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Volumn 15, Issue 1, 2014, Pages

Analysis of EST data of the marine protist Oxyrrhis marina, an emerging model for alveolate biology and evolution

Author keywords

Alveolates; Chromatin; Dinoflagellates; Genome; Oxyrrhis

Indexed keywords

NUCLEAR PROTEIN; UNCLASSIFIED DRUG; VIRAL NUCLEAR PROTEIN; RETROPOSON;

EID: 84896710209     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-122     Document Type: Article
Times cited : (21)

References (88)
  • 2
    • 0037217056 scopus 로고    scopus 로고
    • Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage
    • Saldarriaga JF, McEwan ML, Fast NM, Taylor FJ, Keeling PJ. Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage. Int J Syst Evol Microbiol 2003, 53(Pt 1):355-365.
    • (2003) Int J Syst Evol Microbiol , vol.53 , Issue.PART 1 , pp. 355-365
    • Saldarriaga, J.F.1    McEwan, M.L.2    Fast, N.M.3    Taylor, F.J.4    Keeling, P.J.5
  • 3
    • 34547938897 scopus 로고    scopus 로고
    • The highly reduced and fragmented mitochondrial genome of the early-branching dinoflagellate Oxyrrhis marina shares characteristics with both apicomplexan and dinoflagellate mitochondrial genomes
    • 10.1016/j.jmb.2007.06.085, 17655860
    • Slamovits CH, Saldarriaga JF, Larocque A, Keeling PJ. The highly reduced and fragmented mitochondrial genome of the early-branching dinoflagellate Oxyrrhis marina shares characteristics with both apicomplexan and dinoflagellate mitochondrial genomes. J Mol Biol 2007, 372(2):356-368. 10.1016/j.jmb.2007.06.085, 17655860.
    • (2007) J Mol Biol , vol.372 , Issue.2 , pp. 356-368
    • Slamovits, C.H.1    Saldarriaga, J.F.2    Larocque, A.3    Keeling, P.J.4
  • 6
    • 14844362770 scopus 로고    scopus 로고
    • Organization of the genome and gene expression in a nuclear environment lacking histones and nucleosomes: the amazing dinoflagellates
    • 10.1016/j.ejcb.2005.01.002, 15819396
    • Moreno Diaz de la Espina S, Alverca E, Cuadrado A, Franca S. Organization of the genome and gene expression in a nuclear environment lacking histones and nucleosomes: the amazing dinoflagellates. Eur J Cell Biol 2005, 84(2-3):137-149. 10.1016/j.ejcb.2005.01.002, 15819396.
    • (2005) Eur J Cell Biol , vol.84 , Issue.2-3 , pp. 137-149
    • Moreno Diaz de la Espina, S.1    Alverca, E.2    Cuadrado, A.3    Franca, S.4
  • 7
    • 0001584709 scopus 로고
    • Biochemistry of the dinoflagellate nucleus
    • Blackwell Botanical Monographs, Blackwell Publishing, Oxford, UK: Taylor FJR (Ed.)
    • Rizzo PJ. Biochemistry of the dinoflagellate nucleus. The biology of dinoflagellates 1987, 143-173. Blackwell Botanical Monographs, Blackwell Publishing, Oxford, UK: Taylor FJR (Ed.).
    • (1987) The biology of dinoflagellates , pp. 143-173
    • Rizzo, P.J.1
  • 8
    • 84986513651 scopus 로고
    • The enigma of the dinoflagellate chromosomes
    • Rizzo PJ. The enigma of the dinoflagellate chromosomes. J Protozool 1991, 38:246-252.
    • (1991) J Protozool , vol.38 , pp. 246-252
    • Rizzo, P.J.1
  • 9
    • 1542468222 scopus 로고    scopus 로고
    • Those amazing dinoflagellate chromosomes
    • 10.1038/sj.cr.7290166, 12974611
    • Rizzo PJ. Those amazing dinoflagellate chromosomes. Cell Res 2003, 13(4):215-217. 10.1038/sj.cr.7290166, 12974611.
    • (2003) Cell Res , vol.13 , Issue.4 , pp. 215-217
    • Rizzo, P.J.1
  • 10
    • 0001791944 scopus 로고
    • Dinoflagellate nuclei
    • New York: Academic Press, Spector DL
    • Spector DL. Dinoflagellate nuclei. Dinoflagellates 1984, 107-147. New York: Academic Press, Spector DL.
    • (1984) Dinoflagellates , pp. 107-147
    • Spector, D.L.1
  • 11
    • 0005684925 scopus 로고
    • Nutritional investigations of phagotrophic protozoa under axenic conditions
    • Droop MR. Nutritional investigations of phagotrophic protozoa under axenic conditions. Helgolander Wiss Meeresunters 1970, 20:272-277.
    • (1970) Helgolander Wiss Meeresunters , vol.20 , pp. 272-277
    • Droop, M.R.1
  • 12
    • 79952652935 scopus 로고    scopus 로고
    • Isolation and culturing strategies for the maintenance of Oxyrrhis marina
    • Lowe CD, Martin LE, Watts PC, et al. Isolation and culturing strategies for the maintenance of Oxyrrhis marina. J Plankton Res 2011, 33(4):569-578.
    • (2011) J Plankton Res , vol.33 , Issue.4 , pp. 569-578
    • Lowe, C.D.1    Martin, L.E.2    Watts, P.C.3
  • 13
    • 45849090251 scopus 로고    scopus 로고
    • Plastid-derived genes in the nonphotosynthetic alveolate Oxyrrhis marina
    • 10.1093/molbev/msn075, 18385218
    • Slamovits CH, Keeling PJ. Plastid-derived genes in the nonphotosynthetic alveolate Oxyrrhis marina. Mol Biol Evol 2008, 25(7):1297-1306. 10.1093/molbev/msn075, 18385218.
    • (2008) Mol Biol Evol , vol.25 , Issue.7 , pp. 1297-1306
    • Slamovits, C.H.1    Keeling, P.J.2
  • 15
    • 33745623084 scopus 로고    scopus 로고
    • Lateral gene transfer of a multigene region from cyanobacteria to dinoflagellates resulting in a novel plastid-targeted fusion protein
    • 10.1093/molbev/msl008, 16675503
    • Waller RF, Slamovits CH, Keeling PJ. Lateral gene transfer of a multigene region from cyanobacteria to dinoflagellates resulting in a novel plastid-targeted fusion protein. Mol Biol Evol 2006, 23(7):1437-1443. 10.1093/molbev/msl008, 16675503.
    • (2006) Mol Biol Evol , vol.23 , Issue.7 , pp. 1437-1443
    • Waller, R.F.1    Slamovits, C.H.2    Keeling, P.J.3
  • 16
    • 52049125013 scopus 로고    scopus 로고
    • Perkinsus marinus superoxide dismutase 2 (PmSOD2) localizes to single-membrane subcellular compartments
    • 10.1016/j.bbrc.2008.07.162, 18706398
    • Fernandez-Robledo JA, Schott EJ, Vasta GR. Perkinsus marinus superoxide dismutase 2 (PmSOD2) localizes to single-membrane subcellular compartments. Biochem Biophys Res Commun 2008, 375(2):215-219. 10.1016/j.bbrc.2008.07.162, 18706398.
    • (2008) Biochem Biophys Res Commun , vol.375 , Issue.2 , pp. 215-219
    • Fernandez-Robledo, J.A.1    Schott, E.J.2    Vasta, G.R.3
  • 17
    • 77954636478 scopus 로고    scopus 로고
    • A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids
    • 10.1073/pnas.1003335107, 2890776, 20534454
    • Janouskovec J, Horak A, Obornik M, Lukes J, Keeling PJ. A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proc Natl Acad Sci U S A 2010, 107(24):10949-10954. 10.1073/pnas.1003335107, 2890776, 20534454.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , Issue.24 , pp. 10949-10954
    • Janouskovec, J.1    Horak, A.2    Obornik, M.3    Lukes, J.4    Keeling, P.J.5
  • 18
    • 33845695334 scopus 로고    scopus 로고
    • Plastid genes in a non-photosynthetic dinoflagellate
    • 10.1016/j.protis.2006.09.004, 17150410
    • Sanchez-Puerta MV, Lippmeier JC, Apt KE, Delwiche CF. Plastid genes in a non-photosynthetic dinoflagellate. Protist 2007, 158(1):105-117. 10.1016/j.protis.2006.09.004, 17150410.
    • (2007) Protist , vol.158 , Issue.1 , pp. 105-117
    • Sanchez-Puerta, M.V.1    Lippmeier, J.C.2    Apt, K.E.3    Delwiche, C.F.4
  • 19
    • 45449100518 scopus 로고    scopus 로고
    • Dinoflagellates: a mitochondrial genome all at sea
    • 10.1016/j.tig.2008.04.001, 18514360
    • Nash EA, Nisbet RE, Barbrook AC, Howe CJ. Dinoflagellates: a mitochondrial genome all at sea. Trends Genet 2008, 24(7):328-335. 10.1016/j.tig.2008.04.001, 18514360.
    • (2008) Trends Genet , vol.24 , Issue.7 , pp. 328-335
    • Nash, E.A.1    Nisbet, R.E.2    Barbrook, A.C.3    Howe, C.J.4
  • 20
    • 62849116357 scopus 로고    scopus 로고
    • Dinoflagellate mitochondrial genomes: stretching the rules of molecular biology
    • 10.1002/bies.200800164, 19204978
    • Waller RF, Jackson CJ. Dinoflagellate mitochondrial genomes: stretching the rules of molecular biology. Bioessays 2009, 31(2):237-245. 10.1002/bies.200800164, 19204978.
    • (2009) Bioessays , vol.31 , Issue.2 , pp. 237-245
    • Waller, R.F.1    Jackson, C.J.2
  • 21
    • 80054694785 scopus 로고    scopus 로고
    • The transcriptome of the novel dinoflagellate Oxyrrhis marina (Alveolata: Dinophyceae): response to salinity examined by 454 sequencing
    • 10.1186/1471-2164-12-519, 3209475, 22014029
    • Lowe CD, Mello LV, Samatar N, Martin LE, Montagnes DJ, Watts PC. The transcriptome of the novel dinoflagellate Oxyrrhis marina (Alveolata: Dinophyceae): response to salinity examined by 454 sequencing. BMC Genomics 2011, 12:519. 10.1186/1471-2164-12-519, 3209475, 22014029.
    • (2011) BMC Genomics , vol.12 , pp. 519
    • Lowe, C.D.1    Mello, L.V.2    Samatar, N.3    Martin, L.E.4    Montagnes, D.J.5    Watts, P.C.6
  • 23
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred: II: error probabilities
    • Ewing B, Green P. Base-calling of automated sequencer traces using phred: II: error probabilities. Genome Res 1998, 8(3):186-194.
    • (1998) Genome Res , vol.8 , Issue.3 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 25
    • 24044554210 scopus 로고    scopus 로고
    • Human DNA repair genes, 2005
    • 10.1016/j.mrfmmm.2005.03.007, 15922366
    • Wood RD, Mitchell M, Lindahl T. Human DNA repair genes, 2005. Mutat Res 2005, 577(1-2):275-283. 10.1016/j.mrfmmm.2005.03.007, 15922366.
    • (2005) Mutat Res , vol.577 , Issue.1-2 , pp. 275-283
    • Wood, R.D.1    Mitchell, M.2    Lindahl, T.3
  • 26
    • 0035895504 scopus 로고    scopus 로고
    • Human DNA repair genes
    • 10.1126/science.1056154, 11181991
    • Wood RD, Mitchell M, Sgouros J, Lindahl T. Human DNA repair genes. Science 2001, 291(5507):1284-1289. 10.1126/science.1056154, 11181991.
    • (2001) Science , vol.291 , Issue.5507 , pp. 1284-1289
    • Wood, R.D.1    Mitchell, M.2    Sgouros, J.3    Lindahl, T.4
  • 30
    • 51449085783 scopus 로고    scopus 로고
    • An expanded inventory of conserved meiotic genes provides evidence for sex in Trichomonas vaginalis
    • Malik SB, Pightling AW, Stefaniak LM, Schurko AM, Logsdon JM. An expanded inventory of conserved meiotic genes provides evidence for sex in Trichomonas vaginalis. PLoS One 2008, 3(8):e2879.
    • (2008) PLoS One , vol.3 , Issue.8
    • Malik, S.B.1    Pightling, A.W.2    Stefaniak, L.M.3    Schurko, A.M.4    Logsdon, J.M.5
  • 31
    • 55449096966 scopus 로고    scopus 로고
    • REC, Drosophila MCM8, drives formation of meiotic crossovers
    • 10.1371/journal.pgen.0010040, 1231718, 16189551
    • Blanton HL, Radford SJ, McMahan S, Kearney HM, Ibrahim JG, Sekelsky J. REC, Drosophila MCM8, drives formation of meiotic crossovers. PLoS Genet 2005, 1(3):e40. 10.1371/journal.pgen.0010040, 1231718, 16189551.
    • (2005) PLoS Genet , vol.1 , Issue.3
    • Blanton, H.L.1    Radford, S.J.2    McMahan, S.3    Kearney, H.M.4    Ibrahim, J.G.5    Sekelsky, J.6
  • 32
    • 1542376771 scopus 로고    scopus 로고
    • The evolution of SMC proteins: phylogenetic analysis and structural implications
    • Cobbe N, Heck MM. The evolution of SMC proteins: phylogenetic analysis and structural implications. Mol Biol Evol 2004, 21(2):332-347.
    • (2004) Mol Biol Evol , vol.21 , Issue.2 , pp. 332-347
    • Cobbe, N.1    Heck, M.M.2
  • 33
    • 0036531901 scopus 로고    scopus 로고
    • A unified view of the DNA-damage checkpoint
    • 10.1016/S0955-0674(02)00312-5, 11891124
    • Melo J, Toczyski D. A unified view of the DNA-damage checkpoint. Curr Opin Cell Biol 2002, 14(2):237-245. 10.1016/S0955-0674(02)00312-5, 11891124.
    • (2002) Curr Opin Cell Biol , vol.14 , Issue.2 , pp. 237-245
    • Melo, J.1    Toczyski, D.2
  • 34
    • 74549175670 scopus 로고    scopus 로고
    • A genome-sequence survey for Ascogregarina taiwanensis supports evolutionary affiliation but metabolic diversity between a Gregarine and Cryptosporidium
    • 10.1093/molbev/msp226, 2877549, 19778951
    • Templeton TJ, Enomoto S, Chen WJ, Huang CG, Lancto CA, Abrahamsen MS, Zhu G. A genome-sequence survey for Ascogregarina taiwanensis supports evolutionary affiliation but metabolic diversity between a Gregarine and Cryptosporidium. Mol Biol Evol 2010, 27(2):235-248. 10.1093/molbev/msp226, 2877549, 19778951.
    • (2010) Mol Biol Evol , vol.27 , Issue.2 , pp. 235-248
    • Templeton, T.J.1    Enomoto, S.2    Chen, W.J.3    Huang, C.G.4    Lancto, C.A.5    Abrahamsen, M.S.6    Zhu, G.7
  • 35
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • 10.1093/sysbio/syq010, 20525638
    • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 2010, 59(3):307-321. 10.1093/sysbio/syq010, 20525638.
    • (2010) Syst Biol , vol.59 , Issue.3 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 36
    • 77955019084 scopus 로고    scopus 로고
    • Parallelization of the MAFFT multiple sequence alignment program
    • 10.1093/bioinformatics/btq224, 2905546, 20427515
    • Katoh K, Toh H. Parallelization of the MAFFT multiple sequence alignment program. Bioinformatics 2010, 26(15):1899-1900. 10.1093/bioinformatics/btq224, 2905546, 20427515.
    • (2010) Bioinformatics , vol.26 , Issue.15 , pp. 1899-1900
    • Katoh, K.1    Toh, H.2
  • 37
    • 25444475785 scopus 로고    scopus 로고
    • A standard curve based method for relative real time PCR data processing
    • 10.1186/1471-2105-6-62, 1274258, 15780134
    • Larionov A, Krause A, Miller W. A standard curve based method for relative real time PCR data processing. BMC Bioinformatics 2005, 6:62. 10.1186/1471-2105-6-62, 1274258, 15780134.
    • (2005) BMC Bioinformatics , vol.6 , pp. 62
    • Larionov, A.1    Krause, A.2    Miller, W.3
  • 39
    • 79959822829 scopus 로고    scopus 로고
    • Perkinsozoa, a well-known marine protozoan flagellate parasite group, newly identified in lacustrine systems: a review
    • Mangot JF, Debroas D, Domaizon I. Perkinsozoa, a well-known marine protozoan flagellate parasite group, newly identified in lacustrine systems: a review. Hydrobiologia 2011, 659(1):37-48.
    • (2011) Hydrobiologia , vol.659 , Issue.1 , pp. 37-48
    • Mangot, J.F.1    Debroas, D.2    Domaizon, I.3
  • 41
    • 60949088852 scopus 로고    scopus 로고
    • Chromalveolate plastids: direct descent or multiple endosymbioses?
    • author reply 121-112, 10.1016/j.tree.2008.11.003, 19200617
    • Bodyl A, Stiller JW, Mackiewicz P. Chromalveolate plastids: direct descent or multiple endosymbioses?. Trends Ecol Evol 2009, 24(3):119-121. author reply 121-112, 10.1016/j.tree.2008.11.003, 19200617.
    • (2009) Trends Ecol Evol , vol.24 , Issue.3 , pp. 119-121
    • Bodyl, A.1    Stiller, J.W.2    Mackiewicz, P.3
  • 42
    • 84865853707 scopus 로고    scopus 로고
    • Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin
    • Burki F, Flegontov P, Obornik M, Cihlar J, Pain A, Lukes J, Keeling PJ. Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin. Genome Biol Evol 2012, 4(6):626-635.
    • (2012) Genome Biol Evol , vol.4 , Issue.6 , pp. 626-635
    • Burki, F.1    Flegontov, P.2    Obornik, M.3    Cihlar, J.4    Pain, A.5    Lukes, J.6    Keeling, P.J.7
  • 43
    • 77349112000 scopus 로고    scopus 로고
    • The endosymbiotic origin, diversification and fate of plastids
    • 10.1098/rstb.2009.0103, 2817223, 20124341
    • Keeling PJ. The endosymbiotic origin, diversification and fate of plastids. Philos Trans R Soc Lond B Biol Sci 2010, 365(1541):729-748. 10.1098/rstb.2009.0103, 2817223, 20124341.
    • (2010) Philos Trans R Soc Lond B Biol Sci , vol.365 , Issue.1541 , pp. 729-748
    • Keeling, P.J.1
  • 44
    • 0032404453 scopus 로고    scopus 로고
    • You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
    • 10.1016/S0168-9525(98)01494-2, 9724962
    • Doolittle WF. You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet 1998, 14(8):307-311. 10.1016/S0168-9525(98)01494-2, 9724962.
    • (1998) Trends Genet , vol.14 , Issue.8 , pp. 307-311
    • Doolittle, W.F.1
  • 45
    • 77954304118 scopus 로고    scopus 로고
    • Gene expression in proliferating cells of the dinoflagellate Alexandrium catenella (Dinophyceae)
    • 10.1128/AEM.02345-09, 2897438, 20435767
    • Toulza E, Shin MS, Blanc G, Audic S, Laabir M, Collos Y, Claverie JM, Grzebyk D. Gene expression in proliferating cells of the dinoflagellate Alexandrium catenella (Dinophyceae). Appl Environ Microbiol 2010, 76(13):4521-4529. 10.1128/AEM.02345-09, 2897438, 20435767.
    • (2010) Appl Environ Microbiol , vol.76 , Issue.13 , pp. 4521-4529
    • Toulza, E.1    Shin, M.S.2    Blanc, G.3    Audic, S.4    Laabir, M.5    Collos, Y.6    Claverie, J.M.7    Grzebyk, D.8
  • 46
    • 34848921882 scopus 로고    scopus 로고
    • Spliced leader RNA-mediated trans-splicing in a dinoflagellate: Karenia brevis
    • Lidie KB, Van Dolah FM. Spliced leader RNA-mediated trans-splicing in a dinoflagellate: Karenia brevis. J Euk Micro 2007, 54(5):427-435.
    • (2007) J Euk Micro , vol.54 , Issue.5 , pp. 427-435
    • Lidie, K.B.1    Van Dolah, F.M.2
  • 47
    • 70350495638 scopus 로고    scopus 로고
    • Expressed sequence tags from Amoebophrya sp. infecting Karlodinium veneficum: comparing host and parasite sequences
    • Bachvaroff TR, Place AR, Coats DW. Expressed sequence tags from Amoebophrya sp. infecting Karlodinium veneficum: comparing host and parasite sequences. J Euk Micro 2009, 56(6):531-541.
    • (2009) J Euk Micro , vol.56 , Issue.6 , pp. 531-541
    • Bachvaroff, T.R.1    Place, A.R.2    Coats, D.W.3
  • 48
    • 77950944296 scopus 로고    scopus 로고
    • Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum
    • 10.1186/1471-2164-11-248, 2874808, 20403159
    • Yang I, John U, Beszteri S, Glockner G, Krock B, Goesmann A, Cembella AD. Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum. BMC Genomics 2010, 11:248. 10.1186/1471-2164-11-248, 2874808, 20403159.
    • (2010) BMC Genomics , vol.11 , pp. 248
    • Yang, I.1    John, U.2    Beszteri, S.3    Glockner, G.4    Krock, B.5    Goesmann, A.6    Cembella, A.D.7
  • 49
    • 78650119648 scopus 로고    scopus 로고
    • Genome sequence of Oceanicaulis sp. strain HTCC2633, isolated from the Western Sargasso Sea
    • 10.1128/JB.01267-10, 3019947, 21036991
    • Oh HM, Kang I, Vergin KL, Lee K, Giovannoni SJ, Cho JC. Genome sequence of Oceanicaulis sp. strain HTCC2633, isolated from the Western Sargasso Sea. J Bacteriol 2011, 193(1):317-318. 10.1128/JB.01267-10, 3019947, 21036991.
    • (2011) J Bacteriol , vol.193 , Issue.1 , pp. 317-318
    • Oh, H.M.1    Kang, I.2    Vergin, K.L.3    Lee, K.4    Giovannoni, S.J.5    Cho, J.C.6
  • 50
    • 0344465306 scopus 로고    scopus 로고
    • Oceanicaulis alexandrii gen. nov., sp. nov., a novel stalked bacterium isolated from a culture of the dinoflagellate Alexandrium tamarense (Lebour) Balech
    • Strompl C, Hold GL, Lunsdorf H, Graham J, Gallacher S, Abraham WR, Moore ER, Timmis KN. Oceanicaulis alexandrii gen. nov., sp. nov., a novel stalked bacterium isolated from a culture of the dinoflagellate Alexandrium tamarense (Lebour) Balech. Int J Syst Evol Microbiol 2003, 53(Pt 6):1901-1906.
    • (2003) Int J Syst Evol Microbiol , vol.53 , Issue.PART 6 , pp. 1901-1906
    • Strompl, C.1    Hold, G.L.2    Lunsdorf, H.3    Graham, J.4    Gallacher, S.5    Abraham, W.R.6    Moore, E.R.7    Timmis, K.N.8
  • 51
    • 0035213199 scopus 로고    scopus 로고
    • Bacterial community associated with Pfiesteria-like dinoflagellate cultures
    • 10.1046/j.1462-2920.2001.00207.x, 11472503
    • Alavi M, Miller T, Erlandson K, Schneider R, Belas R. Bacterial community associated with Pfiesteria-like dinoflagellate cultures. Environ Microbiol 2001, 3(6):380-396. 10.1046/j.1462-2920.2001.00207.x, 11472503.
    • (2001) Environ Microbiol , vol.3 , Issue.6 , pp. 380-396
    • Alavi, M.1    Miller, T.2    Erlandson, K.3    Schneider, R.4    Belas, R.5
  • 52
    • 0036239238 scopus 로고    scopus 로고
    • Identification of bacteria associated with dinoflagellates (Dinophyceae) Alexandrium spp. using tyramide signal amplification-fluorescent in situ hybridization and confocal microscopy
    • Biegala IC, Kennaway G, Alverca E, Lennon JF, Vaulot D, Simon N. Identification of bacteria associated with dinoflagellates (Dinophyceae) Alexandrium spp. using tyramide signal amplification-fluorescent in situ hybridization and confocal microscopy. J Phycol 2002, 38(2):404-411.
    • (2002) J Phycol , vol.38 , Issue.2 , pp. 404-411
    • Biegala, I.C.1    Kennaway, G.2    Alverca, E.3    Lennon, J.F.4    Vaulot, D.5    Simon, N.6
  • 53
    • 22144449280 scopus 로고    scopus 로고
    • Phylogenetic diversity and specificity of bacteria closely associated with Alexandrium spp. and other phytoplankton
    • 10.1128/AEM.71.7.3483-3494.2005, 1169014, 16000752
    • Jasti S, Sieracki ME, Poulton NJ, Giewat MW, Rooney-Varga JN. Phylogenetic diversity and specificity of bacteria closely associated with Alexandrium spp. and other phytoplankton. Appl Environ Microbiol 2005, 71(7):3483-3494. 10.1128/AEM.71.7.3483-3494.2005, 1169014, 16000752.
    • (2005) Appl Environ Microbiol , vol.71 , Issue.7 , pp. 3483-3494
    • Jasti, S.1    Sieracki, M.E.2    Poulton, N.J.3    Giewat, M.W.4    Rooney-Varga, J.N.5
  • 55
    • 4644285781 scopus 로고    scopus 로고
    • Isolation of a dinoflagellate mitotic cyclin by functional complementation in yeast
    • 10.1016/j.bbrc.2004.09.008, 15451420
    • Bertomeu T, Morse D. Isolation of a dinoflagellate mitotic cyclin by functional complementation in yeast. Biochem Biophys Res Commun 2004, 323(4):1172-1183. 10.1016/j.bbrc.2004.09.008, 15451420.
    • (2004) Biochem Biophys Res Commun , vol.323 , Issue.4 , pp. 1172-1183
    • Bertomeu, T.1    Morse, D.2
  • 56
    • 0027516422 scopus 로고
    • Molecular cloning and genomic organization of a gene for luciferin-binding protein from the dinoflagellate Gonyaulax polyedra
    • Lee DH, Mittag M, Sczekan S, Morse D, Hastings JW. Molecular cloning and genomic organization of a gene for luciferin-binding protein from the dinoflagellate Gonyaulax polyedra. J Biol Chem 1993, 268(12):8842-8850.
    • (1993) J Biol Chem , vol.268 , Issue.12 , pp. 8842-8850
    • Lee, D.H.1    Mittag, M.2    Sczekan, S.3    Morse, D.4    Hastings, J.W.5
  • 57
    • 51449120033 scopus 로고    scopus 로고
    • From stop to start: tandem gene arrangement, copy number and trans-splicing sites in the dinoflagellate Amphidinium carterae
    • 10.1371/journal.pone.0002929, 2488372, 18698341
    • Bachvaroff TR, Place AR. From stop to start: tandem gene arrangement, copy number and trans-splicing sites in the dinoflagellate Amphidinium carterae. PLoS One 2008, 3(8):e2929. 10.1371/journal.pone.0002929, 2488372, 18698341.
    • (2008) PLoS One , vol.3 , Issue.8
    • Bachvaroff, T.R.1    Place, A.R.2
  • 58
    • 70450228554 scopus 로고    scopus 로고
    • Localization and copy number of the protein-coding genes actin, alpha-tubulin, and HSP90 in the nucleus of a primitive dinoflagellate
    • Sano J, Kato KH. Localization and copy number of the protein-coding genes actin, alpha-tubulin, and HSP90 in the nucleus of a primitive dinoflagellate. Oxyrrhis Marina Zoolog Sci 2009, 26(11):745-753.
    • (2009) Oxyrrhis Marina Zoolog Sci , vol.26 , Issue.11 , pp. 745-753
    • Sano, J.1    Kato, K.H.2
  • 59
    • 70349202709 scopus 로고    scopus 로고
    • Distinct gene number-genome size relationships for eukaryotes and non-eukaryotes: gene content estimation for dinoflagellate genomes
    • 10.1371/journal.pone.0006978, 2737104, 19750009
    • Hou Y, Lin S. Distinct gene number-genome size relationships for eukaryotes and non-eukaryotes: gene content estimation for dinoflagellate genomes. PLoS One 2009, 4(9):e6978. 10.1371/journal.pone.0006978, 2737104, 19750009.
    • (2009) PLoS One , vol.4 , Issue.9
    • Hou, Y.1    Lin, S.2
  • 60
    • 82555170567 scopus 로고    scopus 로고
    • Comparative genomic and transcriptomic characterization of the toxigenic marine dinoflagellate alexandrium ostenfeldii
    • 10.1371/journal.pone.0028012, 3229502, 22164224
    • Jaeckisch N, Yang I, Wohlrab S, Glockner G, Kroymann J, Vogel H, Cembella A, John U. Comparative genomic and transcriptomic characterization of the toxigenic marine dinoflagellate alexandrium ostenfeldii. PLoS One 2011, 6(12):e28012. 10.1371/journal.pone.0028012, 3229502, 22164224.
    • (2011) PLoS One , vol.6 , Issue.12
    • Jaeckisch, N.1    Yang, I.2    Wohlrab, S.3    Glockner, G.4    Kroymann, J.5    Vogel, H.6    Cembella, A.7    John, U.8
  • 61
    • 79959830057 scopus 로고    scopus 로고
    • Transcriptomic response of the red tide dinoflagellate, Karenia brevis, to nitrogen and phosphorus depletion and addition
    • 10.1186/1471-2164-12-346, 3149589, 21729317
    • Morey JS, Monroe EA, Kinney AL, Beal M, Johnson JG, Hitchcock GL, Van Dolah FM. Transcriptomic response of the red tide dinoflagellate, Karenia brevis, to nitrogen and phosphorus depletion and addition. BMC Genomics 2011, 12(1):346. 10.1186/1471-2164-12-346, 3149589, 21729317.
    • (2011) BMC Genomics , vol.12 , Issue.1 , pp. 346
    • Morey, J.S.1    Monroe, E.A.2    Kinney, A.L.3    Beal, M.4    Johnson, J.G.5    Hitchcock, G.L.6    Van Dolah, F.M.7
  • 62
    • 77950397835 scopus 로고    scopus 로고
    • Transcriptome profiling of a toxic dinoflagellate reveals a gene-rich protist and a potential impact on gene expression due to bacterial presence
    • 10.1371/journal.pone.0009688, 2837391, 20300646
    • Moustafa A, Evans AN, Kulis DM, Hackett JD, Erdner DL, Anderson DM, Bhattacharya D. Transcriptome profiling of a toxic dinoflagellate reveals a gene-rich protist and a potential impact on gene expression due to bacterial presence. PLoS One 2010, 5(3):e9688. 10.1371/journal.pone.0009688, 2837391, 20300646.
    • (2010) PLoS One , vol.5 , Issue.3
    • Moustafa, A.1    Evans, A.N.2    Kulis, D.M.3    Hackett, J.D.4    Erdner, D.L.5    Anderson, D.M.6    Bhattacharya, D.7
  • 63
    • 33846880495 scopus 로고    scopus 로고
    • Highly efficient concerted evolution in the ribosomal DNA repeats: total rDNA repeat variation revealed by whole-genome shotgun sequence data
    • 10.1101/gr.5457707, 1781350, 17200233
    • Ganley AR, Kobayashi T. Highly efficient concerted evolution in the ribosomal DNA repeats: total rDNA repeat variation revealed by whole-genome shotgun sequence data. Genome Res 2007, 17(2):184-191. 10.1101/gr.5457707, 1781350, 17200233.
    • (2007) Genome Res , vol.17 , Issue.2 , pp. 184-191
    • Ganley, A.R.1    Kobayashi, T.2
  • 64
    • 45349103446 scopus 로고    scopus 로고
    • AcpA, a member of the GPR1/FUN34/YaaH membrane protein family, is essential for acetate permease activity in the hyphal fungus Aspergillus nidulans
    • 10.1042/BJ20080124, 18302536
    • Robellet X, Flipphi M, Pegot S, Maccabe AP, Velot C. AcpA, a member of the GPR1/FUN34/YaaH membrane protein family, is essential for acetate permease activity in the hyphal fungus Aspergillus nidulans. Biochem J 2008, 412(3):485-493. 10.1042/BJ20080124, 18302536.
    • (2008) Biochem J , vol.412 , Issue.3 , pp. 485-493
    • Robellet, X.1    Flipphi, M.2    Pegot, S.3    Maccabe, A.P.4    Velot, C.5
  • 65
    • 34147110835 scopus 로고    scopus 로고
    • Mutations at different sites in members of the Gpr1/Fun34/YaaH protein family cause hypersensitivity to acetic acid in Saccharomyces cerevisiae as well as in Yarrowia lipolytica
    • 10.1111/j.1567-1364.2006.00191.x, 17233767
    • Gentsch M, Kuschel M, Schlegel S, Barth G. Mutations at different sites in members of the Gpr1/Fun34/YaaH protein family cause hypersensitivity to acetic acid in Saccharomyces cerevisiae as well as in Yarrowia lipolytica. FEMS Yeast Res 2007, 7(3):380-390. 10.1111/j.1567-1364.2006.00191.x, 17233767.
    • (2007) FEMS Yeast Res , vol.7 , Issue.3 , pp. 380-390
    • Gentsch, M.1    Kuschel, M.2    Schlegel, S.3    Barth, G.4
  • 66
    • 37349046465 scopus 로고    scopus 로고
    • Efficacy of RNA amplification is dependent on sequence characteristics: implications for gene expression profiling using a cDNA microarray
    • 10.1016/j.ygeno.2007.09.004, 2258226, 18006269
    • Duftner N, Larkins-Ford J, Legendre M, Hofmann HA. Efficacy of RNA amplification is dependent on sequence characteristics: implications for gene expression profiling using a cDNA microarray. Genomics 2008, 91(1):108-117. 10.1016/j.ygeno.2007.09.004, 2258226, 18006269.
    • (2008) Genomics , vol.91 , Issue.1 , pp. 108-117
    • Duftner, N.1    Larkins-Ford, J.2    Legendre, M.3    Hofmann, H.A.4
  • 67
    • 79960462848 scopus 로고    scopus 로고
    • Post-transcriptional regulation of S-phase genes in the dinoflagellate: Karenia brevis
    • Brunelle SA, Vand FM. Post-transcriptional regulation of S-phase genes in the dinoflagellate: Karenia brevis. J Euk Micro 2011, 58(4):373-382.
    • (2011) J Euk Micro , vol.58 , Issue.4 , pp. 373-382
    • Brunelle, S.A.1    Vand, F.M.2
  • 68
    • 33744788118 scopus 로고    scopus 로고
    • Global transcriptional profiling of the toxic dinoflagellate Alexandrium fundyense using massively parallel signature sequencing
    • 10.1186/1471-2164-7-88, 1473201, 16638123
    • Erdner DL, Anderson DM. Global transcriptional profiling of the toxic dinoflagellate Alexandrium fundyense using massively parallel signature sequencing. BMC Genomics 2006, 7:88. 10.1186/1471-2164-7-88, 1473201, 16638123.
    • (2006) BMC Genomics , vol.7 , pp. 88
    • Erdner, D.L.1    Anderson, D.M.2
  • 69
    • 0028409697 scopus 로고
    • Expression and genomic organization of a dinoflagellate gene family
    • 10.1007/BF00024195, 8003695
    • Machabee S, Wall L, Morse D. Expression and genomic organization of a dinoflagellate gene family. Plant Mol Biol 1994, 25(1):23-31. 10.1007/BF00024195, 8003695.
    • (1994) Plant Mol Biol , vol.25 , Issue.1 , pp. 23-31
    • Machabee, S.1    Wall, L.2    Morse, D.3
  • 70
    • 84960649910 scopus 로고
    • La signification cytologique de la cyclose nucleaire dans le cycle de vie des Dinoflagellates
    • Von Stosch HA. La signification cytologique de la cyclose nucleaire dans le cycle de vie des Dinoflagellates. Soc Bot Fr Memoires 1972, 201-212.
    • (1972) Soc Bot Fr Memoires , pp. 201-212
    • Von Stosch, H.A.1
  • 71
    • 84953994279 scopus 로고
    • Observations on vegetative reproduction and sexual life cycles of two freswater dinoflagellates, Gymnodinium pseudopalustre Schiller and Woloszynkskia apiculata sp. Nov
    • Von Stosch HA. Observations on vegetative reproduction and sexual life cycles of two freswater dinoflagellates, Gymnodinium pseudopalustre Schiller and Woloszynkskia apiculata sp. Nov. Br Phycol J 1973, 8:105-134.
    • (1973) Br Phycol J , vol.8 , pp. 105-134
    • Von Stosch, H.A.1
  • 73
    • 12544259704 scopus 로고    scopus 로고
    • A phylogenomic inventory of meiotic genes; evidence for sex in Giardia and an early eukaryotic origin of meiosis
    • Ramesh MA, Malik SB, Logsdon JM. A phylogenomic inventory of meiotic genes; evidence for sex in Giardia and an early eukaryotic origin of meiosis. Curr Biol: CB 2005, 15(2):185-191.
    • (2005) Curr Biol: CB , vol.15 , Issue.2 , pp. 185-191
    • Ramesh, M.A.1    Malik, S.B.2    Logsdon, J.M.3
  • 74
    • 0035929331 scopus 로고    scopus 로고
    • Whence meiosis?
    • 10.1016/S0092-8674(01)00500-1, 11572770
    • Villeneuve AM, Hillers KJ. Whence meiosis?. Cell 2001, 106(6):647-650. 10.1016/S0092-8674(01)00500-1, 11572770.
    • (2001) Cell , vol.106 , Issue.6 , pp. 647-650
    • Villeneuve, A.M.1    Hillers, K.J.2
  • 75
    • 84871289612 scopus 로고    scopus 로고
    • Loss of nucleosomal DNA condensation coincides with appearance of a novel nuclear protein in dinoflagellates
    • Gornik SG, Ford KL, Mulhern TD, Bacic A, McFadden GI, Waller RF. Loss of nucleosomal DNA condensation coincides with appearance of a novel nuclear protein in dinoflagellates. Curr Biol: CB 2012, 22(24):2303-2312.
    • (2012) Curr Biol: CB , vol.22 , Issue.24 , pp. 2303-2312
    • Gornik, S.G.1    Ford, K.L.2    Mulhern, T.D.3    Bacic, A.4    McFadden, G.I.5    Waller, R.F.6
  • 76
    • 0020958515 scopus 로고
    • Studies on dinoflagellate chromosomal basic protein
    • 10.1016/0303-2647(83)90006-0, 6424736
    • Li JY. Studies on dinoflagellate chromosomal basic protein. Biosystems 1983, 16(3-4):217-225. 10.1016/0303-2647(83)90006-0, 6424736.
    • (1983) Biosystems , vol.16 , Issue.3-4 , pp. 217-225
    • Li, J.Y.1
  • 77
    • 84859357011 scopus 로고    scopus 로고
    • A full suite of histone and histone modifying genes are transcribed in the dinoflagellate Lingulodinium
    • 10.1371/journal.pone.0034340, 3319573, 22496791
    • Roy S, Morse D. A full suite of histone and histone modifying genes are transcribed in the dinoflagellate Lingulodinium. PLoS One 2012, 7(4):e34340. 10.1371/journal.pone.0034340, 3319573, 22496791.
    • (2012) PLoS One , vol.7 , Issue.4
    • Roy, S.1    Morse, D.2
  • 78
    • 0038143248 scopus 로고    scopus 로고
    • Histone-like proteins of the dinoflagellate Crypthecodinium cohnii have homologies to bacterial DNA-binding proteins
    • 10.1128/EC.2.3.646-650.2003, 161454, 12796310
    • Wong JT, New DC, Wong JC, Hung VK. Histone-like proteins of the dinoflagellate Crypthecodinium cohnii have homologies to bacterial DNA-binding proteins. Eukaryot Cell 2003, 2(3):646-650. 10.1128/EC.2.3.646-650.2003, 161454, 12796310.
    • (2003) Eukaryot Cell , vol.2 , Issue.3 , pp. 646-650
    • Wong, J.T.1    New, D.C.2    Wong, J.C.3    Hung, V.K.4
  • 79
    • 0030843981 scopus 로고    scopus 로고
    • Isolation of the major basic nuclear protein and its localization on chromosomes of the dinoflagellate: Oxyrrhis marina
    • 10.1016/S0248-4900(99)80080-X, 9297782
    • Kato KH, Moriyama A, Huitorel P, Cosson J, Cachon M, Sato H. Isolation of the major basic nuclear protein and its localization on chromosomes of the dinoflagellate: Oxyrrhis marina. Biol Cell 1997, 89(1):43-52. 10.1016/S0248-4900(99)80080-X, 9297782.
    • (1997) Biol Cell , vol.89 , Issue.1 , pp. 43-52
    • Kato, K.H.1    Moriyama, A.2    Huitorel, P.3    Cosson, J.4    Cachon, M.5    Sato, H.6
  • 80
    • 0242661619 scopus 로고    scopus 로고
    • Genome-wide analysis of redox-regulated genes in a dinoflagellate
    • Okamoto OK, Hastings JW. Genome-wide analysis of redox-regulated genes in a dinoflagellate. Gene 2003, 321:73-81.
    • (2003) Gene , vol.321 , pp. 73-81
    • Okamoto, O.K.1    Hastings, J.W.2
  • 81
    • 0038009383 scopus 로고    scopus 로고
    • Novel dinoflagellate clock-related genes identified through microarray analysis
    • Okamoto OK, Hastings JW. Novel dinoflagellate clock-related genes identified through microarray analysis. J Phycol 2003, 39:519-526.
    • (2003) J Phycol , vol.39 , pp. 519-526
    • Okamoto, O.K.1    Hastings, J.W.2
  • 82
    • 85011940677 scopus 로고    scopus 로고
    • Role of the snRNAs in spliceosomal active site
    • 10.4161/rna.7.3.12089, 20458185
    • Valadkhan S. Role of the snRNAs in spliceosomal active site. RNA Biol 2010, 7(3):345-353. 10.4161/rna.7.3.12089, 20458185.
    • (2010) RNA Biol , vol.7 , Issue.3 , pp. 345-353
    • Valadkhan, S.1
  • 83
    • 28844459719 scopus 로고    scopus 로고
    • The C. elegans Research Community, WormBook: WormBook, ed, doi/10.1895/wormbook.1.5.2,
    • Blumenthal T. Trans-splicing and operons in C. elegans 2012, The C. elegans Research Community, WormBook: WormBook, ed, doi/10.1895/wormbook.1.5.2,?http://www.wormbook.org.
    • (2012) Trans-splicing and operons in C. elegans
    • Blumenthal, T.1
  • 84
    • 45849153886 scopus 로고    scopus 로고
    • Widespread recycling of processed cDNAs in dinoflagellates
    • Slamovits CH, Keeling PJ. Widespread recycling of processed cDNAs in dinoflagellates. Curr Biol: CB 2008, 18(13):R550-R552.
    • (2008) Curr Biol: CB , vol.18 , Issue.13
    • Slamovits, C.H.1    Keeling, P.J.2
  • 85
    • 79952685380 scopus 로고    scopus 로고
    • Contributions of Oxyrrhis marina to molecular biology, genomics and organelle evolution of dinoflagellates
    • Slamovits CH, Keeling PJ. Contributions of Oxyrrhis marina to molecular biology, genomics and organelle evolution of dinoflagellates. J Plankton Res 2011, 33(4):591-602.
    • (2011) J Plankton Res , vol.33 , Issue.4 , pp. 591-602
    • Slamovits, C.H.1    Keeling, P.J.2
  • 86
    • 2942620629 scopus 로고    scopus 로고
    • Evolution of glutamate dehydrogenase genes: evidence for lateral gene transfer within and between prokaryotes and eukaryotes
    • 10.1186/1471-2148-3-14, 166173, 12820901
    • Andersson JO, Roger AJ. Evolution of glutamate dehydrogenase genes: evidence for lateral gene transfer within and between prokaryotes and eukaryotes. BMC Evol Biol 2003, 3:14. 10.1186/1471-2148-3-14, 166173, 12820901.
    • (2003) BMC Evol Biol , vol.3 , pp. 14
    • Andersson, J.O.1    Roger, A.J.2
  • 87
    • 0027358810 scopus 로고
    • Three overlapping lct genes involved in L-lactate utilization by Escherichia coli
    • 206779, 8407843
    • Dong JM, Taylor JS, Latour DJ, Iuchi S, Lin EC. Three overlapping lct genes involved in L-lactate utilization by Escherichia coli. J Bacteriol 1993, 175(20):6671-6678. 206779, 8407843.
    • (1993) J Bacteriol , vol.175 , Issue.20 , pp. 6671-6678
    • Dong, J.M.1    Taylor, J.S.2    Latour, D.J.3    Iuchi, S.4    Lin, E.C.5
  • 88
    • 58149109089 scopus 로고    scopus 로고
    • Medium- and short-chain dehydrogenase/reductase gene and protein families: the MDR superfamily
    • 10.1007/s00018-008-8587-z, 2792335, 19011751
    • Persson B, Hedlund J, Jornvall H. Medium- and short-chain dehydrogenase/reductase gene and protein families: the MDR superfamily. Cell Mol Life Sci 2008, 65(24):3879-3894. 10.1007/s00018-008-8587-z, 2792335, 19011751.
    • (2008) Cell Mol Life Sci , vol.65 , Issue.24 , pp. 3879-3894
    • Persson, B.1    Hedlund, J.2    Jornvall, H.3


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