-
1
-
-
79956197636
-
Delayed repair of radiation induced clustered DNA damage: Friend or foe?
-
L.J. Eccles, P. O'Neill, and M.E. Lomax Delayed repair of radiation induced clustered DNA damage: friend or foe? Mutat Res 711 2011 134 141
-
(2011)
Mutat Res
, vol.711
, pp. 134-141
-
-
Eccles, L.J.1
O'Neill, P.2
Lomax, M.E.3
-
2
-
-
79956225907
-
Clustered DNA lesion repair in eukaryotes: Relevance to mutagenesis and cell survival
-
E. Sage, and L. Harrison Clustered DNA lesion repair in eukaryotes: relevance to mutagenesis and cell survival Mutat Res 711 2011 123 133
-
(2011)
Mutat Res
, vol.711
, pp. 123-133
-
-
Sage, E.1
Harrison, L.2
-
3
-
-
0027973491
-
The complexity of DNA damage: Relevance to biological consequences
-
J.F. Ward The complexity of DNA damage: relevance to biological consequences Int J Radiat Biol 66 1994 427 432
-
(1994)
Int J Radiat Biol
, vol.66
, pp. 427-432
-
-
Ward, J.F.1
-
4
-
-
0027976408
-
Initial events in the cellular effects of ionizing radiations: Clustered damage in DNA
-
D.T. Goodhead Initial events in the cellular effects of ionizing radiations: clustered damage in DNA Int J Radiat Biol 65 1994 7 17
-
(1994)
Int J Radiat Biol
, vol.65
, pp. 7-17
-
-
Goodhead, D.T.1
-
5
-
-
0036249832
-
Formation of modified DNA bases in cells exposed either to gamma radiation or to high-LET particles
-
J.-P. Pouget, S. Frelon, J.-L. Ravanat, I. Testard, F. Odin, and J. Cadet Formation of modified DNA bases in cells exposed either to gamma radiation or to high-LET particles Radiat Res 157 2002 589 595
-
(2002)
Radiat Res
, vol.157
, pp. 589-595
-
-
Pouget, J.-P.1
Frelon, S.2
Ravanat, J.-L.3
Testard, I.4
Odin, F.5
Cadet, J.6
-
6
-
-
51649086880
-
Oxidatively generated damage to the guanine moiety of DNA: Mechanic aspects and formation in cells
-
J. Cadet, T. Douki, and J.-L. Ravanat Oxidatively generated damage to the guanine moiety of DNA: mechanic aspects and formation in cells Acc Chem Res 41 2008 1075 1083
-
(2008)
Acc Chem Res
, vol.41
, pp. 1075-1083
-
-
Cadet, J.1
Douki, T.2
Ravanat, J.-L.3
-
7
-
-
0033792418
-
High-performance liquid chromatography-tandem mass spectrometry measurement of radiation-induced base damage to isolated and cellular DNA
-
S. Frelon, T. Douki, J.-L. Ravanat, J.P. Pouget, C. Tornabene, and J. Cadet High-performance liquid chromatography-tandem mass spectrometry measurement of radiation-induced base damage to isolated and cellular DNA Chem Res Toxicol 13 2000 1002 1010
-
(2000)
Chem Res Toxicol
, vol.13
, pp. 1002-1010
-
-
Frelon, S.1
Douki, T.2
Ravanat, J.-L.3
Pouget, J.P.4
Tornabene, C.5
Cadet, J.6
-
8
-
-
0034733694
-
Base excision repair in yeast and mammals
-
A. Memisoglu, and L. Samson Base excision repair in yeast and mammals Mutat Res 451 2000 39 51
-
(2000)
Mutat Res
, vol.451
, pp. 39-51
-
-
Memisoglu, A.1
Samson, L.2
-
10
-
-
77951977494
-
Role of oxidatively induced DNA lesions in human pathogenesis
-
O.A. Sedelnikova, C.E. Redon, J.S. Dickey, A.J. Nakamura, A.G. Georgakilas, and W.M. Bonner Role of oxidatively induced DNA lesions in human pathogenesis Mutat Res 704 2010 152 159
-
(2010)
Mutat Res
, vol.704
, pp. 152-159
-
-
Sedelnikova, O.A.1
Redon, C.E.2
Dickey, J.S.3
Nakamura, A.J.4
Georgakilas, A.G.5
Bonner, W.M.6
-
11
-
-
62549083858
-
The yield, processing, and biological consequences of clustered DNA damage induced by ionizing radiation
-
N. Shikazono, M. Noguchi, K. Fujii, A. Urushibara, and A. Yokoya The yield, processing, and biological consequences of clustered DNA damage induced by ionizing radiation J Radiat Res 50 2009 27 36
-
(2009)
J Radiat Res
, vol.50
, pp. 27-36
-
-
Shikazono, N.1
Noguchi, M.2
Fujii, K.3
Urushibara, A.4
Yokoya, A.5
-
12
-
-
0035912756
-
Abortive base-excision repair of radiation-induced clustered DNA lesions in Escherichia coli
-
J.O. Blaisdell, and S.S. Wallace Abortive base-excision repair of radiation-induced clustered DNA lesions in Escherichia coli Proc Natl Acad Sci U S A 98 2001 7426 7430
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 7426-7430
-
-
Blaisdell, J.O.1
Wallace, S.S.2
-
13
-
-
0042161840
-
Repair of clustered uracil DNA damages in Escherichia coli
-
D.I. D'Souza, and L. Harrison Repair of clustered uracil DNA damages in Escherichia coli Nucleic Acids Res 31 2003 4573 4581
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4573-4581
-
-
D'Souza, D.I.1
Harrison, L.2
-
14
-
-
32644472468
-
Closely opposed apurinic/apyrimidinic sites are converted to double strand breaks in Escherichia coli even in the absence of exonuclease III, endonuclease IV, nucleotide excision repair and AP lyase cleavage
-
L. Harrison, K.L. Brame, L.E. Geltz, and A.M. Landry Closely opposed apurinic/apyrimidinic sites are converted to double strand breaks in Escherichia coli even in the absence of exonuclease III, endonuclease IV, nucleotide excision repair and AP lyase cleavage DNA Repair 5 2006 324 335
-
(2006)
DNA Repair
, vol.5
, pp. 324-335
-
-
Harrison, L.1
Brame, K.L.2
Geltz, L.E.3
Landry, A.M.4
-
15
-
-
2542637919
-
Processing of clustered DNA damage generates additional DSB in mammalian cells post-irradiation
-
M. Gulston, C. de Lara, T. Jenner, E. Davis, and P. O'Neill Processing of clustered DNA damage generates additional DSB in mammalian cells post-irradiation Nucleic Acids Res 32 2004 1602 1609
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1602-1609
-
-
Gulston, M.1
De Lara, C.2
Jenner, T.3
Davis, E.4
O'Neill, P.5
-
16
-
-
50849105384
-
DNA repair of clustered lesions in mammalian cells: Involvement of non homologous end-joining
-
S. Malyarchuk, R. Castore, and L. Harrison DNA repair of clustered lesions in mammalian cells: involvement of non homologous end-joining Nucleic Acids Res 36 2008 4872 4882
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 4872-4882
-
-
Malyarchuk, S.1
Castore, R.2
Harrison, L.3
-
17
-
-
64549162745
-
The formation of double-strand breaks at multiply damaged sites is driven by the kinetics of excision/incision at base damage in eukaryotic cells
-
S.G. Kozmin, Y. Sedletska, A. Reynaud-Angelin, D. Gasparutto, and E. Sage The formation of double-strand breaks at multiply damaged sites is driven by the kinetics of excision/incision at base damage in eukaryotic cells Nucleic Acids Res 37 2009 1767 1777
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1767-1777
-
-
Kozmin, S.G.1
Sedletska, Y.2
Reynaud-Angelin, A.3
Gasparutto, D.4
Sage, E.5
-
18
-
-
0035873875
-
Recognition and kinetics for excision of a base lesion within clustered DNA damage by the Escherichia coli proteins Fpg and Nth
-
M.-H. David-Cordonnier, J. Laval, and P. O'Neill Recognition and kinetics for excision of a base lesion within clustered DNA damage by the Escherichia coli proteins Fpg and Nth Biochemistry 40 2001 5738 5746
-
(2001)
Biochemistry
, vol.40
, pp. 5738-5746
-
-
David-Cordonnier, M.-H.1
Laval, J.2
O'Neill, P.3
-
19
-
-
0032788298
-
In vitro repair of synthetic ionizing radiation-induced multiply damaged DNA sites
-
L. Harrison, Z. Hatahet, and S.S. Wallace In vitro repair of synthetic ionizing radiation-induced multiply damaged DNA sites J Mol Biol 290 1999 667 684
-
(1999)
J Mol Biol
, vol.290
, pp. 667-684
-
-
Harrison, L.1
Hatahet, Z.2
Wallace, S.S.3
-
20
-
-
19644391375
-
Molecular dynamics simulation of clustered DNA damage sites containing 8-oxoguanine and abasic site
-
H. Fujimoto, M. Pinak, T. Neomoto, P. O'Neill, E. Kume, and K. Saito et al. Molecular dynamics simulation of clustered DNA damage sites containing 8-oxoguanine and abasic site J Comput Chem 26 2005 788 798
-
(2005)
J Comput Chem
, vol.26
, pp. 788-798
-
-
Fujimoto, H.1
Pinak, M.2
Neomoto, T.3
O'Neill, P.4
Kume, E.5
Saito, K.6
-
21
-
-
56249148167
-
NMR solution structures of bistranded abasic site lesions in DNA
-
R.D. Hazel, K. Tian, and C. de los Santos NMR solution structures of bistranded abasic site lesions in DNA Biochemistry 47 2008 11909 11919
-
(2008)
Biochemistry
, vol.47
, pp. 11909-11919
-
-
Hazel, R.D.1
Tian, K.2
De Los Santos, C.3
-
22
-
-
0035957519
-
NMR characterization of clustered bistrand abasic site lesions: Effect of orientation on their solution structure
-
Z. Lin, and C. de los Santos NMR characterization of clustered bistrand abasic site lesions: effect of orientation on their solution structure J Mol Biol 308 2001 341 352
-
(2001)
J Mol Biol
, vol.308
, pp. 341-352
-
-
Lin, Z.1
De Los Santos, C.2
-
23
-
-
0002822992
-
Resonance assignments and structure determination in nucleic acid
-
John Wiley & Sons Wiley-Interscience New York
-
K. Wüthrich Resonance assignments and structure determination in nucleic acid John Wiley & Sons NMR of proteins and nucleic acids 1986 Wiley-Interscience New York 203
-
(1986)
NMR of Proteins and Nucleic Acids
, pp. 203
-
-
Wüthrich, K.1
-
24
-
-
0025854831
-
NMR studies of a DNA containing 8-hydroxydeoxyguanosine
-
Y. Oda, S. Uesugi, M. Ikehara, S. Nishimura, Y. Kawase, and H. Ishikawa et al. NMR studies of a DNA containing 8-hydroxydeoxyguanosine Nucleic Acids Res 19 1991 1407 1412
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 1407-1412
-
-
Oda, Y.1
Uesugi, S.2
Ikehara, M.3
Nishimura, S.4
Kawase, Y.5
Ishikawa, H.6
-
25
-
-
0029147479
-
Refined solution structure of a DNA heteroduplex containing an aldehydic abasic site
-
I. Goljer, S. Kumar, and P.H. Bolton Refined solution structure of a DNA heteroduplex containing an aldehydic abasic site J Biol Chem 270 1995 22980 22987
-
(1995)
J Biol Chem
, vol.270
, pp. 22980-22987
-
-
Goljer, I.1
Kumar, S.2
Bolton, P.H.3
-
26
-
-
38349188454
-
DNA oligonucleotides with A, T, G or C opposite an abasic site: Structure and dynamics
-
J. Chen, F.-Y. Dupradeau, D.A. Case, C.J. Turner, and J. Stubbe DNA oligonucleotides with A, T, G or C opposite an abasic site: structure and dynamics Nucleic Acids Res 36 2008 253 262
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 253-262
-
-
Chen, J.1
Dupradeau, F.-Y.2
Case, D.A.3
Turner, C.J.4
Stubbe, J.5
-
27
-
-
0033616830
-
2′-Deoxyribonolactone lesion in DNA: Refined solution structure determined by nuclear magnetic resonance and molecular modeling
-
M. Jourdan, J. Garcia, E. Defrancq, M. Kotera, and J. Lhomme 2′-Deoxyribonolactone lesion in DNA: refined solution structure determined by nuclear magnetic resonance and molecular modeling Biochemistry 38 1999 3985 3995
-
(1999)
Biochemistry
, vol.38
, pp. 3985-3995
-
-
Jourdan, M.1
Garcia, J.2
Defrancq, E.3
Kotera, M.4
Lhomme, J.5
-
29
-
-
58049201323
-
-
University of California, San Francisco San Francisco
-
D.A. Case, T.A. Darden, T.E. Cheatham, C.L. Simmerling, J. Wang, and R.E. Duke et al. AMBER 10 2008 University of California, San Francisco San Francisco
-
(2008)
AMBER 10
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
-
30
-
-
0028783875
-
Influence of the oxidatively damaged adduct 8-oxodeoxyguanosine on the conformation, energetics, and thermodynamic stability of a DNA duplex
-
G.E. Plum, A.P. Grollman, F. Johnson, and K.J. Breslauer Influence of the oxidatively damaged adduct 8-oxodeoxyguanosine on the conformation, energetics, and thermodynamic stability of a DNA duplex Biochemistry 34 1995 16148 16160
-
(1995)
Biochemistry
, vol.34
, pp. 16148-16160
-
-
Plum, G.E.1
Grollman, A.P.2
Johnson, F.3
Breslauer, K.J.4
-
31
-
-
80053430732
-
Characterization of DNA with an 8-oxoguanine modification
-
S.K. Singh, M.W. Szulik, M. Ganguly, I. Khutsishvili, M.P. Stone, and L.A. Marky et al. Characterization of DNA with an 8-oxoguanine modification Nucleic Acids Res 39 2011 6789 6801
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 6789-6801
-
-
Singh, S.K.1
Szulik, M.W.2
Ganguly, M.3
Khutsishvili, I.4
Stone, M.P.5
Marky, L.A.6
-
32
-
-
0032546530
-
Thermodynamic consequences of an abasic lesion in duplex DNA are strongly dependent on base sequence
-
C.A. Gelfand, G.E. Plum, A.P. Grollman, F. Johnson, and K.J. Breslauer Thermodynamic consequences of an abasic lesion in duplex DNA are strongly dependent on base sequence Biochemistry 37 1998 7321 7327
-
(1998)
Biochemistry
, vol.37
, pp. 7321-7327
-
-
Gelfand, C.A.1
Plum, G.E.2
Grollman, A.P.3
Johnson, F.4
Breslauer, K.J.5
-
34
-
-
26444558022
-
Dynamic behavior of DNA base pairs containing 8-oxoguanine
-
X. Cheng, C. Kelso, V. Hornak, C. de los Santos, A.P. Grollman, and C. Simmerling Dynamic behavior of DNA base pairs containing 8-oxoguanine J Am Chem Soc 127 2005 13906 13918
-
(2005)
J Am Chem Soc
, vol.127
, pp. 13906-13918
-
-
Cheng, X.1
Kelso, C.2
Hornak, V.3
De Los Santos, C.4
Grollman, A.P.5
Simmerling, C.6
-
35
-
-
0035881038
-
Solution structure of an oligonucleotide containing an abasic site: Evidence for an unusual deoxyribose conformation
-
S.T. Hoehn, C.J. Turner, and J. Stubbe Solution structure of an oligonucleotide containing an abasic site: evidence for an unusual deoxyribose conformation Nucleic Acids Res 29 2001 3413 3423
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3413-3423
-
-
Hoehn, S.T.1
Turner, C.J.2
Stubbe, J.3
-
36
-
-
0032546928
-
Structures of apurinic and apyrimidinic sites in duplex DNAs
-
R.D. Beger, and P.H. Bolton Structures of apurinic and apyrimidinic sites in duplex DNAs J Biol Chem 273 1998 15565 15573
-
(1998)
J Biol Chem
, vol.273
, pp. 15565-15573
-
-
Beger, R.D.1
Bolton, P.H.2
-
37
-
-
0001019746
-
Solution structure of a duplex DNA with an abasic site in a da tract
-
K.Y. Wang, S.A. Parker, I. Goljer, and P.H. Bolton Solution structure of a duplex DNA with an abasic site in a dA tract Biochemistry 36 1997 11629 11639
-
(1997)
Biochemistry
, vol.36
, pp. 11629-11639
-
-
Wang, K.Y.1
Parker, S.A.2
Goljer, I.3
Bolton, P.H.4
-
38
-
-
0006819344
-
A method for preparing oligodeoxynucleotides containing an apurinic site
-
K. Groebke, and C.J. Leumann A method for preparing oligodeoxynucleotides containing an apurinic site Helv Chim Acta 73 1990 608 617
-
(1990)
Helv Chim Acta
, vol.73
, pp. 608-617
-
-
Groebke, K.1
Leumann, C.J.2
-
39
-
-
19444382397
-
The CCPN data model for NMR spectroscopy: Development of a software pipeline
-
W.F. Vranken, W. Boucher, T.J. Stevens, R.H. Fogh, A. Pajon, and M. Llinas et al. The CCPN data model for NMR spectroscopy: development of a software pipeline Proteins 59 2005 687 696
-
(2005)
Proteins
, vol.59
, pp. 687-696
-
-
Vranken, W.F.1
Boucher, W.2
Stevens, T.J.3
Fogh, R.H.4
Pajon, A.5
Llinas, M.6
-
40
-
-
77954566051
-
The R.E.D. Tools: Advances in RESP and ESP charge derivation and force field library building
-
F.-Y. Dupradeau, A. Pigache, T. Zaffran, C. Savineau, R. Lelong, and N. Grivel et al. The R.E.D. tools: advances in RESP and ESP charge derivation and force field library building Phys Chem Chem Phys 12 2010 7821 7839
-
(2010)
Phys Chem Chem Phys
, vol.12
, pp. 7821-7839
-
-
Dupradeau, F.-Y.1
Pigache, A.2
Zaffran, T.3
Savineau, C.4
Lelong, R.5
Grivel, N.6
-
41
-
-
0029110156
-
Toward the accurate modeling of DNA? the importance of long-range electrostatics
-
D.M. York, W.T. Yang, H. Lee, T. Darden, and L.G. Pedersen Toward the accurate modeling of DNA? The importance of long-range electrostatics J Am Chem Soc 117 1995 5001 5002
-
(1995)
J Am Chem Soc
, vol.117
, pp. 5001-5002
-
-
York, D.M.1
Yang, W.T.2
Lee, H.3
Darden, T.4
Pedersen, L.G.5
-
42
-
-
70450261721
-
Conformational analysis of nucleic acids revisited: Curves +
-
R. Lavery, M. Moakher, J.H. Maddocks, D. Petkeviciute, and K. Zakrzewska Conformational analysis of nucleic acids revisited: Curves + Nucleic Acids Res 37 2009 5917 5929
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5917-5929
-
-
Lavery, R.1
Moakher, M.2
Maddocks, J.H.3
Petkeviciute, D.4
Zakrzewska, K.5
-
43
-
-
4444221565
-
UCSF Chimera - A visualization system for exploratory research and analysis
-
E.F. Pettersen, T.D. Goddard, C.C. Huang, G.S. Couch, D.M. Greenblatt, and E.C. Meng et al. UCSF Chimera - a visualization system for exploratory research and analysis J Comput Chem 25 2004 1605 1612
-
(2004)
J Comput Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
|