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Volumn 452, Issue 1, 2014, Pages 46-53

RNA isolation from loquat and other recalcitrant woody plants with high quality and yield

Author keywords

Fruits; Polyphenols; Polysaccharides; RNA isolation; Woody plants

Indexed keywords

FRUITS; HISTOLOGY; LITHIUM CHLORIDE; POLYSACCHARIDES; TISSUE;

EID: 84896473280     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2014.02.010     Document Type: Article
Times cited : (38)

References (47)
  • 1
    • 33646737648 scopus 로고    scopus 로고
    • Isolation of high-quality RNA from polyphenol-, polysaccharide-, and lipid-rich seeds
    • S. Birtic, and I. Kranner Isolation of high-quality RNA from polyphenol-, polysaccharide-, and lipid-rich seeds Phytochem. Anal. 17 2006 144 148
    • (2006) Phytochem. Anal. , vol.17 , pp. 144-148
    • Birtic, S.1    Kranner, I.2
  • 2
    • 33748351385 scopus 로고    scopus 로고
    • Extraction of high-quality, melanin-free RNA from Mycosphaerella fijiensis for cDNA preparation
    • DOI 10.1385/MB:34:1:45, PII MB34145
    • I. Islas-Flores, L. Peraza-Echeverría, B. Canto-Canché, and C.M. Rodríguez-García Extraction of high-quality, melanin-free RNA from Mycosphaerella fijiensis for cDNA preparation Mol. Biotechnol. 34 2006 45 50 (Pubitemid 44337219)
    • (2006) Molecular Biotechnology , vol.34 , Issue.1 , pp. 45-50
    • Islas-Flores, I.1    Peraza-Echeverria, L.2    Canto-Canche, B.3    Rodriguez-Garcia, C.M.4
  • 3
    • 33747136528 scopus 로고    scopus 로고
    • Evaluation of different RNA extraction methods for small quantities of plant tissue
    • M. Portillo, C. Fenoll, and C. Escobar Evaluation of different RNA extraction methods for small quantities of plant tissue Physiol. Plant. 128 2006 1 7
    • (2006) Physiol. Plant. , vol.128 , pp. 1-7
    • Portillo, M.1    Fenoll, C.2    Escobar, C.3
  • 5
    • 0026552444 scopus 로고
    • An efficient method for isolation of RNA and DNA from plants containing polyphenolics
    • M.E. John An efficient method for isolation of RNA and DNA from plants containing polyphenolics Nucleic Acids Res. 20 1992 2381
    • (1992) Nucleic Acids Res. , vol.20 , pp. 2381
    • John, M.E.1
  • 6
    • 28444435561 scopus 로고    scopus 로고
    • Rapid and reliable method of extracting DNA and RNA from sweetpotato, Ipomoea batatas (L). Lam
    • DOI 10.1007/s10529-005-3891-2
    • S.H. Kim, and T. Hamada Rapid and reliable method of extracting DNA and RNA from sweet potato (Ipomoea batatas (L). Lam.) Biotechnol. Lett. 27 2005 1841 1845 (Pubitemid 41740474)
    • (2005) Biotechnology Letters , vol.27 , Issue.23-24 , pp. 1841-1845
    • Kim, S.-H.1    Hamada, T.2
  • 7
    • 33746084833 scopus 로고    scopus 로고
    • A simple, rapid, and effective method for total RNA extraction from Lentinula edodes
    • J.H. Li, C.H. Tang, C.Y. Song, M.J. Chen, Z.Y. Feng, and Y.J. Pan A simple, rapid, and effective method for total RNA extraction from Lentinula edodes Biotechnol. Lett. 28 2006 1193 1197
    • (2006) Biotechnol. Lett. , vol.28 , pp. 1193-1197
    • Li, J.H.1    Tang, C.H.2    Song, C.Y.3    Chen, M.J.4    Feng, Z.Y.5    Pan, Y.J.6
  • 8
    • 33846496909 scopus 로고    scopus 로고
    • An efficient method for purifying high quality RNA from wheat pistils
    • DOI 10.1016/j.colsurfb.2006.10.024, PII S0927776506003432
    • A. Manickavelu, K. Kambara, K. Mishina, and T. Koba An efficient method for purifying high quality RNA from wheat pistils Colloid Surf. B 54 2007 254 258 (Pubitemid 46157098)
    • (2007) Colloids and Surfaces B: Biointerfaces , vol.54 , Issue.2 , pp. 254-258
    • Manickavelu, A.1    Kambara, K.2    Mishina, K.3    Koba, T.4
  • 10
    • 1542629764 scopus 로고    scopus 로고
    • Rapid high quality RNA preparation from pine seedlings
    • M.G. Claros, and F.M. Canovas Rapid high quality RNA preparation from pine seedlings Plant Mol. Biol. Rep. 16 1998 9 18
    • (1998) Plant Mol. Biol. Rep. , vol.16 , pp. 9-18
    • Claros, M.G.1    Canovas, F.M.2
  • 11
    • 33748714517 scopus 로고    scopus 로고
    • Efficient extraction of high-quality total RNA from various hop tissues (Humulus lupulus L.)
    • D.K. Jelle, R.R. Isabel, V.B. Erik, H. Arne, and D.K. Denis Efficient extraction of high-quality total RNA from various hop tissues (Humulus lupulus L.) Prep. Biochem. Biotechnol. 36 2006 355 362
    • (2006) Prep. Biochem. Biotechnol. , vol.36 , pp. 355-362
    • Jelle, D.K.1    Isabel, R.R.2    Erik, V.B.3    Arne, H.4    Denis, D.K.5
  • 12
    • 0033966048 scopus 로고    scopus 로고
    • Isolation and purification of functional total RNA from woody branches and needles of Sitka and white spruce
    • S.X. Wang, W. Hunter, and A. Plant Isolation and purification of functional total RNA from woody branches and needles of Sitka and white spruce Biotechniques 28 2000 292 296 (Pubitemid 30086047)
    • (2000) BioTechniques , vol.28 , Issue.2 , pp. 292-296
    • Wang, S.X.1    Hunter, W.2    Plant, A.3
  • 13
    • 0024118796 scopus 로고
    • A method for RNA isolation from marine macro-algae
    • X. Su, and A. Gibor A method for RNA isolation from marine macro-algae Anal. Biochem. 174 1988 650 657
    • (1988) Anal. Biochem. , vol.174 , pp. 650-657
    • Su, X.1    Gibor, A.2
  • 14
    • 0033409606 scopus 로고    scopus 로고
    • An Improved RNA Isolation Method for Plant Tissues Containing High Levels of Phenolic Compounds or Carbohydrates
    • R.A. Salzman, T. Fujita, K. Zhu-Salzman, P.M. Hasegawa, and R.A. Bressan An improved RNA isolation method for plant tissues containing high levels of phenolic compounds or carbohydrates Plant Mol. Biol. Rep. 17 1999 11 17 (Pubitemid 129640666)
    • (1999) Plant Molecular Biology Reporter , vol.17 , Issue.1 , pp. 11-17
    • Salzman, R.A.1    Fujita, T.2    Zhu-Salzman, K.3    Hasegawa, P.M.4    Bressan, R.A.5
  • 15
    • 0029761347 scopus 로고    scopus 로고
    • Modification of the acid guanidinium thiocyanate-phenol-chloroform method for nuclear RNA isolation
    • K. Vareli, and M. Frangou-Lazaridis Modification of the acid guanidinium thiocyanate-phenol-chloroform method for nuclear RNA isolation Biotechniques 21 1996 236 237 (Pubitemid 26271680)
    • (1996) BioTechniques , vol.21 , Issue.2 , pp. 236-237
    • Vareli, K.1    Frangou-Lazaridis, M.2
  • 16
    • 0028072757 scopus 로고
    • A modified hot borate method significantly enhances the yield of high-quality RNA from cotton (Gossypium hirsutum L.)
    • DOI 10.1006/abio.1994.1538
    • C.Y. Wan, and T.A. Wilkins A modified hot borate method significantly enhances the yield of high-quality RNA from cotton (Gossypium hirsutum L.) Anal. Biochem. 223 1994 7 12 (Pubitemid 24356684)
    • (1994) Analytical Biochemistry , vol.223 , Issue.1 , pp. 7-12
    • Wan, C.Y.1    Wilkins, T.A.2
  • 17
    • 79955365420 scopus 로고    scopus 로고
    • A modified hot borate method significantly enhances the yield of high-quality RNA from apple pulp
    • Y.X. Yao, L.L. Zhao, Y.J. Hao, and H. Zhai A modified hot borate method significantly enhances the yield of high-quality RNA from apple pulp J. Fruit Sci. 22 2005 737 740
    • (2005) J. Fruit Sci. , vol.22 , pp. 737-740
    • Yao, Y.X.1    Zhao, L.L.2    Hao, Y.J.3    Zhai, H.4
  • 18
    • 0025737251 scopus 로고
    • Isolation of functional RNA from plant tissues rich in phenolic compounds
    • A. Schneiderbauer, H. Sandermann Jr., and D. Ernst Isolation of functional RNA from plant tissues rich in phenolic compounds Anal. Biochem. 197 1991 91 95
    • (1991) Anal. Biochem. , vol.197 , pp. 91-95
    • Schneiderbauer, A.1    Sandermann, Jr.H.2    Ernst, D.3
  • 19
    • 51249169259 scopus 로고
    • Simple and efficient method for isolating RNA from pine trees
    • S. Chang, J. Puryear, and J. Cainey Simple and efficient method for isolating RNA from pine trees Plant Mol. Biol. Rep. 11 1993 113 116
    • (1993) Plant Mol. Biol. Rep. , vol.11 , pp. 113-116
    • Chang, S.1    Puryear, J.2    Cainey, J.3
  • 20
    • 0344773777 scopus 로고    scopus 로고
    • A simple protocol for RNA isolation from fruit trees containing high levels of polysaccharides and polyphenol compounds
    • C.G. Hu, C. Honda, M. Kita, Z. Zhang, T. Tsuda, and T. Moriguchi A simple protocol for RNA isolation from fruit trees containing high levels of polysaccharides and polyphenol compounds Plant Mol. Biol. Rep. 20 2002 69a-69g (Pubitemid 39239057)
    • (2002) Plant Molecular Biology Reporter , vol.20 , Issue.1
    • Hu, C.G.1    Honda, C.2    Kita, M.3    Zhang, Z.4    Tsuda, T.5    Moriguchi, T.6
  • 22
    • 1442357095 scopus 로고    scopus 로고
    • RNA isolation from highly viscous samples rich in polyphenols and polysaccharides
    • Y. Zeng, and T. Yang RNA isolation from highly viscous samples rich in polyphenols and polysaccharides Plant Mol. Biol. Rep. 20 2002 417a-417e (Pubitemid 39239017)
    • (2002) Plant Molecular Biology Reporter , vol.20 , Issue.4
    • Zeng, Y.1    Yang, T.2
  • 23
    • 84872961267 scopus 로고    scopus 로고
    • Efficient isolation of high-quality RNA from lotus Nelumbo nucifera ssp nucifera tissues
    • Y.J. Zhang, X.Y. Hao, Z.S. Liang, W.D. Ke, and H.B. Guo Efficient isolation of high-quality RNA from lotus Nelumbo nucifera ssp nucifera tissues Genet. Mol. Res. 12 2013 223 229
    • (2013) Genet. Mol. Res. , vol.12 , pp. 223-229
    • Zhang, Y.J.1    Hao, X.Y.2    Liang, Z.S.3    Ke, W.D.4    Guo, H.B.5
  • 24
    • 85027938512 scopus 로고    scopus 로고
    • A modified protocol for RNA extraction from different peach tissues suitable for gene isolation and real-time PCR analysis
    • Z. Tong, S. Qu, J. Zhang, F. Wang, J. Tao, Z. Gao, and Z. Zhang A modified protocol for RNA extraction from different peach tissues suitable for gene isolation and real-time PCR analysis Mol. Biotechnol. 50 2012 229 236
    • (2012) Mol. Biotechnol. , vol.50 , pp. 229-236
    • Tong, Z.1    Qu, S.2    Zhang, J.3    Wang, F.4    Tao, J.5    Gao, Z.6    Zhang, Z.7
  • 25
    • 33751234803 scopus 로고    scopus 로고
    • An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development
    • K.E. Reid, N. Olsson, J. Schlosser, F. Peng, and S.T. Lund An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development BMC Plant Biol. 6 2006 27
    • (2006) BMC Plant Biol. , vol.6 , pp. 27
    • Reid, K.E.1    Olsson, N.2    Schlosser, J.3    Peng, F.4    Lund, S.T.5
  • 26
    • 0033103798 scopus 로고    scopus 로고
    • Immunological and molecular comparison of polyphenol oxidase in Rosaceae fruit trees
    • DOI 10.1016/S0031-9422(98)00633-5, PII S0031942298006335
    • M. Haruta, M. Murata, H. Kadokura, and S. Homma Immunological and molecular comparison of polyphenol oxidase in Rosaceae fruit trees Phytochemistry 50 1999 1021 1025 (Pubitemid 29156247)
    • (1999) Phytochemistry , vol.50 , Issue.6 , pp. 1021-1025
    • Haruta, M.1    Murata, M.2    Kadokura, H.3    Homma, S.4
  • 28
    • 77955816318 scopus 로고    scopus 로고
    • Modulation of flavonoid biosynthetic pathway genes and anthocyanins due to virus infection in grapevine (Vitis vinifera L.) leaves
    • L.R. Gutha, L.F. Casassa, J.F. Harbertson, and R.A. Naidu Modulation of flavonoid biosynthetic pathway genes and anthocyanins due to virus infection in grapevine (Vitis vinifera L.) leaves BMC Plant Biol. 10 2010 187
    • (2010) BMC Plant Biol. , vol.10 , pp. 187
    • Gutha, L.R.1    Casassa, L.F.2    Harbertson, J.F.3    Naidu, R.A.4
  • 29
    • 84867996752 scopus 로고    scopus 로고
    • High-throughput sequence analysis of small RNAs in grapevine (Vitis vinifera L.) affected by grapevine leafroll disease
    • O.J. Alabi, Y. Zheng, G. Jagadeeswaran, R. Sunkar, and R.A. Naidu High-throughput sequence analysis of small RNAs in grapevine (Vitis vinifera L.) affected by grapevine leafroll disease Mol. Plant Pathol. 13 2012 1060 1076
    • (2012) Mol. Plant Pathol. , vol.13 , pp. 1060-1076
    • Alabi, O.J.1    Zheng, Y.2    Jagadeeswaran, G.3    Sunkar, R.4    Naidu, R.A.5
  • 30
    • 31044437014 scopus 로고    scopus 로고
    • Modified cyclodextrins are chemically defined glucan inducers of defense responses in grapevine cell cultures
    • R. Bru, S. Sellés, J. Casado-Vela, S. Belchí-Navarro, and M.A. Pedreño Modified cyclodextrins are chemically defined glucan inducers of defense responses in grapevine cell cultures J. Agric. Food Chem. 54 2006 65 71
    • (2006) J. Agric. Food Chem. , vol.54 , pp. 65-71
    • Bru, R.1    Sellés, S.2    Casado-Vela, J.3    Belchí-Navarro, S.4    Pedreño, M.A.5
  • 31
    • 70349583377 scopus 로고    scopus 로고
    • Synergistic effect of methyljasmonate and cyclodextrin on stilbene biosynthesis pathway gene expression and resveratrol production in Monastrell grapevine cell cultures
    • D. Lijavetzky, L. Almagro, S. Belchi-Navarro, J.M. Martínez- Zapater, R. Bru, and M.A. Pedreño Synergistic effect of methyljasmonate and cyclodextrin on stilbene biosynthesis pathway gene expression and resveratrol production in Monastrell grapevine cell cultures BMC Res. Notes 1 2008 132
    • (2008) BMC Res. Notes , vol.1 , pp. 132
    • Lijavetzky, D.1    Almagro, L.2    Belchi-Navarro, S.3    Martínez-Zapater, J.M.4    Bru, R.5    Pedreño, M.A.6
  • 32
    • 0037443921 scopus 로고    scopus 로고
    • RNA isolation from plant tissues rich in polysaccharides
    • DOI 10.1016/S0003-2697(02)00689-9
    • A.D. Sharma, P.K. Gill, and P. Singh RNA isolation from plant tissues rich in polysaccharides Anal. Biochem. 314 2003 319 321 (Pubitemid 36315915)
    • (2003) Analytical Biochemistry , vol.314 , Issue.2 , pp. 319-321
    • Sharma, A.D.1    Gill, P.K.2    Singh, P.3
  • 33
    • 79955404592 scopus 로고    scopus 로고
    • A study of the methods for total RNA extraction from different tissues of banana
    • W. Wang, G.L. Liang, and J.H. Xie A study of the methods for total RNA extraction from different tissues of banana J. Southwest China Normal Univ. 32 2007 62 68
    • (2007) J. Southwest China Normal Univ. , vol.32 , pp. 62-68
    • Wang, W.1    Liang, G.L.2    Xie, J.H.3
  • 34
    • 67649904560 scopus 로고    scopus 로고
    • An improved procedure for nuclear DNA isolation from Eriobotrya plants and its application
    • Y.H. Liu, X.H. Yang, S.Q. Lin, G.B. Hu, and C.M. Liu An improved procedure for nuclear DNA isolation from Eriobotrya plants and its application J. Fruit Sci. 22 2005 182 185
    • (2005) J. Fruit Sci. , vol.22 , pp. 182-185
    • Liu, Y.H.1    Yang, X.H.2    Lin, S.Q.3    Hu, G.B.4    Liu, C.M.5
  • 35
    • 0442309693 scopus 로고    scopus 로고
    • A simple and efficient protocol for isolation of functional RNA from plant tissues rich in secondary metabolites
    • E. Kiefer, W. Heller, and D. Ernst A simple and efficient protocol for isolation of functional RNA from plant tissues rich in secondary metabolites Plant Mol. Biol. Rep. 18 2000 33 39
    • (2000) Plant Mol. Biol. Rep. , vol.18 , pp. 33-39
    • Kiefer, E.1    Heller, W.2    Ernst, D.3
  • 36
    • 0003903343 scopus 로고    scopus 로고
    • thirdrd ed. Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
    • J. Sambrook, and D.W. Russell Molecular Cloning: A Laboratory Manual thirdrd ed. 2006 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY pp. 518-525
    • (2006) Molecular Cloning: A Laboratory Manual , pp. 518-525
    • Sambrook, J.1    Russell, D.W.2
  • 38
    • 73249122860 scopus 로고    scopus 로고
    • Extraction of high quality RNA from polysaccharide matrices using cetlytrimethylammonium bromide
    • L. Wang, and J.P. Stegemann Extraction of high quality RNA from polysaccharide matrices using cetlytrimethylammonium bromide Biomaterials 31 2010 1612 1618
    • (2010) Biomaterials , vol.31 , pp. 1612-1618
    • Wang, L.1    Stegemann, J.P.2
  • 39
    • 0030747352 scopus 로고    scopus 로고
    • A DNA extraction protocol from various tissues in woody species
    • F.S. Chen, S.K. Brown, and N.F. Weeden A DNA extraction protocol from various tissues in woody species HortScience 32 1997 921 922
    • (1997) HortScience , vol.32 , pp. 921-922
    • Chen, F.S.1    Brown, S.K.2    Weeden, N.F.3
  • 40
    • 0025102514 scopus 로고
    • RNA and DNA isolation from recalcitrant plant tissues
    • S.S. Baker, C.L. Rugh, and J.C. Kamalay RNA and DNA isolation from recalcitrant plant tissues Biotechniques 9 1990 268 272 (Pubitemid 20281278)
    • (1990) BioTechniques , vol.9 , Issue.3 , pp. 268-272
    • Baker, S.S.1    Rugh, C.L.2    Kamalay, J.C.3
  • 41
    • 0442327926 scopus 로고    scopus 로고
    • Isolation and Purification of Functional Total RNA from Blue-grained Wheat Endosperm Tissues Containing High Levels of Starches and Flavonoids
    • J.W. Gao, J.Z. Liu, B. Li, and S.Z. Li Isolation and purification of functional total RNA from blue-grained wheat endosperm tissues containing high levels of starches and flavonoids Plant Mol. Biol. Rep. 19 2001 185 186 (Pubitemid 33299440)
    • (2001) Plant Molecular Biology Reporter , vol.19 , Issue.2 , pp. 185-186
    • Gao, J.1    Liu, J.2    Li, B.3    Li, Z.4
  • 43
    • 21344490146 scopus 로고
    • Isolation of RNA from apple skin
    • D. Mitra, and A. Kootstra Isolation of RNA from apple skin Plant Mol. Biol. Rep. 11 1993 326 332
    • (1993) Plant Mol. Biol. Rep. , vol.11 , pp. 326-332
    • Mitra, D.1    Kootstra, A.2
  • 44
    • 0029744064 scopus 로고    scopus 로고
    • A method to isolate cDNA-quality RNA from adult conifer needles and a psbA cDNA from Norway spruce
    • M. Relle, A. Sutter, and A. Wild A method to isolate cDNA-quality RNA from adult conifer needles and a psbA cDNA from Norway spruce J. Plant Physiol. 149 1996 225 228 (Pubitemid 26312177)
    • (1996) Journal of Plant Physiology , vol.149 , Issue.1-2 , pp. 225-228
    • Relle, M.1    Sutter, A.2    Wild, A.3
  • 46
    • 33749755051 scopus 로고    scopus 로고
    • Extraction of total RNA from melon mesocarp tissue
    • K.C. Shellie, R.D. Meyer, and T.E. Mirkov Extraction of total RNA from melon mesocarp tissue HortScience 32 1997 134 (Pubitemid 27201050)
    • (1997) HortScience , vol.32 , Issue.1 , pp. 134
    • Shellieand, K.C.1    Meyer, R.D.2    Erik Mirkov, T.3
  • 47
    • 75949106981 scopus 로고    scopus 로고
    • Evolution of phenolics and polyphenol oxidase isoenzymes in relation to physical-chemical parameters during loquat (Eriobotrya japonica cv. Algerie) fruit development and ripening
    • J. Casado, S. Sellés, I. Gómez-Lucas, R. Bru, Evolution of phenolics and polyphenol oxidase isoenzymes in relation to physical-chemical parameters during loquat (Eriobotrya japonica cv. Algerie) fruit development and ripening, Options Méditerranéennes 58 (2004) 187-190.
    • (2004) Options Méditerranéennes , vol.58 , pp. 187-190
    • Casado, J.1


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