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Volumn 5, Issue 3, 2014, Pages 778-787

TestSTORM: Simulator for optimizing sample labeling and image acquisition in localization based super-resolution microscopy

Author keywords

[No Author keywords available]

Indexed keywords

IMAGE PROCESSING; OPTICAL RESOLVING POWER;

EID: 84895753714     PISSN: None     EISSN: 21567085     Source Type: Journal    
DOI: 10.1364/BOE.5.000778     Document Type: Article
Times cited : (28)

References (39)
  • 4
    • 34249945258 scopus 로고    scopus 로고
    • Far-field optical nanoscopy
    • S. W. Hell, "Far-field optical nanoscopy, " Science 316(5828), 1153-1158 (2007).
    • (2007) Science , vol.316 , Issue.5828 , pp. 1153-1158
    • Hell, S.W.1
  • 5
    • 60049098657 scopus 로고
    • Beiträge zur theorie des Mikroskops und der mikro-skopischer Wahrnehmung
    • E. Abbe, "Beiträge zur theorie des Mikroskops und der mikro-skopischer Wahrnehmung, " Arch. Mikrosk. Anat. 9(1), 413-418 (1873).
    • (1873) Arch. Mikrosk. Anat. , vol.9 , Issue.1 , pp. 413-418
    • Abbe, E.1
  • 6
    • 0028460042 scopus 로고
    • Breaking the diffraction resolution limit by stimulated emission: Stimulatedemission-depletion fluorescence microscopy
    • S. W. Hell and J. Wichmann, "Breaking the diffraction resolution limit by stimulated emission: stimulatedemission-depletion fluorescence microscopy, " Opt. Lett. 19(11), 780-782 (1994).
    • (1994) Opt. Lett. , vol.19 , Issue.11 , pp. 780-782
    • Hell, S.W.1    Wichmann, J.2
  • 7
    • 35748933204 scopus 로고    scopus 로고
    • STED microscopy with continuous wave beams
    • K. I. Willig, B. Harke, R. Medda, and S. W. Hell, "STED microscopy with continuous wave beams, " Nat. Methods 4(11), 915-918 (2007).
    • (2007) Nat. Methods , vol.4 , Issue.11 , pp. 915-918
    • Willig, K.I.1    Harke, B.2    Medda, R.3    Hell, S.W.4
  • 8
    • 0034028826 scopus 로고    scopus 로고
    • Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy
    • M. G. L. Gustafsson, "Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy, " J. Microsc. 198(2), 82-87 (2000).
    • (2000) J. Microsc. , vol.198 , Issue.2 , pp. 82-87
    • Gustafsson, M.G.L.1
  • 9
    • 33749026335 scopus 로고    scopus 로고
    • Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
    • M. J. Rust, M. Bates, and X. Zhuang, "Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM), " Nat. Methods 3(10), 793-796 (2006).
    • (2006) Nat. Methods , vol.3 , Issue.10 , pp. 793-796
    • Rust, M.J.1    Bates, M.2    Zhuang, X.3
  • 10
    • 82355191588 scopus 로고    scopus 로고
    • Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging
    • G. T. Dempsey, J. C. Vaughan, K. H. Chen, M. Bates, and X. Zhuang, "Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging, " Nat. Methods 8(12), 1027-1036 (2011).
    • (2011) Nat. Methods , vol.8 , Issue.12 , pp. 1027-1036
    • Dempsey, G.T.1    Vaughan, J.C.2    Chen, K.H.3    Bates, M.4    Zhuang, X.5
  • 11
    • 33845360042 scopus 로고    scopus 로고
    • Ultra-high resolution imaging by fluorescence photoactivation localization microscopy
    • S. T. Hess, T. P. K. Girirajan, and M. D. Mason, "Ultra-high resolution imaging by fluorescence photoactivation localization microscopy, " Biophys. J. 91(11), 4258-4272 (2006).
    • (2006) Biophys. J. , vol.91 , Issue.11 , pp. 4258-4272
    • Hess, S.T.1    Girirajan, T.P.K.2    Mason, M.D.3
  • 12
    • 60549086255 scopus 로고    scopus 로고
    • Imaging biological structures with fluorescence photoactivation localization microscopy
    • T. J. Gould, V. V. Verkhusha, and S. T. Hess, "Imaging biological structures with fluorescence photoactivation localization microscopy, " Nat. Protoc. 4(3), 291-308 (2009).
    • (2009) Nat. Protoc. , vol.4 , Issue.3 , pp. 291-308
    • Gould, T.J.1    Verkhusha, V.V.2    Hess, S.T.3
  • 15
    • 77956905332 scopus 로고    scopus 로고
    • The effect of photoswitching kinetics and labeling densities on super-resolution fluorescence imaging
    • S. van de Linde, S. Wolter, M. Heilemann, and M. Sauer, "The effect of photoswitching kinetics and labeling densities on super-resolution fluorescence imaging, " J. Biotechnol. 149(4), 260-266 (2010).
    • (2010) J. Biotechnol. , vol.149 , Issue.4 , pp. 260-266
    • van de Linde, S.1    Wolter, S.2    Heilemann, M.3    Sauer, M.4
  • 16
    • 42949083695 scopus 로고    scopus 로고
    • Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics
    • H. Shroff, C. G. Galbraith, J. A. Galbraith, and E. Betzig, "Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics, " Nat. Methods 5(5), 417-423 (2008).
    • (2008) Nat. Methods , vol.5 , Issue.5 , pp. 417-423
    • Shroff, H.1    Galbraith, C.G.2    Galbraith, J.A.3    Betzig, E.4
  • 19
    • 0038512550 scopus 로고    scopus 로고
    • Orientation imaging of single molecules by wide-field epifluorescence microscopy
    • M. Böhmer and J. Enderlein, "Orientation imaging of single molecules by wide-field epifluorescence microscopy, " J. Opt. Soc. Am. B 20(3), 554-559 (2003).
    • (2003) J. Opt. Soc. Am. B , vol.20 , Issue.3 , pp. 554-559
    • Böhmer, M.1    Enderlein, J.2
  • 20
    • 84858957276 scopus 로고    scopus 로고
    • Position and orientation estimation of fixed dipole emitters using an effective Hermite point spread function model
    • S. Stallinga and B. Rieger, "Position and orientation estimation of fixed dipole emitters using an effective Hermite point spread function model, " Opt. Express 20(6), 5896-5921 (2012).
    • (2012) Opt. Express , vol.20 , Issue.6 , pp. 5896-5921
    • Stallinga, S.1    Rieger, B.2
  • 21
    • 84867520691 scopus 로고    scopus 로고
    • Unified resolution bounds for conventional and stochastic localization fluorescence microscopy
    • E. A. Mukamel and M. J. Schnitzer, "Unified resolution bounds for conventional and stochastic localization fluorescence microscopy, " Phys. Rev. Lett. 109(16), 168102 (2012).
    • (2012) Phys. Rev. Lett. , vol.109 , Issue.16 , pp. 168102
    • Mukamel, E.A.1    Schnitzer, M.J.2
  • 22
    • 84884212024 scopus 로고    scopus 로고
    • Blind assessment of localization microscopy image resolution
    • doi:10.1186/2192-2853-1-12
    • E. J. Rees, M. Erdelyi, D. Pinotsi, A. Knight, D. Metcalf, and C. F. Kaminski, "Blind assessment of localization microscopy image resolution, " Opt. Nanoscopy 1(1), 12 (2012), doi:10.1186/2192-2853-1-12.
    • (2012) Opt. Nanoscopy , vol.1 , Issue.1 , pp. 12
    • Rees, E.J.1    Erdelyi, M.2    Pinotsi, D.3    Knight, A.4    Metcalf, D.5    Kaminski, C.F.6
  • 23
    • 84895753032 scopus 로고    scopus 로고
    • http://laser.cheng.cam.ac.uk/wiki/index.php/Resources
  • 27
    • 84869224993 scopus 로고    scopus 로고
    • Secretory vesicles are preferentially targeted to areas of low molecular SNARE density
    • doi:10.1371/journal.pone.0049514
    • L. Yang, A. R. Dun, K. J. Martin, Z. Qiu, A. Dunn, G. J. Lord, W. Lu, R. R. Duncan, and C. Rickman, "Secretory vesicles are preferentially targeted to areas of low molecular SNARE density, " PLoS ONE 7(11), e49514 (2012), doi:10.1371/journal.pone.0049514.
    • (2012) PLoS ONE , vol.7 , Issue.11
    • Yang, L.1    Dun, A.R.2    Martin, K.J.3    Qiu, Z.4    Dunn, A.5    Lord, G.J.6    Lu, W.7    Duncan, R.R.8    Rickman, C.9
  • 28
    • 84884842979 scopus 로고    scopus 로고
    • Elements of image processing in localization microscopy
    • E. J. Rees, M. Erdelyi, G. S. K. Schierle, A. Knight, and C. F. Kaminski, "Elements of image processing in localization microscopy, " J. Opt. 15(9), 094012 (2013).
    • (2013) J. Opt. , vol.15 , Issue.9 , pp. 094012
    • Rees, E.J.1    Erdelyi, M.2    Schierle, G.S.K.3    Knight, A.4    Kaminski, C.F.5
  • 30
    • 79953322253 scopus 로고    scopus 로고
    • Photoinduced formation of reversible dye radicals and their impact on super-resolution imaging
    • S. van de Linde, I. Krstić, T. Prisner, S. Doose, M. Heilemann, and M. Sauer, "Photoinduced formation of reversible dye radicals and their impact on super-resolution imaging, " Photochem. Photobiol. Sci. 10(4), 499-506 (2011).
    • (2011) Photochem. Photobiol. Sci. , vol.10 , Issue.4 , pp. 499-506
    • van de Linde, S.1    Krstić, I.2    Prisner, T.3    Doose, S.4    Heilemann, M.5    Sauer, M.6
  • 32
    • 78649686697 scopus 로고    scopus 로고
    • Accuracy of the Gaussian point spread function model in 2D localization microscopy
    • S. Stallinga and B. Rieger, "Accuracy of the Gaussian point spread function model in 2D localization microscopy, " Opt. Express 18(24), 24461-24476 (2010).
    • (2010) Opt. Express , vol.18 , Issue.24 , pp. 24461-24476
    • Stallinga, S.1    Rieger, B.2
  • 33
    • 84895746636 scopus 로고    scopus 로고
    • http://www.andor.com/scientific-cameras/ixon-emccd-camera-series
  • 34
    • 84895755262 scopus 로고    scopus 로고
    • http://www.microscopyu.com/articles/fluorescence/fluorescenceintro.html
  • 35
    • 84895736573 scopus 로고    scopus 로고
    • http://titan.physx.u-szeged.hu/~adoptim/
  • 37
    • 80052253107 scopus 로고    scopus 로고
    • Simultaneous multiple-emitter fitting for single molecule super-resolution imaging
    • F. Huang, S. L. Schwartz, J. M. Byars, and K. A. Lidke, "Simultaneous multiple-emitter fitting for single molecule super-resolution imaging, " Biomed. Opt. Express 2(5), 1377-1393 (2011).
    • (2011) Biomed. Opt. Express , vol.2 , Issue.5 , pp. 1377-1393
    • Huang, F.1    Schwartz, S.L.2    Byars, J.M.3    Lidke, K.A.4
  • 38
    • 84884192967 scopus 로고    scopus 로고
    • Test samples for optimizing STORM superresolution microscopy
    • doi:10.3791/50579
    • D. J. Metcalf, R. Edwards, N. Kumarswami, and A. E. Knight, "Test samples for optimizing STORM superresolution microscopy, " J. Vis. Exp. 79, 50579 (2013), doi:10.3791/50579.
    • (2013) J. Vis. Exp. , vol.79 , pp. 50579
    • Metcalf, D.J.1    Edwards, R.2    Kumarswami, N.3    Knight, A.E.4
  • 39
    • 79959854835 scopus 로고    scopus 로고
    • Identification of clustering artifacts in photoactivated localization microscopy
    • P. Annibale, S. Vanni, M. Scarselli, U. Rothlisberger, and A. Radenovic, "Identification of clustering artifacts in photoactivated localization microscopy, " Nat. Methods 8(7), 527-528 (2011).
    • (2011) Nat. Methods , vol.8 , Issue.7 , pp. 527-528
    • Annibale, P.1    Vanni, S.2    Scarselli, M.3    Rothlisberger, U.4    Radenovic, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.