-
1
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
2
-
-
0038299558
-
Role of microRNAs in plant and animal development
-
DOI 10.1126/science.1085242
-
Carrington JC, Ambros V (2003) Role of microRNAs in plant and animal development. Science 301: 336-338. (Pubitemid 36877060)
-
(2003)
Science
, vol.301
, Issue.5631
, pp. 336-338
-
-
Carrington, J.C.1
Ambros, V.2
-
3
-
-
60149086351
-
Origin, Biogenesis, and Activity of Plant MicroRNAs
-
Voinnet O (2009) Origin, Biogenesis, and Activity of Plant MicroRNAs. Cell 136: 669-687.
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
4
-
-
34347355440
-
miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
-
DOI 10.1038/nature05903, PII NATURE05903
-
Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC (2007) miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature 447: 1126-1129. (Pubitemid 47014429)
-
(2007)
Nature
, vol.447
, Issue.7148
, pp. 1126-1129
-
-
Molnar, A.1
Schwach, F.2
Studholme, D.J.3
Thuenemann, E.C.4
Baulcombe, D.C.5
-
5
-
-
34249093687
-
A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
-
Zhao T, Li G, Mi S, Li S, Hannon GJ, et al. (2007) A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes Dev 21: 1190-1203.
-
(2007)
Genes Dev
, vol.21
, pp. 1190-1203
-
-
Zhao, T.1
Li, G.2
Mi, S.3
Li, S.4
Hannon, G.J.5
-
6
-
-
0242266620
-
Dicer is essential for mouse development
-
DOI 10.1038/ng1253
-
Bernstein E, Kim SY, Carmell MA, Murchison EP, Alcorn H, et al. (2003) Dicer is essential for mouse development. Nat Genet 35: 215-217. (Pubitemid 37363172)
-
(2003)
Nature Genetics
, vol.35
, Issue.3
, pp. 215-217
-
-
Bernstein, E.1
Kim, S.Y.2
Carmell, M.A.3
Murchison, E.P.4
Alcorn, H.5
Li, M.Z.6
Mills, A.A.7
Elledge, S.J.8
Anderson, K.V.9
Hannon, G.J.10
-
7
-
-
17644363376
-
A cellular microRNA mediates antiviral defense in human cells
-
DOI 10.1126/science.1108784
-
Lecellier CH, Dunoyer P, Arar K, Lehmann-Che J, Eyquem S, et al. (2005) A cellular microRNA mediates antiviral defense in human cells. Science 308: 557-560. (Pubitemid 40570587)
-
(2005)
Science
, vol.308
, Issue.5721
, pp. 557-560
-
-
Lecellier, C.-H.1
Dunoyer, P.2
Arar, K.3
Lehmann-Che, J.4
Eyquem, S.5
Himber, C.6
Saib, A.7
Voinnet, O.8
-
8
-
-
77953217767
-
Arabidopsis lyrata Small RNAs: Transient MIRNA and Small Interfering RNA Loci within the Arabidopsis Genus
-
Ma Z, Coruh C, Axtell MJ (2010) Arabidopsis lyrata Small RNAs: Transient MIRNA and Small Interfering RNA Loci within the Arabidopsis Genus. Plant Cell 22: 1090-1103.
-
(2010)
Plant Cell
, vol.22
, pp. 1090-1103
-
-
Ma, Z.1
Coruh, C.2
Axtell, M.J.3
-
9
-
-
33847311819
-
MicroRNAs and Immunity: Tiny Players in a Big Field
-
DOI 10.1016/j.immuni.2007.02.005, PII S1074761307001446
-
Taganov KD, Boldin MP, Baltimore D (2007) MicroRNAs and immunity: tiny players in a big field. Immunity 26: 133-137. (Pubitemid 46329443)
-
(2007)
Immunity
, vol.26
, Issue.2
, pp. 133-137
-
-
Taganov, K.D.1
Boldin, M.P.2
Baltimore, D.3
-
10
-
-
68749100821
-
The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis
-
Wu G, Park MY, Conway SR, Wang JW, Weigel D, et al. (2009) The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis. Cell 138: 750-759.
-
(2009)
Cell
, vol.138
, pp. 750-759
-
-
Wu, G.1
Park, M.Y.2
Conway, S.R.3
Wang, J.W.4
Weigel, D.5
-
11
-
-
33748769519
-
Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice
-
DOI 10.1104/pp.106.084475
-
Xie K, Wu C, Xiong L (2006) Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice. Plant Physiology 142: 280-293. (Pubitemid 44412247)
-
(2006)
Plant Physiology
, vol.142
, Issue.1
, pp. 280-293
-
-
Xie, K.1
Wu, C.2
Xiong, L.3
-
12
-
-
15744391012
-
Dicer is required for embryonic angiogenesis during mouse development
-
DOI 10.1074/jbc.M413394200
-
Yang WJ, Yang DD, Na S, Sandusky GE, Zhang Q, et al. (2005) Dicer is required for embryonic angiogenesis during mouse development. J Biol Chem 280: 9330-9335. (Pubitemid 40409626)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.10
, pp. 9330-9335
-
-
Yang, W.J.1
Yang, D.D.2
Na, S.3
Sandusky, G.E.4
Zhang, Q.5
Zhao, G.6
-
13
-
-
50649110065
-
A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
-
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, et al. (2008) A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains. Genome Research 18: 1456-1465.
-
(2008)
Genome Research
, vol.18
, pp. 1456-1465
-
-
Zhu, Q.H.1
Spriggs, A.2
Matthew, L.3
Fan, L.4
Kennedy, G.5
-
14
-
-
34848898946
-
Conservation and evolution of miRNA regulatory programs in plant development
-
DOI 10.1016/j.pbi.2007.07.004, PII S1369526607000866, Cell Signalling and Gene Regulation Edited by Jian-Kang Zhu and Ko Shimamoto
-
Willmann MR, Poethig RS (2007) Conservation and evolution of miRNA regulatory programs in plant development. Curr Opin Plant Biol 10: 503-511. (Pubitemid 47503879)
-
(2007)
Current Opinion in Plant Biology
, vol.10
, Issue.5
, pp. 503-511
-
-
Willmann, M.R.1
Poethig, R.S.2
-
16
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
DOI 10.1038/nbt1394, PII NBT1394
-
Friedländer MR, Chen W, Adamidi C, Maaskola J, Einspanier R, et al. (2008) Discovering microRNAs from deep sequencing data using miRDeep. Nature Biotechnology 26: 407-415. (Pubitemid 351501815)
-
(2008)
Nature Biotechnology
, vol.26
, Issue.4
, pp. 407-415
-
-
Friedlander, M.R.1
Chen, W.2
Adamidi, C.3
Maaskola, J.4
Einspanier, R.5
Knespel, S.6
Rajewsky, N.7
-
17
-
-
80052792180
-
mirExplorer: Detecting microRNAs from genome and next generation sequencing data using the AdaBoost method with transition probability matrix and combined features
-
Guan DG, Liao JY, Qu ZH, Zhang Y, Qu LH (2011) mirExplorer: detecting microRNAs from genome and next generation sequencing data using the AdaBoost method with transition probability matrix and combined features. RNA Biol 8: 922-934.
-
(2011)
RNA Biol
, vol.8
, pp. 922-934
-
-
Guan, D.G.1
Liao, J.Y.2
Qu, Z.H.3
Zhang, Y.4
Qu, L.H.5
-
18
-
-
33646830110
-
Conservation and divergence of plant microRNA genes
-
DOI 10.1111/j.1365-313X.2006.02697.x
-
Zhang B, Pan X, Cannon CH, Cobb GP, Anderson TA (2006) Conservation and divergence of plant microRNA genes. Plant J 46: 243-259. (Pubitemid 43773564)
-
(2006)
Plant Journal
, vol.46
, Issue.2
, pp. 243-259
-
-
Zhang, B.1
Pan, X.2
Cannon, C.H.3
Cobb, G.P.4
Anderson, T.A.5
-
19
-
-
39549115890
-
Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
-
Yao Y, Guo G, Ni Z, Sunkar R, Du J, et al. (2007) Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome Biol 8: R96.
-
(2007)
Genome Biol
, vol.8
-
-
Yao, Y.1
Guo, G.2
Ni, Z.3
Sunkar, R.4
Du, J.5
-
20
-
-
81155134417
-
Identification and characterization of microRNAs from peanut (Arachis hypogaea L.) by highthroughput sequencing
-
Chi X, Yang Q, Chen X, Wang J, Pan L, et al. (2011) Identification and characterization of microRNAs from peanut (Arachis hypogaea L.) by highthroughput sequencing. PloS One 6: e27530.
-
(2011)
PloS One
, vol.6
-
-
Chi, X.1
Yang, Q.2
Chen, X.3
Wang, J.4
Pan, L.5
-
21
-
-
84861338860
-
Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing
-
Pelaez P, Trejo MS, Iniguez LP, Estrada-Navarrete G, Covarrubias AA, et al. (2012) Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing. BMC Genomics 13: 83.
-
(2012)
BMC Genomics
, vol.13
, pp. 83
-
-
Pelaez, P.1
Trejo, M.S.2
Iniguez, L.P.3
Estrada-Navarrete, G.4
Covarrubias, A.A.5
-
22
-
-
84858980069
-
Identification of microRNAs from Amur grape (Vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics
-
Wang C, Han J, Liu C, Kibet KN, Kayesh E, et al. (2012) Identification of microRNAs from Amur grape (Vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics. BMC Genomics 13: 122.
-
(2012)
BMC Genomics
, vol.13
, pp. 122
-
-
Wang, C.1
Han, J.2
Liu, C.3
Kibet, K.N.4
Kayesh, E.5
-
23
-
-
84864828309
-
High-throughput sequencing discovery of conserved and novel microRNAs in Chinese cabbage (Brassica rapa L. ssp pekinensis)
-
Wang F, Li L, Liu L, Li H, Zhang Y, et al. (2012) High-throughput sequencing discovery of conserved and novel microRNAs in Chinese cabbage (Brassica rapa L. ssp pekinensis). Molecular Genetics and Genomics 287: 555-563.
-
(2012)
Molecular Genetics and Genomics
, vol.287
, pp. 555-563
-
-
Wang, F.1
Li, L.2
Liu, L.3
Li, H.4
Zhang, Y.5
-
24
-
-
84865131821
-
In-silico and invivo analyses of EST databases unveil conserved miRNAs from Carthamus tinctorius and Cynara cardunculus
-
Catalano D, Pignone D, Sonnante G, Finetti-Sialer MM (2012) In-silico and invivo analyses of EST databases unveil conserved miRNAs from Carthamus tinctorius and Cynara cardunculus. BMC Bioinformatics 13.
-
(2012)
BMC Bioinformatics
, vol.13
-
-
Catalano, D.1
Pignone, D.2
Sonnante, G.3
Finetti-Sialer, M.M.4
-
25
-
-
84861872022
-
Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets
-
Gebelin V, Argout X, Engchuan W, Pitollat B, Duan CF, et al. (2012) Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets. BMC Plant Biology 12.
-
(2012)
BMC Plant Biology
, vol.12
-
-
Gebelin, V.1
Argout, X.2
Engchuan, W.3
Pitollat, B.4
Duan, C.F.5
-
26
-
-
77955387859
-
Computational identification of citrus microRNAs and target analysis in citrus expressed sequence tags
-
Song C, Jia Q, Fang J, Li F, Wang C, et al. (2010) Computational identification of citrus microRNAs and target analysis in citrus expressed sequence tags. Plant Biology 12: 927-934.
-
(2010)
Plant Biology
, vol.12
, pp. 927-934
-
-
Song, C.1
Jia, Q.2
Fang, J.3
Li, F.4
Wang, C.5
-
27
-
-
0042232552
-
Expressed sequence tags: Alternative or complement to whole genome sequences?
-
Rudd S (2003) Expressed sequence tags: alternative or complement to whole genome sequences? Trends in Plant Science 8: 321-329.
-
(2003)
Trends in Plant Science
, vol.8
, pp. 321-329
-
-
Rudd, S.1
-
28
-
-
19944384237
-
Comparative EST analyses in plant systems
-
DOI 10.1016/S0076-6879(05)95022-2, PII S0076687905950222, Molecular Evolution: Producing the Biochemical Data
-
Dong Q, Kroiss L, Oakley FD, Wang BB, Brendel V (2005) Comparative EST analyses in plant systems. Methods in Enzymology 395: 400-418. (Pubitemid 40754379)
-
(2005)
Methods in Enzymology
, vol.395
, pp. 400-418
-
-
Dong, Q.1
Kroiss, L.2
Oakley, F.D.3
Wang, B.-B.4
Brendel, V.5
-
29
-
-
51849142774
-
The Silkworm (Bombyx mori) microRNAs and Their Expressions in Multiple Developmental Stages
-
Yu XM, Zhou Q, Li SC, Luo QB, Cai YM, et al. (2008) The Silkworm (Bombyx mori) microRNAs and Their Expressions in Multiple Developmental Stages. PloS One 3.
-
(2008)
PloS One
, vol.3
-
-
Yu, X.M.1
Zhou, Q.2
Li, S.C.3
Luo, Q.B.4
Cai, Y.M.5
-
30
-
-
84864696893
-
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants
-
D'Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, et al. (2012) The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature 488: 213-217.
-
(2012)
Nature
, vol.488
, pp. 213-217
-
-
D'Hont, A.1
Denoeud, F.2
Aury, J.M.3
Baurens, F.C.4
Carreel, F.5
-
31
-
-
22844440427
-
Identification of hundreds of conserved and nonconserved human microRNAs
-
DOI 10.1038/ng1590
-
Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, et al. (2005) Identification of hundreds of conserved and nonconserved human microRNAs. Nat Genet 37: 766-770. (Pubitemid 41754896)
-
(2005)
Nature Genetics
, vol.37
, Issue.7
, pp. 766-770
-
-
Bentwich, I.1
Avniel, A.2
Karov, Y.3
Aharonov, R.4
Gilad, S.5
Barad, O.6
Barzilai, A.7
Einat, P.8
Einav, U.9
Meiri, E.10
Sharon, E.11
Spector, Y.12
Bentwich, Z.13
-
32
-
-
84865304222
-
Identification of miRNAs and their targets from Brassica napus by high-throughput sequencing and degradome analysis
-
Xu MY, Dong Y, Zhang QX, Zhang L, Luo YZ, et al. (2012) Identification of miRNAs and their targets from Brassica napus by high-throughput sequencing and degradome analysis. BMC Genomics 13.
-
(2012)
BMC Genomics
, vol.13
-
-
Xu, M.Y.1
Dong, Y.2
Zhang, Q.X.3
Zhang, L.4
Luo, Y.Z.5
-
33
-
-
84859495972
-
Identification and Characterization of MicroRNAs in Asiatic Cotton (Gossypium arboreum L.)
-
Wang M, Wang Q, Wang B (2012) Identification and Characterization of MicroRNAs in Asiatic Cotton (Gossypium arboreum L.). PloS One 7.
-
(2012)
PloS One
, vol.7
-
-
Wang, M.1
Wang, Q.2
Wang, B.3
-
34
-
-
27844495281
-
Identification and characterization of new plant microRNAs using EST analysis
-
DOI 10.1038/sj.cr.7290302
-
Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA (2005) Identification and characterization of new plant microRNAs using EST analysis. Cell Research 15: 336-360. (Pubitemid 41653929)
-
(2005)
Cell Research
, vol.15
, Issue.5
, pp. 336-360
-
-
Zhang, B.H.1
Pan, X.P.2
Wang, Q.L.3
Cobb, G.P.4
Anderson, T.A.5
-
35
-
-
7644237777
-
Intron-derived microRNAs-fine tuning of gene functions
-
Ying SY, Lin SL (2004) Intron-derived microRNAs-fine tuning of gene functions. Gene 342: 25-28.
-
(2004)
Gene
, vol.342
, pp. 25-28
-
-
Ying, S.Y.1
Lin, S.L.2
-
37
-
-
0036021693
-
Mechanisms and rates of genome expansion and contraction in flowering plants
-
Bennetzen JL (2002) Mechanisms and rates of genome expansion and contraction in flowering plants. Genetica 115: 29-36.
-
(2002)
Genetica
, vol.115
, pp. 29-36
-
-
Bennetzen, J.L.1
-
38
-
-
33846474760
-
A hitchhiker's guide to expressed sequence tag (EST) analysis
-
DOI 10.1093/bib/bbl015
-
Nagaraj SH, Gasser RB, Ranganathan S (2007) A hitchhiker's guide to expressed sequence tag (EST) analysis. Briefings in Bioinformatics 8: 6-21. (Pubitemid 46157926)
-
(2007)
Briefings in Bioinformatics
, vol.8
, Issue.1
, pp. 6-21
-
-
Nagaraj, S.H.1
Gasser, R.B.2
Ranganathan, S.3
-
39
-
-
78651307694
-
starBase: A database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
-
Yang JH, Li JH, Shao P, Zhou H, Chen YQ, et al. (2011) starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. Nucleic Acids Res 39: D202-209.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Yang, J.H.1
Li, J.H.2
Shao, P.3
Zhou, H.4
Chen, Y.Q.5
-
40
-
-
84884152199
-
Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching
-
Zhang YC, Yu Y, Wang CY, Li ZY, Liu Q, et al. (2013) Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching. Nat Biotechnol 31: 848-852.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 848-852
-
-
Zhang, Y.C.1
Yu, Y.2
Wang, C.Y.3
Li, Z.Y.4
Liu, Q.5
-
41
-
-
84862986116
-
Phylogeny: Rewriting evolution
-
Dolgin E (2012) Phylogeny: Rewriting evolution. Nature 486: 460-462.
-
(2012)
Nature
, vol.486
, pp. 460-462
-
-
Dolgin, E.1
-
42
-
-
79957741638
-
Pseudogene-derived small interference RNAs regulate gene expression in African Trypanosoma brucei
-
Wen YZ, Zheng LL, Liao JY, Wang MH, Wei Y, et al. (2011) Pseudogene-derived small interference RNAs regulate gene expression in African Trypanosoma brucei. Proc Natl Acad Sci U S A 108: 8345-8350.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 8345-8350
-
-
Wen, Y.Z.1
Zheng, L.L.2
Liao, J.Y.3
Wang, M.H.4
Wei, Y.5
-
43
-
-
84879303464
-
Comparative transcriptome analysis of small noncoding RNAs in different stages of Trypanosoma brucei
-
Zheng LL, Wen YZ, Yang JH, Liao JY, Shao P, et al. (2013) Comparative transcriptome analysis of small noncoding RNAs in different stages of Trypanosoma brucei. RNA 19: 863-875.
-
(2013)
RNA
, vol.19
, pp. 863-875
-
-
Zheng, L.L.1
Wen, Y.Z.2
Yang, J.H.3
Liao, J.Y.4
Shao, P.5
-
44
-
-
13444252847
-
Rfam: Annotating non-coding RNAs in complete genomes
-
DOI 10.1093/nar/gki081
-
Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, et al. (2005) Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Research 33: D121-D124. (Pubitemid 40207843)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.DATABASE ISS.
-
-
Griffiths-Jones, S.1
Moxon, S.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
Bateman, A.6
|