Accurate sodium bisulfite sequencing in plants

Epigenetics

Volumn 5, Issue 1, 2010, Pages 47-49

  Hhenderson, Ian R ^a   Chan, Simon R ^b   Cao, Xiaofeng ^c   Johnson, Lianna ^d   Jacobsen, Steven E ^d  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Bisulfite; DNA methylation; Plants; Silencing

Indexed keywords

BISULFITE; CYTOSINE;

ARTICLE; CLONE; DNA DETERMINATION; DNA METHYLATION; DNA MODIFICATION; DNA SEQUENCE; GENE AMPLIFICATION; NONHUMAN; PLANT;

EUKARYOTA;

EID: 77449144498     PISSN: 15592294     EISSN: 15592308     Source Type: Journal    
DOI: 10.4161/epi.5.1.10560     Document Type: Article

References (9)

1. Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, et al. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 2008; 452:215-9.
2. Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, et al. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 2008; 133:523-36.
3. Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, et al. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell 2006; 126:1189-201.
4. Zilberman D, Gehring M, Tran RK, Ballinger T, Henikoff S. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat Genet 2007; 39:61-9.
5. Clark SJ, Harrison J, Paul CL, Frommer M. High sensitivity mapping of methylated cytosines. Nucleic Acids Res 1994; 22:2990-7.
6. Frommer M, McDonald LE, Millar DS, Collis CM, Watt F, Grigg GW, et al. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc Natl Acad Sci USA 1992; 89:1827-31.
7. Henderson IR, Jacobsen SE. Epigenetic inheritance in plants. Nature 2007; 447:418-24.
8. McClelland M, Nelson M, Raschke E. Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases. Nucleic Acids Res 1994; 22:3640-59.
9. Laird CD, Pleasant ND, Clark AD, Sneeden JL, Hassan KM, Manley NC, et al. Hairpin-bisulfite PCR: assessing epigenetic methylation patterns on complementary strands of individual DNA molecules. Proc Natl Acad Sci USA 2004; 101:204-9.