain of Toll-like receptor 4. The Journal of Biological Chemistry, 287, 4088-4098.
    • (2012) The Journal of Biological Chemistry , vol.287 , pp. 4088-4098
    • Bovijn, C.1    Ulrichts, P.2    De Smet, A.S.3    Catteeuw, D.4    Beyaert, R.5    Tavernier, J.6    Peelman, F.7
  • 12
    • 16744364738 scopus 로고    scopus 로고
    • Structural complementarity of Toll/Interleukin-1 receptor domains in Toll-like Receptors and the adaptors mal and myd88
    • Dunne, A., Ejdebäck, M., Ludidi, P. L., ONeill, L. A. J., &, Gay, N. J. (2003). Structural complementarity of Toll/Interleukin-1 receptor domains in Toll-like Receptors and the adaptors mal and myd88. Journal of Biological Chemistry, 278, 41443-41451.
    • (2003) Journal of Biological Chemistry , vol.278 , pp. 41443-41451
    • Dunne, A.1    Ejdebäck, M.2    Ludidi, P.L.3    Oneill, L.A.J.4    Gay, N.J.5
  • 13
    • 33749574498 scopus 로고    scopus 로고
    • Structural and functional evidence for the role of the TLR2 DD Loop in TLR1/TLR2 heterodimerization and signaling
    • Gautam, J. K., Ashish, Comeau, L. D., Krueger, J. K., &, Smith, M. F. (2006). Structural and functional evidence for the role of the TLR2 DD Loop in TLR1/TLR2 heterodimerization and signaling. Journal of Biological Chemistry, 281, 30132-30142.
    • (2006) Journal of Biological Chemistry , vol.281 , pp. 30132-30142
    • Gautam, J.K.1    Ashish2    Comeau, L.D.3    Krueger, J.K.4    Smith, M.F.5
  • 14
    • 79952100792 scopus 로고    scopus 로고
    • What the myddosome structure tells us about the initiation of innate immunity
    • Gay, N. J., Gangloff, M., &, ONeill, L. A. J. (2011). What the myddosome structure tells us about the initiation of innate immunity. Trends in Immunology, 32, 104-109.
    • (2011) Trends in Immunology , vol.32 , pp. 104-109
    • Gay, N.J.1    Gangloff, M.2    Oneill, L.A.J.3
  • 15
    • 0035012982 scopus 로고    scopus 로고
    • STRAP: Editor for structural alignments of proteins
    • Gille, C., &, Frömmel, C. (2001). STRAP: Editor for structural alignments of proteins. Bioinformatics, 17, 377-378.
    • (2001) Bioinformatics , vol.17 , pp. 377-378
    • Gille, C.1    Frömmel, C.2
  • 17
    • 0242720597 scopus 로고    scopus 로고
    • Uncovering network systems within protein structures
    • Greene, L. H., &, Higman, V. A. (2003). Uncovering network systems within protein structures. Journal of Molecular Biology, 334, 781-791.
    • (2003) Journal of Molecular Biology , vol.334 , pp. 781-791
    • Greene, L.H.1    Higman, V.A.2
  • 18
    • 3843055773 scopus 로고    scopus 로고
    • Crystal structure of the Toll/Interleukin-1 receptor domain of human IL-1RAPL
    • Khan, J. A., Brint, E. K., ONeill, L. A. J., &, Tong, L. (2004). Crystal structure of the Toll/Interleukin-1 receptor domain of human IL-1RAPL. Journal of Biological Chemistry, 279, 31664-31670.
    • (2004) Journal of Biological Chemistry , vol.279 , pp. 31664-31670
    • Khan, J.A.1    Brint, E.K.2    Oneill, L.A.J.3    Tong, L.4
  • 19
    • 0029881007 scopus 로고    scopus 로고
    • MOLMOL: A program for display and analysis of macromolecular structures
    • Koradi, R., Billeter, M., &, Wüthrich, K. (1996). MOLMOL: A program for display and analysis of macromolecular structures. Journal of Molecular Graphics, 14, 51-55.
    • (1996) Journal of Molecular Graphics , vol.14 , pp. 51-55
    • Koradi, R.1    Billeter, M.2    Wüthrich, K.3
  • 21
    • 40749097627 scopus 로고    scopus 로고
    • A dimer of the Toll-Like Receptor 4 cytoplasmic domain provides a specific scaffold for the recruitment of signalling adaptor proteins
    • Núñez Miguel, R., Wong, J., Westoll, J. F., Brooks, H. J., ONeill, L. A. J., Gay, N. J.,., Monie, T. P. (2007). A dimer of the Toll-Like Receptor 4 cytoplasmic domain provides a specific scaffold for the recruitment of signalling adaptor proteins. PLoS ONE, 2, e788.
    • (2007) PLoS ONE , vol.2 , pp. 788
    • Núñez Miguel, R.1    Wong, J.2    Westoll, J.F.3    Brooks, H.J.4    Oneill, L.A.J.5    Gay, N.J.6    Monie, T.P.7
  • 22
    • 45549086115 scopus 로고    scopus 로고
    • The crystal structure of the human toll-like receptor 10 cytoplasmic domain reveals a putative signaling dimer
    • Nyman, T., Stenmark, P., Flodin, S., Johansson, I., Hammarstram, M., &, Nordlund, P. (2008). The crystal structure of the human toll-like receptor 10 cytoplasmic domain reveals a putative signaling dimer. Journal of Biological Chemistry, 283, 11861-11865.
    • (2008) Journal of Biological Chemistry , vol.283 , pp. 11861-11865
    • Nyman, T.1    Stenmark, P.2    Flodin, S.3    Johansson, I.4    Hammarstram, M.5    Nordlund, P.6
  • 24
    • 0037379201 scopus 로고    scopus 로고
    • Common interaction surfaces of the toll-like receptor 4 cytoplasmic domain stimulate multiple nuclear targets
    • Ronni, T., Agarwal, V., Haykinson, M., Haberland, M. E., Cheng, G., &, Smale, S. T. (2003). Common interaction surfaces of the toll-like receptor 4 cytoplasmic domain stimulate multiple nuclear targets. Molecular and Cellular Biology, 23, 2543-2555.
    • (2003) Molecular and Cellular Biology , vol.23 , pp. 2543-2555
    • Ronni, T.1    Agarwal, V.2    Haykinson, M.3    Haberland, M.E.4    Cheng, G.5    Smale, S.T.6
  • 25
    • 0042622380 scopus 로고    scopus 로고
    • SWISS-MODEL: An automated protein homology-modeling server
    • Schwede, T., Kopp, Jr, Guex, N., &, Peitsch, M. C. (2003). SWISS-MODEL: An automated protein homology-modeling server. Nucleic Acids Research, 31, 3381-3385.
    • (2003) Nucleic Acids Research , vol.31 , pp. 3381-3385
    • Schwede, T.1    Kopp, J.2    Guex, N.3    Peitsch, M.C.4
  • 26
    • 77953325845 scopus 로고    scopus 로고
    • Ligand docking and binding site analysis with PyMOL and Autodock/Vina
    • Seeliger, D., & De Groot, B. L. (2010). Ligand docking and binding site analysis with PyMOL and Autodock/Vina. Journal of Computer Aided Molecular Design, 24, 417-422.
    • (2010) Journal of Computer Aided Molecular Design , vol.24 , pp. 417-422
    • Seeliger, D.1    De Groot, B.L.2
  • 28
    • 12444341944 scopus 로고    scopus 로고
    • Toll-like receptors in innate immunity
    • Takeda, K., &, Akira, S. (2005). Toll-like receptors in innate immunity. International Immunology, 17 (1), 1-14.
    • (2005) International Immunology , vol.17 , Issue.1 , pp. 1-14
    • Takeda, K.1    Akira, S.2
  • 29
    • 79955030120 scopus 로고    scopus 로고
    • Targeting TLR4 Signaling by TLR4 Toll/IL-1 receptor domain-derived decoy peptides: Identification of the TLR4 Toll/IL-1 receptor domain dimerization interface
    • Toshchakov, V. Y., Szmacinski, H., Couture, L. A., Lakowicz, J. R., &, Vogel, S. N. (2011). Targeting TLR4 Signaling by TLR4 Toll/IL-1 receptor domain-derived decoy peptides: Identification of the TLR4 Toll/IL-1 receptor domain dimerization interface. The Journal of Immunology, 186, 4819-4827.
    • (2011) The Journal of Immunology , vol.186 , pp. 4819-4827
    • Toshchakov, V.Y.1    Szmacinski, H.2    Couture, L.A.3    Lakowicz, J.R.4    Vogel, S.N.5
  • 30
    • 65449188232 scopus 로고    scopus 로고
    • Jalview Version 2-A multiple sequence alignment editor and analysis workbench
    • Waterhouse, A. M., Procter, J. B., Martin, D. M. A., Clamp, M., &, Barton, G. J. (2009). Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics, 25, 1189-1191.
    • (2009) Bioinformatics , vol.25 , pp. 1189-1191
    • Waterhouse, A.M.1    Procter, J.B.2    Martin, D.M.A.3    Clamp, M.4    Barton, G.J.5
  • 31
    • 0034597766 scopus 로고    scopus 로고
    • Structural basis for signal transduction by the Toll/interleukin-1 receptor domains
    • Xu, Y., Tao, X., Shen, B., Horng, T., Medzhitov, R., Manley, J. L., &, Tong, L. (2000). Structural basis for signal transduction by the Toll/interleukin-1 receptor domains. Nature, 408, 111-115.
    • (2000) Nature , vol.408 , pp. 111-115
    • Xu, Y.1    Tao, X.2    Shen, B.3    Horng, T.4    Medzhitov, R.5    Manley, J.L.6    Tong, L.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.