A heritable antiviral RNAi response limits orsay virus infection in Caenorhabditis elegans N2

PLoS ONE

Volumn 9, Issue 2, 2014, Pages

  Sterken, Mark G ^a   Snoek, L Basten ^a   Bosman, Kobus J ^a   Daamen, Jikke ^a   Riksen, Joost A G ^a   Bakker, Jaap ^a   Pijlman, Gorben P ^a   Kammenga, Jan E ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED RNA; PRIMER DNA; VIRUS RNA;

ARTICLE; BIOASSAY; CAENORHABDITIS ELEGANS; CONTROLLED STUDY; DISEASE PREDISPOSITION; GENOTYPE; INHERITANCE; LARVAL STAGE; MOLECULAR RECOGNITION; NEMATODE LIFE CYCLE STAGE; NONHUMAN; ORSAY VIRUS INFECTION; PROCESS DEVELOPMENT; PROGENY; RNA INTERFERENCE; VIRUS CELL INTERACTION; VIRUS INFECTION; VIRUS LOAD; VIRUS REPLICATION; VIRUS RESISTANCE; VIRUS VIRULENCE; WILD TYPE; ANALYSIS OF VARIANCE; ANIMAL; DISEASE MODEL; GENETICS; IMMUNOLOGY; NODAVIRUS; PATHOGENICITY; PHYSIOLOGY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA VIRUS INFECTION; VIROLOGY;

ANALYSIS OF VARIANCE; ANIMALS; CAENORHABDITIS ELEGANS; DISEASE MODELS, ANIMAL; DNA PRIMERS; INHERITANCE PATTERNS; NODAVIRIDAE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA INTERFERENCE; RNA VIRUS INFECTIONS; RNA, VIRAL; VIRUS REPLICATION;

EID: 84896079180     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0089760     Document Type: Article

References (37)

1. Kirienko NV, Mani K, Fay DS (2010) Cancer models in Caenorhabditis elegans. Dev Dyn 239: 1413-1448.
2. Kenyon CJ (2010) The genetics of ageing. Nature 464: 504-512.
3. Snoek LB, Sterken MG, Volkers RJ, Klatter M, Bosman KJ, et al. (2014) A rapid and massive gene expression shift marking adolescent transition in C. elegans. Sci Rep 4: 3912.
4. Jager T, Alvarez OA, Kammenga JE, Kooijman SALM (2005) Modelling nematode life cycles using dynamic energy budgets. Functional Ecology 19: 136-144. (Pubitemid 40483079)
5. Marsh EK, May RC (2012) Caenorhabditis elegans, a model organism for investigating immunity. Appl Environ Microbiol 78: 2075-2081.
6. Franz CJ, Renshaw H, Frezal L, Jiang Y, Félix M-A, et al. (2014) Orsay, Santeuil and Le Blanc viruses primarily infect intestinal cells in Caenorhabditis nematodes. Virology 448: 255-264.
7. Felix MA, Ashe A, Piffaretti J, Wu G, Nuez I, et al. (2011) Natural and experimental infection of Caenorhabditis nematodes by novel viruses related to nodaviruses. PLoS biology 9: e1000586.
8. Franz CJ, Zhao G, Felix MA, Wang D (2012) Complete genome sequence of Le Blanc virus, a third Caenorhabditis nematode-infecting virus. J Virol 86: 11940.
9. Andersen EC, Gerke JP, Shapiro JA, Crissman JR, Ghosh R, et al. (2012) Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity. Nat Genet 44: 285-290.
10. Volkers RJ, Snoek LB, van Hellenberg Hubar CJ, Coopman R, Chen W, et al. (2013) Gene-environment and protein degradation signatures characterize genomic and phenotypic diversity in wild Caenorhabditis elegans populations. BMC Biol 11: 93.
11. Kiontke KC, Felix MA, Ailion M, Rockman MV, Braendle C, et al. (2011) A phylogeny and molecular barcodes for Caenorhabditis, with numerous new species from rotting fruits. BMC Evol Biol 11: 339.
12. Grishkevich V, Ben-Elazar S, Hashimshony T, Schott DH, Hunter CP, et al. (2012) A genomic bias for genotype-environment interactions in C. elegans. Mol Syst Biol 8: 587.
13. Elvin M, Snoek LB, Frejno M, Klemstein U, Kammenga JE, et al. (2011) A fitness assay for comparing RNAi effects across multiple C. elegans genotypes. BMC Genomics 12: 510.
14. Felix MA, Braendle C (2010) The natural history of Caenorhabditis elegans. Curr Biol 20: R965-969.
15. Pujol N, Zugasti O, Wong D, Couillault C, Kurz CL, et al. (2008) Anti-fungal innate immunity in C. elegans is enhanced by evolutionary diversification of antimicrobial peptides. PLoS Pathog 4: e1000105.
16. Kammenga JE, Phillips PC, De Bono M, Doroszuk A (2008) Beyond induced mutants: using worms to study natural variation in genetic pathways. Trends Genet 24: 178-185.
17. Viñuela A, Snoek LB, Riksen JAG, Kammenga JE (2010) Genome-wide gene expression regulation as a function of genotype and age in C-elegans. Genome Research 20: 929-937.
18. Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, et al. (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391: 806-811. (Pubitemid 28099681)
19. Lu R, Maduro M, Li F, Li HW, Broitman-Maduro G, et al. (2005) Animal virus replication and RNAi-mediated antiviral silencing in Caenorhabditis elegans. Nature 436: 1040-1043. (Pubitemid 41191689)
20. Wilkins C, Dishongh R, Moore SC, Whitt MA, Chow M, et al. (2005) RNA interference is an antiviral defence mechanism in Caenorhabditis elegans. Nature 436: 1044-1047. (Pubitemid 41191690)
21. Schott DH, Cureton DK, Whelan SP, Hunter CP (2005) An antiviral role for the RNA interference machinery in Caenorhabditis elegans. Proc Natl Acad Sci U S A 102: 18420-18424. (Pubitemid 43011241)
22. Rechavi O, Minevich G, Hobert O (2011) Transgenerational inheritance of an acquired small RNA-based antiviral response in C. elegans. Cell 147: 1248-1256.
23. Sarkies P, Ashe A, Le Pen J, McKie MA, Miska EA (2013) Competition between virus-derived and endogenous small RNAs regulates gene expression in Caenorhabditis elegans. Genome Res 23: 1258-1270.
24. Ashe A, Belicard T, Le Pen J, Sarkies P, Frezal L, et al. (2013) A deletion polymorphism in the Caenorhabditis elegans RIG-I homolog disables viral RNA dicing and antiviral immunity. Elife 2: e00994.
25. Lu R, Yigit E, Li WX, Ding SW (2009) An RIG-I-Like RNA helicase mediates antiviral RNAi downstream of viral siRNA biogenesis in Caenorhabditis elegans. PLoS Pathog 5: e1000286.
26. Guo XY, Zhang R, Wang J, Ding SW, Lu R (2013) Homologous RIG-I-like helicase proteins direct RNAi-mediated antiviral immunity in C. elegans by distinct mechanisms. Proceedings of the National Academy of Sciences of the United States of America 110: 16085-16090.
27. Brenner S (1974) Genetics of Caenorhabditis-Elegans. Genetics 77: 71-94.
28. Emmons SW, Klass MR, Hirsh D (1979) Analysis of the Constancy of DNA Sequences during Development and Evolution of the Nematode Caenorhabditis- Elegans. Proc Natl Acad Sci U S A 76: 1333-1337. (Pubitemid 9143734)
29. Le Novere N (2001) MELTING, computing the melting temperature of nucleic acid duplex. Bioinformatics 17: 1226-1227.
30. Bates DM, Chambers JM (1992) Nonlinear models. In: Chambers JM, Hastie TJ, editors. Statistical Models in S. London: WAdsworth & Brooks/Cole.
31. Tijsterman M, Ketting RF, Okihara KL, Sijen T, Plasterk RH (2002) RNA helicase MUT-14-dependent gene silencing triggered in C. elegans by short antisense RNAs. Science 295: 694-697. (Pubitemid 34111831)
32. Sundaram P, Han W, Cohen N, Echalier B, Albin J, et al. (2008) Caenorhabditis elegans ABCRNAi transporters interact genetically with rde-2 and mut-7. Genetics 178: 801-814. (Pubitemid 351398794)
33. Blanchard D, Parameswaran P, Lopez-Molina J, Gent J, Saynuk JF, et al. (2011) On the nature of in vivo requirements for rde-4 in RNAi and developmental pathways in C. elegans. RNA Biology 8: 458-467.
34. Parrish S, Fire A (2001) Distinct roles for RDE-1 and RDE-4 during RNA interference in Caenorhabditis elegans. RNA 7: 1397-1402. (Pubitemid 32973225)
35. Grishok A (2000) Genetic Requirements for Inheritance of RNAi in C. elegans. Science 287: 2494-2497.
36. Vastenhouw NL, Brunschwig K, Okihara KL, Muller F, Tijsterman M, et al. (2006) Gene expression: long-term gene silencing by RNAi. Nature 442: 882. (Pubitemid 44285937)
37. Altun ZF, Hall DH (2009) Alimentary system, intestine. In: Herndon LA, editor.