Localization microscopy for the study of amyloid fibril formation

Proceedings of SPIE - The International Society for Optical Engineering

Volumn 8815, Issue , 2013, Pages

  Pinotsi, Dorothea ^a   Kaminski Schierle, Gabriele S ^a   Rees, Eric ^a   Kaminski, Clemens F ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

amyloid fibrils; in situ imaging; super resolution microscopy

Indexed keywords

AMYLOID FIBRIL; AMYLOID FIBRIL FORMATION; INTRACELLULAR STRUCTURES; OPTICAL RECONSTRUCTION; SELF ASSEMBLY PROCESS; SINGLE-MOLECULE LOCALIZATIONS; SITU IMAGING; SUPER-RESOLUTION MICROSCOPY;

AGGLOMERATION; NEURODEGENERATIVE DISEASES;

OPTICAL RESOLVING POWER;

EID: 84896690782     PISSN: 0277786X     EISSN: 1996756X     Source Type: Conference Proceeding    
DOI: 10.1117/12.2022589     Document Type: Conference Paper

References (30)

1. C. M. Dobson, "Protein folding and misfolding.," Nature, vol. 426, no. 6968, pp. 884-90, Dec. 2003.
2. A. W. P. Fitzpatrick, G. T. Debelouchina, M. J. Bayro, D. K. Clare, M. A. Caporini, V. S. Bajaj, C. P. Jaroniec, L. Wang, V. Ladizhansky, S. A. Müller, C. E. MacPhee, C. A. Waudby, H. R. Mott, A. De Simone, T. P. J. Knowles, H. R. Saibil, M. Vendruscolo, E. V Orlova, R. G. Griffin, and C. M. Dobson, "Atomic structure and hierarchical assembly of a cross-β amyloid fibril.," Proceedings of the National Academy of Sciences of the United States of America, vol. 110, no. 14, pp. 5468-73, Apr. 2013.
3. E. Hellstrand, B. Boland, D. M. Walsh, and S. Linse, "Amyloid β-Protein Aggregation Produces Highly Reproducible Kinetic Data and Occurs by a Two-Phase Process.," ACS chemical neuroscience, vol. 1, no. 1, pp. 13-8, Jan. 2010.
4. T. J. van Ham, A. Esposito, J. R. Kumita, S.-T. D. Hsu, G. S. Kaminski Schierle, C. F. Kaminski, C. M. Dobson, E. A. A. Nollen, and C. W. Bertoncini, "Towards multiparametric fluorescent imaging of amyloid formation: studies of a YFP model of alpha-synuclein aggregation.," Journal of molecular biology, vol. 395, no. 3, pp. 627-42, Jan. 2010.
5. D. Pinotsi, A. K. Buell, C. M. Dobson, G. S. Kaminski Schierle, and C. F. Kaminski, "A label-free, quantitative assay of amyloid fibril growth based on intrinsic fluorescence.," Chembiochem : a European journal of chemical biology, vol. 14, no. 7, pp. 846-50, May 2013.
6. F. T. S. Chan, G. S. Kaminski Schierle, J. R. Kumita, C. W. Bertoncini, C. M. Dobson, and C. F. Kaminski, "Protein amyloids develop an intrinsic fluorescence signature during aggregation.," The Analyst, vol. 138, no. 7, pp. 2156-62, Apr. 2013.
7. G. S. Kaminski Schierle, C. W. Bertoncini, F. T. S. Chan, A. T. van der Goot, S. Schwedler, J. Skepper, S. Schlachter, T. van Ham, A. Esposito, J. R. Kumita, E. A. A. Nollen, C. M. Dobson, and C. F. Kaminski, "A FRET sensor for non-invasive imaging of amyloid formation in vivo.," Chemphyschem : a European journal of chemical physics and physical chemistry, vol. 12, no. 3, pp. 673-80, Feb. 2011.
8. T. Murakami, S.-P. Yang, L. Xie, T. Kawano, D. Fu, A. Mukai, C. Bohm, F. Chen, J. Robertson, H. Suzuki, G. G. Tartaglia, M. Vendruscolo, G. S. Kaminski Schierle, F. T. S. Chan, A. Moloney, D. Crowther, C. F. Kaminski, M. Zhen, and P. St George-Hyslop, "ALS mutations in FUS cause neuronal dysfunction and death in Caenorhabditis elegans by a dominant gain-of-function mechanism.," Human molecular genetics, vol. 21, no. 1, pp. 1-9, Jan. 2012.
9. E. Betzig, G. H. Patterson, R. Sougrat, O. W. Lindwasser, S. Olenych, J. S. Bonifacino, M. W. Davidson, J. Lippincott-Schwartz, and H. F. Hess, "Imaging intracellular fluorescent proteins at nanometer resolution.," Science (New York, N.Y.), vol. 313, no. 5793, pp. 1642-5, Sep. 2006. (Pubitemid 44414039)
10. S. W. Hell and J. Wichmann, "Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy," Optics Letters, vol. 19, no. 11, p. 780, Jun. 1994.
11. S. T. Hess, T. P. K. Girirajan, and M. D. Mason, "Ultra-high resolution imaging by fluorescence photoactivation localization microscopy.," Biophysical journal, vol. 91, no. 11, pp. 4258-72, Dec. 2006.
12. M. Heilemann, S. van de Linde, M. Schüttpelz, R. Kasper, B. Seefeldt, A. Mukherjee, P. Tinnefeld, and M. Sauer, "Subdiffraction- resolution fluorescence imaging with conventional fluorescent probes.," Angewandte Chemie (International ed. in English), vol. 47, no. 33, pp. 6172-6, Jan. 2008.
13. H. Heise, W. Hoyer, S. Becker, O. C. Andronesi, D. Riedel, and M. Baldus, "Molecular-level secondary structure, polymorphism, and dynamics of full-length alpha-synuclein fibrils studied by solid-state NMR.," Proceedings of the National Academy of Sciences of the United States of America, vol. 102, no. 44, pp. 15871-6, Nov. 2005. (Pubitemid 41552835)
14. S. Thirunavukkuarasu, E. A. Jares-Erijman, and T. M. Jovin, "Multiparametric fluorescence detection of early stages in the amyloid protein aggregation of pyrene-labeled alpha-synuclein.," Journal of molecular biology, vol. 378, no. 5, pp. 1064-73, May 2008.
15. M. Erdelyi, E. Rees, D. Metcalf, G. S. K. Schierle, L. Dudas, J. Sinko, A. E. Knight, and C. F. Kaminski, "Correcting chromatic offset in multicolor super-resolution localization microscopy," Optics Express, vol. 21, no. 9, p. 10978, Apr. 2013.
16. G. S. Kaminski Schierle, S. van de Linde, M. Erdelyi, E. K. Esbjörner, T. Klein, E. Rees, C. W. Bertoncini, C. M. Dobson, M. Sauer, and C. F. Kaminski, "In situ measurements of the formation and morphology of intracellular β-amyloid fibrils by super-resolution fluorescence imaging.," Journal of the American Chemical Society, vol. 133, no. 33, pp. 12902-5, Aug. 2011.
17. M. Tokunaga, N. Imamoto, and K. Sakata-Sogawa, "Highly inclined thin illumination enables clear single-molecule imaging in cells.," Nature methods, vol. 5, no. 2, pp. 159-61, Mar. 2008. (Pubitemid 351181742)
18. E. J. Rees, M. Erdelyi, D. Pinotsi, A. Knight, D. Metcalf, and C. F. Kaminski, "Blind assessment of localisation microscope image resolution," Optical Nanoscopy, vol. 1, no. 1, p. 12, 2012.
19. S. Wolter, A. Löschberger, T. Holm, S. Aufmkolk, M.-C. Dabauvalle, S. van de Linde, and M. Sauer, "rapidSTORM: accurate, fast open-source software for localization microscopy.," Nature methods, vol. 9, no. 11, pp. 1040-1, Nov. 2012.
20. S. Wolter, M. Schüttpelz, M. Tscherepanow, S. VAN DE Linde, M. Heilemann, and M. Sauer, "Real-time computation of subdiffraction- resolution fluorescence images.," Journal of microscopy, vol. 237, no. 1, pp. 12-22, Jan. 2010.
21. R. E. Thompson, D. R. Larson, and W. W. Webb, "Precise nanometer localization analysis for individual fluorescent probes.," Biophysical journal, vol. 82, no. 5, pp. 2775-83, May 2002.
22. W. C. Duim, B. Chen, J. Frydman, and W. E. Moerner, "Sub-Diffraction Imaging of Huntingtin Protein Aggregates by Fluorescence Blink-Microscopy and Atomic Force Microscopy.," Chemphyschem : a European journal of chemical physics and physical chemistry, vol. 12, pp. 2387-2390, Jul. 2011.
23. S. J. Sahl, L. E. Weiss, W. C. Duim, J. Frydman, and W. E. Moerner, "Cellular inclusion bodies of mutant huntingtin exon 1 obscure small fibrillar aggregate species.," Scientific reports, vol. 2, p. 895, Jan. 2012.
24. M. J. Roberti, J. Fölling, M. S. Celej, M. Bossi, T. M. Jovin, and E. a Jares-Erijman, "Imaging nanometer-sized α-synuclein aggregates by superresolution fluorescence localization microscopy.," Biophysical journal, vol. 102, no. 7, pp. 1598-607, Apr. 2012.
25. J. Ries, V. Udayar, A. Soragni, S. Hornemann, K. P. R. Nilsson, R. Riek, C. Hock, H. Ewers, A. a Aguzzi, and L. Rajendran, "Superresolution Imaging of Amyloid Fibrils with Binding-Activated Probes.," ACS chemical neuroscience, Apr. 2013.
26. F. T. S. Chan, C. F. Kaminski, and G. S. Kaminski Schierle, "HomoFRET fluorescence anisotropy imaging as a tool to study molecular self-assembly in live cells.," Chemphyschem : a European journal of chemical physics and physical chemistry, vol. 12, no. 3, pp. 500-9, Feb. 2011.
27. G. S. K. Schierle, S. Van De Linde, M. Erdelyi, E. K. Esbj, T. Klein, E. Rees, C. W. Bertoncini, C. M. Dobson, M. Sauer, and C. F. Kaminski, "In Situ Measurements of the Formation and Morphology of," pp. 12902-12905, 2011.
28. M. Ahn, E. De Genst, G. S. Kaminski Schierle, M. Erdelyi, C. F. Kaminski, C. M. Dobson, and J. R. Kumita, "Analysis of the native structure, stability and aggregation of biotinylated human lysozyme.," PloS one, vol. 7, no. 11, p. e50192, Jan. 2012.
29. M. Goedert, R. Jakes, M. G. Spillantini, M. Hasegawa, M. J. Smith, and R. A. Crowther, "Assembly of microtubule-associated protein tau into Alzheimer-like filaments induced by sulphated glycosaminoglycans.," Nature, vol. 383, no. 6600, pp. 550-3, Oct. 1996. (Pubitemid 26346185)
30. B.W. Silverman, "Density Estimation for Statistics and Data Analysis", Chapman and Hall, New York (1986).