Position and orientation estimation of fixed dipole emitters using an effective Hermite point spread function model

Optics Express

Volumn 20, Issue 6, 2012, Pages 5896-5898

  Stallinga, Sjoerd ^a   Rieger, Bernd ^a  

^a DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

OPTICAL CONSTANTS; OPTICS;

COMPUTATIONAL ADVANTAGES; DEFOCUS; DEPTH OF FOCUS; DIPOLE ORIENTATION; EFFECTIVE POINT SPREAD FUNCTIONS; GAUSSIAN SPOT; GAUSSIANS; HERMITE; HERMITE FUNCTIONS; KEY ELEMENTS; ORIENTATION ESTIMATION; POINT SPREAD FUNCTION MODEL; POLARIZATION DETECTION; SHAPE DETECTION; SHAPE VARIATIONS; SIGNAL LEVEL;

OPTICAL TRANSFER FUNCTION;

ALGORITHM; ARTICLE; COMPUTER SIMULATION; LIGHT; METHODOLOGY; PHOTOMETRY; RADIATION SCATTERING; THEORETICAL MODEL;

ALGORITHMS; COMPUTER SIMULATION; LIGHT; MODELS, THEORETICAL; PHOTOMETRY; SCATTERING, RADIATION;

EID: 84858957276     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.20.005896     Document Type: Article

References (27)

1. E. Betzig, G. H. Patterson, R. Sougrat, O. W. Lindwasser, S. Olenych, J. S. Bonifacino, M. W. Davidson, J. Lippincott-Schwartz, and H. F. Hess, "Imaging Intracellular Fluorescent Proteins at Nanometer Resolution," Science 313, 1643-1645 (2006).
2. K. A. Lidke, B. Rieger, T. M. Jovin, and R. Heintzmann, "Superresolution by localization ofquantum dots using blinking statistics," Opt. Express 13, 7052-7062 (2005). (Pubitemid 41305581)
3. M. J. Rust, M. Bates, and X. Zhuang, "Sub-diffraction-limit imaging by stochastic optical reconstruction mi-croscopy (STORM)," Nat. Methods 3, 793-795 (2006). (Pubitemid 44445825)
4. J. Fölling, M. Bossi, H. Bock, R. Medda, C. A. Wurm, B. Hein, S. Jakobs, C. Eggeling, and S. W Hell, "Fluores-cence nanoscopy by ground-state depletion and single-molecule return," Nat. Methods 5, 943-945 (2008).
5. M. Heilemann, S. van de Linde, M. Schüttpelz, R. Kasper, B. Seefeldt, A. Mukherjee, P. Tinnefeld, and M. Sauer, "Subdiffraction- resolution fluorescence imaging with conventional fluorescent probes," Angew. Chem., Int. Ed. Engl. 47 6172-6176 (2008).
6. S. Stallinga and B. Rieger, "Accuracy of the Gaussian Point Spread Function model in 2D localization mi-croscopy," Opt. Express 18, 24461-24476 (2010).
7. J. Engelhardt, J. Keller, P. Hoyer, M. Reuss, T. Staudt, and S. W. Hell, "Molecular orientation affects localization accuracy in superresolution far-field fluorescence microscopy," Nano Lett. 11, 209-213 (2010).
8. J. Enderlein, E. Toprak, and P. R. Selvin, "Polarization effect on position accuracy of fluorophore localization," Opt. Express 14, 8111 (2006).
9. T. J. Gould, M. S. Gunewardene, M. V. Gudheti, V. V. Verkhusha, S.-R. Yin, J. A. Gosse, and S. T. Hess, "Nanoscale imaging ofpositions and anisotropies," Nat Methods 5, 1027-1031, 2008.
10. S. R. P. Pavani, J. G. De Luca, and R. Piestun, "Polarization sensitive, three-dimensional, single-molecule imaging of cells with a double-helix system," Opt. Express 17, 19644-19655 (2009).
11. M. R. Foreman, C. M. Romero, and P. Török, "Determination of the three-dimensional orientation of single molecules," Opt. Lett. 33, 1020-1022 (2008).
12. M. R. Foreman and P. Török, "Fundamental limits in single-molecule orientation measurements," New J. Phys. 13, 093013 (2011).
13. R. M. A. Azzam, "Division-of-amplitude Photopolarimeter (DOAP) for the Simultaneous Measurement of All Four Stokes Parameters of Light," Opt. Acta29, 685-689 (1982).
14. A. P. Bartko and R. M. Dickson, "Imaging three-dimensional single molecule orientations," J. Phys. Chem. B 103, 11237-11241 (1999). (Pubitemid 129614188)
15. P. Dedecker, B. Muls, J. Hofkens, J. Enderlein, and J. Hotta, "Orientational effects in the excitation and de-excitation ofsingle molecules interacting with donut-mode laser beams," Opt. Express 15, 3372-3383 (2007). (Pubitemid 46457199)
16. F. Aguet, A. Geissbühler, I. Märki, T. Lasser, and M. Unser, "Super-resolution orientation estimation and local-ization offluorescent dipoles using 3-D steerable filters," Opt. Express 17, 6829-6848 (2009).
17. K. I. Mortensen, L. S. Churchman, J. A. Spudich, and H. Flyvbjerg, "Optimized localization analysis for single-molecule tracking and super-resolution microscopy," Nat Methods 7, 377-381 (2010).
18. T. Wilson, R. Juskaitis, and P. D. Higdon, "The imaging ofdielectric point scatterers in conventional and confocal polarisation microscopes," Opt. Commun. 141, 298-313 (1997). (Pubitemid 127399309)
19. P. Török, P. D. Higdon, and T. Wilson, "Theory for confocal and conventional microscopes imaging small di-electric scatterers," J. Mod. Opt. 45, 1681-1698 (1998). (Pubitemid 128603665)
20. C. S. Smith, N. Joseph, B. Rieger, and K. A. Lidke, "Fast, single-molecule localization that achieves theoretically minimum uncertainty," Nat Methods 7, 373-375 (2010).
21. E. Zauderer, "Complex argument Hermite-Gaussian and Laguerre-Gaussian beams," J. Opt. Soc. Am. A 3, 465-469 (1986).
22. W. H. Press, S. A. Teukolsky, W. T. Vetterling, and B. P. Flannery, "Numerical Recipes in Fortran 77," 2nd ed. (Cambridge Univeristy Press, 1992).
23. E. Toprak, H. Balci, B. H. Blehm, and P. R. Selvin, "Three- dimensional particle tracking via bifocal imaging," Nano Lett. 7, 2043-2045 (2007). (Pubitemid 47197589)
24. M. F. Juette, T. J. Gould, M. D. Lessard, M. J. Mlodzianoski, B. S. Nagpure, B. T. Bennett, S. T. Hess, and J. Bewersdorf, "Three-dimensional sub-100nm resolution fluorescence microscopy ofthick samples," Nat Methods 5, 527-530 (2008).
25. L. Holtzer, T. Meckel, and T. Schmidt, "Nanometric three-dimensional tracking ofindividual quantum dots in cells," Appl. Phys. Lett. 90, (053902), 1-3 (2007).
26. B. Huang, W. Wang, M. Bates, and X. Zhuang, "Three-dimensional super-resolution imaging by stochastic opti-cal reconstruction microscopy," Science 319, 810-813 (2008). (Pubitemid 351225870)
27. S. R. P. Pavani and R. Piestun, "Three dimensional tracking offluorescent microparticles using a photon-limited double-helix response system," Opt. Express 16, 22048-22057 (2008).