메뉴 건너뛰기




Volumn 31, Issue 15, 2003, Pages 4573-4581

Repair of clustered uracil DNA damages in Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

EXODEOXYRIBONUCLEASE III; LUCIFERASE; OLIGONUCLEOTIDE; URACIL; URACIL DNA GLYCOSYLTRANSFERASE; BACTERIAL DNA;

EID: 0042161840     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg493     Document Type: Article
Times cited : (65)

References (42)
  • 1
    • 0027976408 scopus 로고
    • Initial events in the cellular effects of ionizing radiations: Clustered damage in DNA
    • Goodhead,D.T. (1994) Initial events in the cellular effects of ionizing radiations: clustered damage in DNA. Int. J. Radiat. Biol., 65, 7-17.
    • (1994) Int. J. Radiat. Biol. , vol.65 , pp. 7-17
    • Goodhead, D.T.1
  • 2
    • 0023893971 scopus 로고
    • Effect of apurinic/apyrimidinic endonucleases and polyamines on DNA treated with bleomycin and neocarzinostatin: Specific formation and cleavage of closely opposed lesions in complementary strands
    • Povirk,L.F. and Houlgrave,C.W. (1988) Effect of apurinic/apyrimidinic endonucleases and polyamines on DNA treated with bleomycin and neocarzinostatin: specific formation and cleavage of closely opposed lesions in complementary strands. Biochemistry, 27, 3850-3857.
    • (1988) Biochemistry , vol.27 , pp. 3850-3857
    • Povirk, L.F.1    Houlgrave, C.W.2
  • 3
    • 0023240996 scopus 로고
    • Radiation and hydrogen peroxide induced free radical damage to DNA
    • Ward,J.F., Evans,J.W., Limoli,C.L. and Calabro-Jories,P.M. (1987) Radiation and hydrogen peroxide induced free radical damage to DNA. Cancer, 55, 105-112.
    • (1987) Cancer , vol.55 , pp. 105-112
    • Ward, J.F.1    Evans, J.W.2    Limoli, C.L.3    Calabro-Jories, P.M.4
  • 4
    • 0034678995 scopus 로고    scopus 로고
    • Tandem base lesions are generated by hydroxyl radical within isolated DNA in aerated aqueous solution
    • Bourdat,A.-G., Douki,T., Frelon,S., Gasparutto,D. and Cadet,J. (2000) Tandem base lesions are generated by hydroxyl radical within isolated DNA in aerated aqueous solution. J. Am. Chem. Soc., 122, 4549-4556.
    • (2000) J. Am. Chem. Soc. , vol.122 , pp. 4549-4556
    • Bourdat, A.-G.1    Douki, T.2    Frelon, S.3    Gasparutto, D.4    Cadet, J.5
  • 5
    • 0034636776 scopus 로고    scopus 로고
    • Clustered damages and total lesions induced in DNA by ionizing radiation: Oxidized bases and strand breaks
    • Sutherland,B.M., Bennett,P.V., Sidorkina,O. and Laval,J. (2000) Clustered damages and total lesions induced in DNA by ionizing radiation: oxidized bases and strand breaks. Biochemistry, 39, 8026-8031.
    • (2000) Biochemistry , vol.39 , pp. 8026-8031
    • Sutherland, B.M.1    Bennett, P.V.2    Sidorkina, O.3    Laval, J.4
  • 6
    • 0034602643 scopus 로고    scopus 로고
    • Clustered DNA damages induced in isolated DNA in human cells by low doses of ionizing radiation
    • Sutherland,B.M., Bennett,P.V., Sidorkina,O. and Laval,J. (2000) Clustered DNA damages induced in isolated DNA in human cells by low doses of ionizing radiation. Proc. Natl Acad. Sci. USA, 97, 103-108.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 103-108
    • Sutherland, B.M.1    Bennett, P.V.2    Sidorkina, O.3    Laval, J.4
  • 7
    • 0036682280 scopus 로고    scopus 로고
    • Clustered DNA damage induced by γ radiation in human fibroblasts (HF19), hamster (V79-4) cells and plasmid DNA is revealed as Fpg and Nth sensitive sites
    • Gulston,M., Fulford,J., Jenner,T., de Lara,C. and O'Neill,P. (2001) Clustered DNA damage induced by γ radiation in human fibroblasts (HF19), hamster (V79-4) cells and plasmid DNA is revealed as Fpg and Nth sensitive sites. Nucleic Acids Res., 30, 3464-3472.
    • (2001) Nucleic Acids Res. , vol.30 , pp. 3464-3472
    • Gulston, M.1    Fulford, J.2    Jenner, T.3    de Lara, C.4    O'Neill, P.5
  • 9
    • 0019413225 scopus 로고
    • Some biochemical consequences of the spatial distribution of ionizing radiation-produced free radicals
    • Ward,J.F. (1981) Some biochemical consequences of the spatial distribution of ionizing radiation-produced free radicals. Radiat. Res., 86, 185-195.
    • (1981) Radiat. Res. , vol.86 , pp. 185-195
    • Ward, J.F.1
  • 10
    • 0026064347 scopus 로고
    • Repair of uracil residues closely spaced on the opposite strand of plasmid DNA results in double-strand break and deletion formation
    • Dianov,G.L., Timchenko,T.V., Sinitsina,O.I., Kuzminov,A.V., Medvedev,O.A. and Salganik,R.I. (1991) Repair of uracil residues closely spaced on the opposite strand of plasmid DNA results in double-strand break and deletion formation. Mol. Gen. Genet., 225, 448-452.
    • (1991) Mol. Gen. Genet. , vol.225 , pp. 448-452
    • Dianov, G.L.1    Timchenko, T.V.2    Sinitsina, O.I.3    Kuzminov, A.V.4    Medvedev, O.A.5    Salganik, R.I.6
  • 11
    • 0028342951 scopus 로고
    • Repair of oxidative damage to DNA: Enzymology and biology
    • Demple,B. and Harrison,L. (1994) Repair of oxidative damage to DNA: enzymology and biology. Annu. Rev. Biochem., 63, 915-948.
    • (1994) Annu. Rev. Biochem. , vol.63 , pp. 915-948
    • Demple, B.1    Harrison, L.2
  • 12
    • 0017239995 scopus 로고
    • DNA strand breaks, repair and survival in X-irradiated mammalian cells
    • Dugle,D.L., Gillespie,C.J. and Chapman,J.D. (1976) DNA strand breaks, repair and survival in X-irradiated mammalian cells. Proc. Natl Acad. Sci. USA, 73, 809-812.
    • (1976) Proc. Natl. Acad. Sci. USA , vol.73 , pp. 809-812
    • Dugle, D.L.1    Gillespie, C.J.2    Chapman, J.D.3
  • 13
    • 0019963235 scopus 로고
    • DNA double-strand breaks generated by the repair of X-ray damage in Chinese hamster cells
    • Ahnstrom,G. and Bryant,P.E. (1982) DNA double-strand breaks generated by the repair of X-ray damage in Chinese hamster cells. Int. J. Radiat. Biol., 41, 671-676.
    • (1982) Int. J. Radiat. Biol. , vol.41 , pp. 671-676
    • Ahnstrom, G.1    Bryant, P.E.2
  • 14
    • 0016774358 scopus 로고
    • Enzymatic induction of DNA double-strand breaks in gamma-irradiated E.coli K-12
    • Bonura,T., Smith,K.C. and Kaplan,H.S. (1975) Enzymatic induction of DNA double-strand breaks in gamma-irradiated E.coli K-12. Proc. Natl Acad. Sci. USA, 72, 4265-4269.
    • (1975) Proc. Natl. Acad. Sci. USA , vol.72 , pp. 4265-4269
    • Bonura, T.1    Smith, K.C.2    Kaplan, H.S.3
  • 15
    • 0035912756 scopus 로고    scopus 로고
    • Abortive base-excision repair of radiation-induced clustered DNA lesions in Escherichia coli
    • Blaisdell,J.O. and Wallace,S.S. (2001) Abortive base-excision repair of radiation-induced clustered DNA lesions in Escherichia coli. Proc. Natl Acad. Sci. USA, 98, 7426-7430.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 7426-7430
    • Blaisdell, J.O.1    Wallace, S.S.2
  • 16
    • 0035178567 scopus 로고    scopus 로고
    • Base excision repair processing of radiation-induced clustered DNA lesions
    • Blaisdell,J.O., Harrison,L. and Wallace,S.S. (2001) Base excision repair processing of radiation-induced clustered DNA lesions. Radiat. Protect. Dosimetry, 97, 25-31.
    • (2001) Radiat. Protect. Dosimetry , vol.97 , pp. 25-31
    • Blaisdell, J.O.1    Harrison, L.2    Wallace, S.S.3
  • 17
    • 0034763551 scopus 로고    scopus 로고
    • Response of base excision repair enzymes to complex DNA lesions
    • Weinfeld,M., Rasouli-Nia,A., Chaudhry,M.A. and Britten,R.A. (2001) Response of base excision repair enzymes to complex DNA lesions. Radiat. Res., 156, 584-589.
    • (2001) Radiat. Res. , vol.156 , pp. 584-589
    • Weinfeld, M.1    Rasouli-Nia, A.2    Chaudhry, M.A.3    Britten, R.A.4
  • 18
    • 0036275669 scopus 로고    scopus 로고
    • Can DNA repair cause enhanced cell killing following treatment with ionizing radiation?
    • Harrison,L. and Malyarchuk,S. (2002) Can DNA repair cause enhanced cell killing following treatment with ionizing radiation? Pathophysiology, 8, 149-159.
    • (2002) Pathophysiology , vol.8 , pp. 149-159
    • Harrison, L.1    Malyarchuk, S.2
  • 19
    • 0032788298 scopus 로고    scopus 로고
    • In vitro repair of synthetic ionizing radiation-induced multiply damaged DNA sites
    • Harrison,L., Hatahet,Z. and Wallace,S.S. (1999) In vitro repair of synthetic ionizing radiation-induced multiply damaged DNA sites. J. Mol. Biol., 290, 667-684.
    • (1999) J. Mol. Biol. , vol.290 , pp. 667-684
    • Harrison, L.1    Hatahet, Z.2    Wallace, S.S.3
  • 20
    • 0029079249 scopus 로고
    • Processivity of Escherichia coli and rat liver mitochondrial uracil-DNA glycosylase is affected by NaCl concentration
    • Bennett,S.E., Sanderson,R.J. and Mosbaugh,D.W. (1995) Processivity of Escherichia coli and rat liver mitochondrial uracil-DNA glycosylase is affected by NaCl concentration. Biochemistry, 34, 6109-6119.
    • (1995) Biochemistry , vol.34 , pp. 6109-6119
    • Bennett, S.E.1    Sanderson, R.J.2    Mosbaugh, D.W.3
  • 21
    • 0034702867 scopus 로고    scopus 로고
    • Escherichia coli double-strand uracil-DNA glycosylase: Involvement in uracil-mediated DNA base excision repair and stimulation of activity by endonuclease IV
    • Sung,J.S. and Mosbaugh,D.W. (2000) Escherichia coli double-strand uracil-DNA glycosylase: involvement in uracil-mediated DNA base excision repair and stimulation of activity by endonuclease IV. Biochemistry, 39, 10224-10235.
    • (2000) Biochemistry , vol.39 , pp. 10224-10235
    • Sung, J.S.1    Mosbaugh, D.W.2
  • 22
    • 0032555065 scopus 로고    scopus 로고
    • 4-ethenocytosine, a highly mutagenic adduct, is a primary substrate for Escherichia coli double-stranded uracil-DNA glycosylase and human mismatch-specific thymine-DNA glycosylase
    • 4-ethenocytosine, a highly mutagenic adduct, is a primary substrate for Escherichia coli double-stranded uracil-DNA glycosylase and human mismatch-specific thymine-DNA glycosylase. Proc. Natl Acad. Sci. USA, 95, 8508-8513.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 8508-8513
    • Saparbaev, M.1    Laval, J.2
  • 24
    • 0023318603 scopus 로고
    • Radiation-induced DNA damage and its repair
    • Téoule,R. (1987) Radiation-induced DNA damage and its repair. Int. J. Radiat. Biol., 51, 573-589.
    • (1987) Int. J. Radiat. Biol. , vol.51 , pp. 573-589
    • Téoule, R.1
  • 25
    • 0022358535 scopus 로고
    • Isolation of insertion, deletion and nonsense mutations of the uracil-DNA glycosylase (ung) gene of Escherichia coli K-12
    • Duncan,B.K. (1985) Isolation of insertion, deletion and nonsense mutations of the uracil-DNA glycosylase (ung) gene of Escherichia coli K-12. J. Bacteriol., 164, 689-695.
    • (1985) J. Bacteriol. , vol.164 , pp. 689-695
    • Duncan, B.K.1
  • 26
    • 39749146396 scopus 로고    scopus 로고
    • Introduction of plasmid DNA into cells
    • John Wiley and Sons, Inc., New York, NY
    • Seidman,C.E., Struhl,K., Sheen,J. and Jessen,T. (1997) Introduction of plasmid DNA into cells. In Current Protocols in Molecular Biology, Vol. 1, (Suppl. 37), John Wiley and Sons, Inc., New York, NY, 1.8.4-1.8.5.
    • (1997) Current Protocols in Molecular Biology , vol.1 , Issue.SUPPL. 37
    • Seidman, C.E.1    Struhl, K.2    Sheen, J.3    Jessen, T.4
  • 27
    • 0037726496 scopus 로고    scopus 로고
    • The mutation frequency of 8-oxo-7,8 dihydroguanine (8-oxodG) situated in a multiply damaged site: Comparison of a single and two closely opposed 8-oxodG in Escherichia coli
    • Malyarchuk,S., Youngblood,R., Landry,A.M., Quillin,E. and Harrison,L. (2003) The mutation frequency of 8-oxo-7,8 dihydroguanine (8-oxodG) situated in a multiply damaged site: comparison of a single and two closely opposed 8-oxodG in Escherichia coli. DNA Rep., 2, 695-705.
    • (2003) DNA Rep. , vol.2 , pp. 695-705
    • Malyarchuk, S.1    Youngblood, R.2    Landry, A.M.3    Quillin, E.4    Harrison, L.5
  • 28
    • 0017043747 scopus 로고
    • Novobiocin and coumermycin inhibit DNA supercoiling catalyzed by DNA gyrase
    • Gellert,M., O'Dea,M.H., Itoh,T. and Tomizawa,J. (1976) Novobiocin and coumermycin inhibit DNA supercoiling catalyzed by DNA gyrase. Proc. Natl Acad. Sci. USA, 73, 4474-4478.
    • (1976) Proc. Natl. Acad. Sci. USA , vol.73 , pp. 4474-4478
    • Gellert, M.1    O'Dea, M.H.2    Itoh, T.3    Tomizawa, J.4
  • 29
    • 0026529564 scopus 로고
    • Prophage induction by DNA topoisomerase II poisons and reactive-oxygen species: Role of DNA breaks
    • DeMarini,D.M. and Lawrence,B.K. (1992) Prophage induction by DNA topoisomerase II poisons and reactive-oxygen species: role of DNA breaks. Mutat. Res., 267, 1-17.
    • (1992) Mutat. Res. , vol.267 , pp. 1-17
    • DeMarini, D.M.1    Lawrence, B.K.2
  • 30
    • 0345379628 scopus 로고    scopus 로고
    • Phenotypic change caused by transcriptional by-pass of uracil in non-dividing cells
    • Viswanathan,A., You,H.J. and Doetsch,P.W. (1999) Phenotypic change caused by transcriptional by-pass of uracil in non-dividing cells. Science, 284, 159-162.
    • (1999) Science , vol.284 , pp. 159-162
    • Viswanathan, A.1    You, H.J.2    Doetsch, P.W.3
  • 31
    • 0030478013 scopus 로고    scopus 로고
    • Template strand gap bypass is a general property of prokaryotic RNA polymerases: Implications for elongation mechanisms
    • Liu,J. and Doetsch,P.W. (1996) Template strand gap bypass is a general property of prokaryotic RNA polymerases: Implications for elongation mechanisms. Biochemistry, 35, 14999-15008.
    • (1996) Biochemistry , vol.35 , pp. 14999-15008
    • Liu, J.1    Doetsch, P.W.2
  • 32
    • 0027165306 scopus 로고
    • Effects of abasic sites and DNA single strand breaks on prokaryotic RNA polymerases
    • Zhou,W. and Doetsch,P.W. (1993) Effects of abasic sites and DNA single strand breaks on prokaryotic RNA polymerases. Proc. Natl Acad. Sci. USA, 90, 6601-6605.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 6601-6605
    • Zhou, W.1    Doetsch, P.W.2
  • 33
    • 0032516880 scopus 로고    scopus 로고
    • Effects of non-bulky DNA base damages on Escherichia coli RNA polymerase-mediated elongation and promoter clearance
    • Viswanathan,A. and Doetsch,P.W. (1998) Effects of non-bulky DNA base damages on Escherichia coli RNA polymerase-mediated elongation and promoter clearance. J. Biol. Chem., 273, 21276-21281.
    • (1998) J. Biol. Chem. , vol.273 , pp. 21276-21281
    • Viswanathan, A.1    Doetsch, P.W.2
  • 34
    • 0035873875 scopus 로고    scopus 로고
    • Recognition and kinetics for excision of a base lesion within clustered DNA damage by the Escherichia coli proteins Fpg and Nth
    • David-Cordonnier,M.-H., Laval,J. and O'Neill,P. (2001) Recognition and kinetics for excision of a base lesion within clustered DNA damage by the Escherichia coli proteins Fpg and Nth. Biochemistry, 40, 5738-5746.
    • (2001) Biochemistry , vol.40 , pp. 5738-5746
    • David-Cordonnier, M.-H.1    Laval, J.2    O'Neill, P.3
  • 35
    • 0030917436 scopus 로고    scopus 로고
    • Reactivity of human apurinic/aprymidinic endonuclease and Escherichia coli exonuclease III with bistranded abasic sites in DNA
    • Chaudhry,M.A. and Weinfeld,M. (1997) Reactivity of human apurinic/aprymidinic endonuclease and Escherichia coli exonuclease III with bistranded abasic sites in DNA. J. Biol. Chem., 272, 15650-15655.
    • (1997) J. Biol. Chem. , vol.272 , pp. 15650-15655
    • Chaudhry, M.A.1    Weinfeld, M.2
  • 36
    • 0024468299 scopus 로고
    • A new mechanism for repairing oxidative DNA damage to DNA: (A)BC exonuclease removes AP sites and thymine glycols from DNA
    • Lin,J.-J. and Sancar,A. (1989) A new mechanism for repairing oxidative DNA damage to DNA: (A)BC exonuclease removes AP sites and thymine glycols from DNA. Biochemistry, 28, 7979-7984.
    • (1989) Biochemistry , vol.28 , pp. 7979-7984
    • Lin, J.-J.1    Sancar, A.2
  • 37
    • 0025337198 scopus 로고
    • Damage repertoire of the Escherichia coli UvrABC nuclease complex includes abasic sites, base-damage analogues and lesions containing adjacent 5′ or 3′ nicks
    • Snowden,A., Kow,Y.W. and Van Houten,B. (1990) Damage repertoire of the Escherichia coli UvrABC nuclease complex includes abasic sites, base-damage analogues and lesions containing adjacent 5′ or 3′ nicks. Biochemistry, 29, 7251-7259.
    • (1990) Biochemistry , vol.29 , pp. 7251-7259
    • Snowden, A.1    Kow, Y.W.2    Van Houten, B.3
  • 38
    • 0242418186 scopus 로고    scopus 로고
    • Endonuclease IV enhances base excision repair of endonuclease III from Methanobacterium thermoautotrophicum
    • Back,J.H., Chung,J.H., Park,Y.I., Kim,K.-S. and Han,Y.S. (2003) Endonuclease IV enhances base excision repair of endonuclease III from Methanobacterium thermoautotrophicum. DNA Rep., 2, 455-470.
    • (2003) DNA Rep. , vol.2 , pp. 455-470
    • Back, J.H.1    Chung, J.H.2    Park, Y.I.3    Kim, K.-S.4    Han, Y.S.5
  • 39
    • 0034697371 scopus 로고    scopus 로고
    • Clustered DNA damage, influence on damage excision by XRS 5 nuclear extracts and Escherichia coli Nth and Fpg proteins
    • David-Cordonnier,M.-H., Laval,J. and O'Neill,P. (2000) Clustered DNA damage, influence on damage excision by XRS 5 nuclear extracts and Escherichia coli Nth and Fpg proteins. J. Biol. Chem., 275, 11865-11873.
    • (2000) J. Biol. Chem. , vol.275 , pp. 11865-11873
    • David-Cordonnier, M.-H.1    Laval, J.2    O'Neill, P.3
  • 40
    • 0037243599 scopus 로고    scopus 로고
    • DNA gyrase requirements distinguish the alternate pathways of Mu transposition
    • Sokolsky,T.D. and Baker,T.A. (2003) DNA gyrase requirements distinguish the alternate pathways of Mu transposition. Mol. Microbiol., 47, 397-409.
    • (2003) Mol. Microbiol. , vol.47 , pp. 397-409
    • Sokolsky, T.D.1    Baker, T.A.2
  • 41
    • 0025826549 scopus 로고
    • Mechanism of Tn3 resolvase recombination in vivo
    • Bliska,J.B., Benjamin,H.W. and Cozzarelli,N.R. (1991) Mechanism of Tn3 resolvase recombination in vivo. J. Biol. Chem., 266, 2041-2047.
    • (1991) J. Biol. Chem. , vol.266 , pp. 2041-2047
    • Bliska, J.B.1    Benjamin, H.W.2    Cozzarelli, N.R.3
  • 42
    • 0023117639 scopus 로고
    • Use of site-specific recombination as a probe of DNA structure and metabolism in vivo
    • Bliska,J.B. and Cozzarelli,N.R. (1987) Use of site-specific recombination as a probe of DNA structure and metabolism in vivo. J. Mol. Biol., 194, 205-218.
    • (1987) J. Mol. Biol. , vol.194 , pp. 205-218
    • Bliska, J.B.1    Cozzarelli, N.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.