-
1
-
-
24644490119
-
Comparative analysis of amino acid distributions in integral membrane proteins from 107 genomes
-
Nilsson J, Persson B, von Heijne G, (2005) Comparative analysis of amino acid distributions in integral membrane proteins from 107 genomes. Proteins 60: 606-616.
-
(2005)
Proteins
, vol.60
, pp. 606-616
-
-
Nilsson, J.1
Persson, B.2
von Heijne, G.3
-
2
-
-
0033942874
-
Structure and function of bacterial outer membrane proteins: barrels in a nutshell
-
Koebnik R, Locher KP, van Gelder P, (2000) Structure and function of bacterial outer membrane proteins: barrels in a nutshell. Molecular Microbiology 37: 239-253.
-
(2000)
Molecular Microbiology
, vol.37
, pp. 239-253
-
-
Koebnik, R.1
Locher, K.P.2
van Gelder, P.3
-
3
-
-
0035782884
-
Preventing drug access to targets: cell surface permeability barriers and active efflux in bacteria
-
Nikaido H, (2001) Preventing drug access to targets: cell surface permeability barriers and active efflux in bacteria. Seminars in Cell & Developmental Biology 12: 215-223.
-
(2001)
Seminars in Cell & Developmental Biology
, vol.12
, pp. 215-223
-
-
Nikaido, H.1
-
5
-
-
79951773699
-
The structural orientation of antibody layers bound to engineered biosensor surfaces
-
Le Brun AP, Holt SA, Shah DSH, Majkrzak CF, Lakey JH, (2011) The structural orientation of antibody layers bound to engineered biosensor surfaces. Biomaterials 32: 3303-3311.
-
(2011)
Biomaterials
, vol.32
, pp. 3303-3311
-
-
Le Brun, A.P.1
Holt, S.A.2
Shah, D.S.H.3
Majkrzak, C.F.4
Lakey, J.H.5
-
6
-
-
84864880937
-
Characterization of the motion of membrane proteins using high-speed atomic force microscopy
-
Casuso I, Khao J, Chami M, Paul-Gilloteaux P, Husain M, et al. (2012) Characterization of the motion of membrane proteins using high-speed atomic force microscopy. Nature Nanotechnology 7: 525-529.
-
(2012)
Nature Nanotechnology
, vol.7
, pp. 525-529
-
-
Casuso, I.1
Khao, J.2
Chami, M.3
Paul-Gilloteaux, P.4
Husain, M.5
-
7
-
-
34548256844
-
Anatomy and dynamics of a supramolecular membrane protein cluster
-
Sieber JJ, Willig KI, Kutzner C, Gerding-Reimers C, Harke B, et al. (2007) Anatomy and dynamics of a supramolecular membrane protein cluster. Science 317: 1072-1076.
-
(2007)
Science
, vol.317
, pp. 1072-1076
-
-
Sieber, J.J.1
Willig, K.I.2
Kutzner, C.3
Gerding-Reimers, C.4
Harke, B.5
-
8
-
-
74849118341
-
Lipid Rafts As a Membrane-Organizing Principle
-
Lingwood D, Simons K, (2009) Lipid Rafts As a Membrane-Organizing Principle. Science 327: 46-50.
-
(2009)
Science
, vol.327
, pp. 46-50
-
-
Lingwood, D.1
Simons, K.2
-
9
-
-
0033956407
-
Visualization of phospholipid domains in Escherichia coli by using the cardiolipin-specific fluorescent dye 10-N-nonyl acridine orange
-
Mileykovskaya E, Dowhan W, (2000) Visualization of phospholipid domains in Escherichia coli by using the cardiolipin-specific fluorescent dye 10-N-nonyl acridine orange. Journal of bacteriology 182: 1172-1175.
-
(2000)
Journal of Bacteriology
, vol.182
, pp. 1172-1175
-
-
Mileykovskaya, E.1
Dowhan, W.2
-
10
-
-
15744398051
-
Role of membrane lipids in bacterial division-site selection
-
Mileykovskaya E, Dowhan W, (2005) Role of membrane lipids in bacterial division-site selection. Current Opinion in Microbiology 8: 135-142.
-
(2005)
Current Opinion in Microbiology
, vol.8
, pp. 135-142
-
-
Mileykovskaya, E.1
Dowhan, W.2
-
11
-
-
33747591249
-
Dynamics in the plasma membrane: how to combine fluidity and order
-
Marguet D, Lenne PF, Rigneault H, He HT, (2006) Dynamics in the plasma membrane: how to combine fluidity and order. The EMBO journal 25: 3446-3457.
-
(2006)
The EMBO Journal
, vol.25
, pp. 3446-3457
-
-
Marguet, D.1
Lenne, P.F.2
Rigneault, H.3
He, H.T.4
-
12
-
-
78650215348
-
Mobility of BtuB and OmpF in the Escherichia coli outer membrane: implications for dynamic formation of a translocon complex
-
Spector J, Zakharov S, Lill Y, Sharma O, Cramer WA, et al. (2010) Mobility of BtuB and OmpF in the Escherichia coli outer membrane: implications for dynamic formation of a translocon complex. Biophysical Journal 99: 3880-3886.
-
(2010)
Biophysical Journal
, vol.99
, pp. 3880-3886
-
-
Spector, J.1
Zakharov, S.2
Lill, Y.3
Sharma, O.4
Cramer, W.A.5
-
13
-
-
84865300840
-
Electron crystallography-the waking beauty of structural biology
-
Pope CR, Unger VM, (2012) Electron crystallography-the waking beauty of structural biology. Current Opinion in Structural Biology 22: 514-519.
-
(2012)
Current Opinion in Structural Biology
, vol.22
, pp. 514-519
-
-
Pope, C.R.1
Unger, V.M.2
-
15
-
-
56249084895
-
Outer membrane phospholipase A dimer stability does not correlate to occluded surface area
-
Ebbie Tan AZ, Fleming KG, (2008) Outer membrane phospholipase A dimer stability does not correlate to occluded surface area. Biochemistry 47: 12095-12103.
-
(2008)
Biochemistry
, vol.47
, pp. 12095-12103
-
-
Ebbie Tan, A.Z.1
Fleming, K.G.2
-
16
-
-
84866491068
-
Robust driving forces for transmembrane helix packing
-
Benjamini A, Smit B, (2012) Robust driving forces for transmembrane helix packing. Biophysical Journal 103: 1227-1235.
-
(2012)
Biophysical Journal
, vol.103
, pp. 1227-1235
-
-
Benjamini, A.1
Smit, B.2
-
17
-
-
70449533002
-
NanC crystal structure, a model for outer-membrane channels of the acidic sugar-specific KdgM porin family
-
Wirth C, Condemine G, Boiteux C, Bernèche S, Schirmer T, et al. (2009) NanC crystal structure, a model for outer-membrane channels of the acidic sugar-specific KdgM porin family. Journal of Molecular Biology 394: 718-731.
-
(2009)
Journal of Molecular Biology
, vol.394
, pp. 718-731
-
-
Wirth, C.1
Condemine, G.2
Boiteux, C.3
Bernèche, S.4
Schirmer, T.5
-
18
-
-
84857358538
-
Single-channel measurements of an N-acetylneuraminic acid-inducible outer membrane channel in Escherichia coli
-
Giri J, Tang JM, Wirth C, Peneff CM, Eisenberg B, (2012) Single-channel measurements of an N-acetylneuraminic acid-inducible outer membrane channel in Escherichia coli. European Biophysics Journal 41: 259-271.
-
(2012)
European Biophysics Journal
, vol.41
, pp. 259-271
-
-
Giri, J.1
Tang, J.M.2
Wirth, C.3
Peneff, C.M.4
Eisenberg, B.5
-
19
-
-
36148976089
-
Projection maps of three members of the KdgM outer membrane protein family
-
Signorell GA, Chami M, Condemine G, Schenk AD, Philippsen A, et al. (2007) Projection maps of three members of the KdgM outer membrane protein family. Journal of Structural Biology 160: 395-403.
-
(2007)
Journal of Structural Biology
, vol.160
, pp. 395-403
-
-
Signorell, G.A.1
Chami, M.2
Condemine, G.3
Schenk, A.D.4
Philippsen, A.5
-
21
-
-
0041914460
-
Determination of membrane protein stability via thermodynamic coupling of folding to thiol-disulfide interchange
-
Cristian L, Lear JD, DeGrado WF, (2003) Determination of membrane protein stability via thermodynamic coupling of folding to thiol-disulfide interchange. Protein Science 12: 1732-1740.
-
(2003)
Protein Science
, vol.12
, pp. 1732-1740
-
-
Cristian, L.1
Lear, J.D.2
DeGrado, W.F.3
-
22
-
-
6344236852
-
Complex interactions at the helix-helix interface stabilize the glycophorin A transmembrane dimer
-
Doura AK, Fleming KG, (2004) Complex interactions at the helix-helix interface stabilize the glycophorin A transmembrane dimer. Journal of Molecular Biology 343: 1487-1497.
-
(2004)
Journal of Molecular Biology
, vol.343
, pp. 1487-1497
-
-
Doura, A.K.1
Fleming, K.G.2
-
23
-
-
33645109087
-
Energetics of outer membrane phospholipase A (OMPLA) dimerization
-
Stanley AM, Chuawong P, Hendrickson TL, Fleming KG, (2006) Energetics of outer membrane phospholipase A (OMPLA) dimerization. Journal of Molecular Biology 358: 120-131.
-
(2006)
Journal of Molecular Biology
, vol.358
, pp. 120-131
-
-
Stanley, A.M.1
Chuawong, P.2
Hendrickson, T.L.3
Fleming, K.G.4
-
24
-
-
33846390316
-
Dimerization of the erythropoietin receptor transmembrane domain in micelles
-
Ebie AZ, Fleming KG, (2007) Dimerization of the erythropoietin receptor transmembrane domain in micelles. Journal of Molecular Biology 366: 517-524.
-
(2007)
Journal of Molecular Biology
, vol.366
, pp. 517-524
-
-
Ebie, A.Z.1
Fleming, K.G.2
-
26
-
-
79954524314
-
From coarse grained to atomistic: a serial multiscale approach to membrane protein simulations
-
Stansfeld PJ, Sansom MSP, (2011) From coarse grained to atomistic: a serial multiscale approach to membrane protein simulations. Journal of Chemical Theory and Computation 7: 1157-1166.
-
(2011)
Journal of Chemical Theory and Computation
, vol.7
, pp. 1157-1166
-
-
Stansfeld, P.J.1
Sansom, M.S.P.2
-
27
-
-
77954354757
-
Lipid-modulated sequence-specific association of glycophorin A in membranes
-
Janosi L, Prakash A, Doxastakis M, (2010) Lipid-modulated sequence-specific association of glycophorin A in membranes. Biophysical Journal 99: 284-292.
-
(2010)
Biophysical Journal
, vol.99
, pp. 284-292
-
-
Janosi, L.1
Prakash, A.2
Doxastakis, M.3
-
28
-
-
46049097169
-
Modeling dimerizations of transmembrane proteins using Brownian dynamics simulations
-
Cui M, Mezei M, Osman R, (2008) Modeling dimerizations of transmembrane proteins using Brownian dynamics simulations. Journal of computer-aided molecular design 22: 553-561.
-
(2008)
Journal of Computer-Aided Molecular Design
, vol.22
, pp. 553-561
-
-
Cui, M.1
Mezei, M.2
Osman, R.3
-
29
-
-
49449113010
-
The MARTINI coarse-grained force field: extension to proteins
-
Monticelli L, Kandasamy SK, Periole X, Larson RG, Tieleman DP, et al. (2008) The MARTINI coarse-grained force field: extension to proteins. Journal of Chemical Theory and Computation 4: 819-834.
-
(2008)
Journal of Chemical Theory and Computation
, vol.4
, pp. 819-834
-
-
Monticelli, L.1
Kandasamy, S.K.2
Periole, X.3
Larson, R.G.4
Tieleman, D.P.5
-
30
-
-
77957901688
-
Lipid-mediated interactions tune the association of glycophorin A helix and its disruptive mutants in membranes
-
Sengupta D, Marrink SJ, (2010) Lipid-mediated interactions tune the association of glycophorin A helix and its disruptive mutants in membranes. Physical Chemistry Chemical Physics 12: 12987-12996.
-
(2010)
Physical Chemistry Chemical Physics
, vol.12
, pp. 12987-12996
-
-
Sengupta, D.1
Marrink, S.J.2
-
31
-
-
34548146523
-
G protein-coupled receptors self-assemble in dynamics simulations of model bilayers
-
Periole X, Huber T, Marrink SJ, Sakmar TP, (2007) G protein-coupled receptors self-assemble in dynamics simulations of model bilayers. Journal of the American Chemical Society 129: 10126-10132.
-
(2007)
Journal of the American Chemical Society
, vol.129
, pp. 10126-10132
-
-
Periole, X.1
Huber, T.2
Marrink, S.J.3
Sakmar, T.P.4
-
32
-
-
0029633155
-
The calculation of the potential of mean force using computer simulations
-
Roux B, (1995) The calculation of the potential of mean force using computer simulations. Computer Physics Communications 91: 275-282.
-
(1995)
Computer Physics Communications
, vol.91
, pp. 275-282
-
-
Roux, B.1
-
33
-
-
70350223829
-
Towards an understanding of membrane-mediated protein-protein interactions
-
Yiannourakou M, Marsella L, de Meyer FJM, Smit B, (2010) Towards an understanding of membrane-mediated protein-protein interactions. Faraday Discussions 144: 359-367.
-
(2010)
Faraday Discussions
, vol.144
, pp. 359-367
-
-
Yiannourakou, M.1
Marsella, L.2
de Meyer, F.J.M.3
Smit, B.4
-
34
-
-
79958706179
-
Leukocyte integrin αLβ 2 transmembrane association dynamics revealed by coarse-grained molecular dynamics simulations
-
Chng CP, Tan SM, (2011) Leukocyte integrin αLβ 2 transmembrane association dynamics revealed by coarse-grained molecular dynamics simulations. Proteins 79: 2203-2213.
-
(2011)
Proteins
, vol.79
, pp. 2203-2213
-
-
Chng, C.P.1
Tan, S.M.2
-
36
-
-
50349098382
-
Molecular simulations of lipid-mediated protein-protein interactions
-
de Meyer FJM, Venturoli M, Smit B, (2008) Molecular simulations of lipid-mediated protein-protein interactions. Biophysical Journal 95: 1851-1865.
-
(2008)
Biophysical Journal
, vol.95
, pp. 1851-1865
-
-
de Meyer, F.J.M.1
Venturoli, M.2
Smit, B.3
-
37
-
-
0017304621
-
Lipid-mediated protein interaction in membranes
-
Marcelja S, (1976) Lipid-mediated protein interaction in membranes. Biochimica et biophysica acta 455: 1-7.
-
(1976)
Biochimica Et Biophysica Acta
, vol.455
, pp. 1-7
-
-
Marcelja, S.1
-
38
-
-
0031740415
-
Hydrophobic mismatch between proteins and lipids in membranes
-
Killian JA, (1998) Hydrophobic mismatch between proteins and lipids in membranes. Biochimica et biophysica acta 1376: 401-415.
-
(1998)
Biochimica Et Biophysica Acta
, vol.1376
, pp. 401-415
-
-
Killian, J.A.1
-
39
-
-
0034950310
-
Lipid-mediated interactions between intrinsic membrane proteins: Dependence on protein size and lipid composition
-
Lagüe P, Zuckermann MJ, Roux B, (2001) Lipid-mediated interactions between intrinsic membrane proteins: Dependence on protein size and lipid composition. Biophysical Journal 81: 276-284.
-
(2001)
Biophysical Journal
, vol.81
, pp. 276-284
-
-
Lagüe, P.1
Zuckermann, M.J.2
Roux, B.3
-
40
-
-
80052494607
-
Aggregation of model membrane proteins, modulated by hydrophobic mismatch, membrane curvature, and protein class
-
Parton DL, Klingelhoefer JW, Sansom MSP, (2011) Aggregation of model membrane proteins, modulated by hydrophobic mismatch, membrane curvature, and protein class. Biophysical Journal 101: 691-699.
-
(2011)
Biophysical Journal
, vol.101
, pp. 691-699
-
-
Parton, D.L.1
Klingelhoefer, J.W.2
Sansom, M.S.P.3
-
41
-
-
53249150686
-
Coarse-grained molecular dynamics simulations of the energetics of helix insertion into a lipid bilayer
-
Bond PJ, Wee CL, Sansom MSP, (2008) Coarse-grained molecular dynamics simulations of the energetics of helix insertion into a lipid bilayer. Biochemistry 47: 11321-11331.
-
(2008)
Biochemistry
, vol.47
, pp. 11321-11331
-
-
Bond, P.J.1
Wee, C.L.2
Sansom, M.S.P.3
-
42
-
-
77953101439
-
Membrane proteins diffuse as dynamic complexes with lipids
-
Niemelä PS, Miettinen MS, Monticelli L, Hammaren H, Bjelkmar P, et al. (2010) Membrane proteins diffuse as dynamic complexes with lipids. Journal of the American Chemical Society 132: 7574-7575.
-
(2010)
Journal of the American Chemical Society
, vol.132
, pp. 7574-7575
-
-
Niemelä, P.S.1
Miettinen, M.S.2
Monticelli, L.3
Hammaren, H.4
Bjelkmar, P.5
-
43
-
-
84857648415
-
Transmembrane helices can induce domain formation in crowded model membranes
-
Domański J, Marrink SJ, Schäfer LV, (2012) Transmembrane helices can induce domain formation in crowded model membranes. Biochimica et biophysica acta 1818: 984-994.
-
(2012)
Biochimica Et Biophysica Acta
, vol.1818
, pp. 984-994
-
-
Domański, J.1
Marrink, S.J.2
Schäfer, L.V.3
-
44
-
-
84863535732
-
Structural determinants of the supramolecular organization of G protein-coupled receptors in bilayers
-
Periole X, Knepp AM, Sakmar TP, Marrink SJ, Huber T, (2012) Structural determinants of the supramolecular organization of G protein-coupled receptors in bilayers. Journal of the American Chemical Society 134: 10959-10965.
-
(2012)
Journal of the American Chemical Society
, vol.134
, pp. 10959-10965
-
-
Periole, X.1
Knepp, A.M.2
Sakmar, T.P.3
Marrink, S.J.4
Huber, T.5
-
45
-
-
78649833557
-
Molecular simulation of the effect of cholesterol on lipid-mediated protein-protein interactions
-
de Meyer FJM, Rodgers JM, Willems TF, Smit B, (2010) Molecular simulation of the effect of cholesterol on lipid-mediated protein-protein interactions. Biophysical Journal 99: 3629-3638.
-
(2010)
Biophysical Journal
, vol.99
, pp. 3629-3638
-
-
de Meyer, F.J.M.1
Rodgers, J.M.2
Willems, T.F.3
Smit, B.4
-
46
-
-
0344687314
-
Side-chain contributions to membrane protein structure and stability
-
Faham S, Yang D, Bare E, Yohannan S, Whitelegge JP, et al. (2004) Side-chain contributions to membrane protein structure and stability. Journal of Molecular Biology 335: 297-305.
-
(2004)
Journal of Molecular Biology
, vol.335
, pp. 297-305
-
-
Faham, S.1
Yang, D.2
Bare, E.3
Yohannan, S.4
Whitelegge, J.P.5
-
47
-
-
84876890599
-
Reduced Lateral Mobility of Lipids and Proteins in Crowded Membranes
-
Goose JE, Sansom MSP, (2013) Reduced Lateral Mobility of Lipids and Proteins in Crowded Membranes. PLoS Computational Biology 9: e1003033.
-
(2013)
PLoS Computational Biology
, vol.9
-
-
Goose, J.E.1
Sansom, M.S.P.2
-
48
-
-
84986519238
-
The weighted histogram analysis method for free-energy calculations on biomolecules. I. The method
-
Kumar S, Bouzida D, Swendsen RH, Kollman PA, Rosenberg JM, (1992) The weighted histogram analysis method for free-energy calculations on biomolecules. I. The method. Journal of Computational Chemistry 13: 1011-1021.
-
(1992)
Journal of Computational Chemistry
, vol.13
, pp. 1011-1021
-
-
Kumar, S.1
Bouzida, D.2
Swendsen, R.H.3
Kollman, P.A.4
Rosenberg, J.M.5
-
49
-
-
79955901803
-
Keep it flexible: driving macromolecular rotary motions in atomistic simulations with GROMACS
-
Kutzner C, Czub J, Grubmüller H, (2011) Keep it flexible: driving macromolecular rotary motions in atomistic simulations with GROMACS. Journal of Chemical Theory and Computation 7: 1381-1393.
-
(2011)
Journal of Chemical Theory and Computation
, vol.7
, pp. 1381-1393
-
-
Kutzner, C.1
Czub, J.2
Grubmüller, H.3
-
50
-
-
46249092554
-
GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
Hess B, Kutzner C, van der Spoel D, Lindahl E, (2008) GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation. Journal of Chemical Theory and Computation 4: 435-447.
-
(2008)
Journal of Chemical Theory and Computation
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
van der Spoel, D.3
Lindahl, E.4
-
51
-
-
78651282170
-
g_wham - a free weighted histogram analysis implementation including robust error and autocorrelation estimates
-
Hub JS, de Groot BL, van der Spoel D, (2010) g_wham- a free weighted histogram analysis implementation including robust error and autocorrelation estimates. Journal of Chemical Theory and Computation 6: 3713-3720.
-
(2010)
Journal of Chemical Theory and Computation
, vol.6
, pp. 3713-3720
-
-
Hub, J.S.1
de Groot, B.L.2
van der Spoel, D.3
|