-
1
-
-
0642285627
-
The microRNA world: Small is mighty
-
DOI 10.1016/j.tibs.2003.08.005, PII S0968000403002147
-
Nelson P, Kiriakidou M, Sharma A, Maniataki E, Mourelatos Z. The microRNA world: small is mighty. Trends Biochem Sci 2003; 28:534-40. (Pubitemid 38366279)
-
(2003)
Trends in Biochemical Sciences
, vol.28
, Issue.10
, pp. 534-540
-
-
Nelson, P.1
Kiriakidou, M.2
Sharma, A.3
Maniataki, E.4
Mourelatos, Z.5
-
2
-
-
34447107760
-
The Mirtron Pathway Generates microRNA-Class Regulatory RNAs in Drosophila
-
DOI 10.1016/j.cell.2007.06.028, PII S0092867407007957
-
Okamura K, Hagen JW, Duan H, Tyler DM, Lai EC. The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila. Cell 2007; 130:89-100. (Pubitemid 47031325)
-
(2007)
Cell
, vol.130
, Issue.1
, pp. 89-100
-
-
Okamura, K.1
Hagen, J.W.2
Duan, H.3
Tyler, D.M.4
Lai, E.C.5
-
3
-
-
1842608548
-
MicroRNA precursors in motion: Exportin-5 mediates their nuclear export
-
DOI 10.1016/j.tcb.2004.02.006, PII S0962892404000534
-
Kim VN. MicroRNA precursors in motion: exportin-5 mediates their nuclear export. Trends Cell Biol 2004; 14:156-9. (Pubitemid 38447114)
-
(2004)
Trends in Cell Biology
, vol.14
, Issue.4
, pp. 156-159
-
-
Kim, V.N.1
-
4
-
-
0141843656
-
The nuclear RNase III Drosha initiates microRNA processing
-
DOI 10.1038/nature01957
-
Lee Y, Ahn C, Han J, Choi H, Kim J, Yim J, et al. The nuclear RNase III Drosha initiates microRNA processing. Nature 2003; 425:415-9. (Pubitemid 37187272)
-
(2003)
Nature
, vol.425
, Issue.6956
, pp. 415-419
-
-
Lee, Y.1
Ahn, C.2
Han, J.3
Choi, H.4
Kim, J.5
Yim, J.6
Lee, J.7
Provost, P.8
Radmark, O.9
Kim, S.10
Kim, V.N.11
-
6
-
-
35348821616
-
MicroRNAs in vertebrate physiology and human disease
-
Chang TC, Mendell JT. microRNAs in vertebrate physiology and human disease. Annu Rev Genomics Hum Genet 2007; 8:215-39.
-
(2007)
Annu Rev Genomics Hum Genet
, vol.8
, pp. 215-239
-
-
Chang, T.C.1
Mendell, J.T.2
-
7
-
-
22144461002
-
miRNAs, cancer, and stem cell division
-
DOI 10.1016/j.cell.2005.06.036, PII S0092867405006550
-
Croce CM, Calin GA. miRNAs, cancer and stem cell division. Cell 2005; 122:6-7. (Pubitemid 40977933)
-
(2005)
Cell
, vol.122
, Issue.1
, pp. 6-7
-
-
Croce, C.M.1
Calin, G.A.2
-
8
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism and function
-
Bartel DP. MicroRNAs: genomics, biogenesis, mechanism and function. Cell 2004; 116:281-97.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
10
-
-
0037447334
-
The microRNAs of Caenorhabditis elegans
-
DOI 10.1101/gad.1074403
-
Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, et al. The microRNAs of Caenorhabditis elegans. Genes Dev 2003; 17:991-1008. (Pubitemid 36459452)
-
(2003)
Genes and Development
, vol.17
, Issue.8
, pp. 991-1008
-
-
Lim, L.P.1
Lau, N.C.2
Weinstein, E.G.3
Abdelhakim, A.4
Yekta, S.5
Rhoades, M.W.6
Burge, C.B.7
Bartel, D.P.8
-
11
-
-
0037423845
-
Vertebrate microRNA genes
-
DOI 10.1126/science.1080372
-
Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP. Vertebrate microRNA genes. Science 2003; 299:1540. (Pubitemid 36297696)
-
(2003)
Science
, vol.299
, Issue.5612
, pp. 1540
-
-
Lim, L.P.1
Glasner, M.E.2
Yekta, S.3
Burge, C.B.4
Bartel, D.P.5
-
12
-
-
24644476482
-
MicroRNA identification based on sequence and structure alignment
-
DOI 10.1093/bioinformatics/bti562
-
Wang X, Zhang J, Li F, Gu J, He T, Zhang X, et al. MicroRNA identification based on sequence and structure alignment. Bioinformatics 2005; 21:3610-4. (Pubitemid 41264095)
-
(2005)
Bioinformatics
, vol.21
, Issue.18
, pp. 3610-3614
-
-
Wang, X.1
Zhang, J.2
Li, F.3
Gu, J.4
He, T.5
Zhang, X.6
Li, Y.7
-
13
-
-
30344447264
-
Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine
-
Xue C, Li F, He T, Liu GP, Li Y, Zhang X. Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine. BMC Bioinformatics 2005; 6:310.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 310
-
-
Xue, C.1
Li, F.2
He, T.3
Liu, G.P.4
Li, Y.5
Zhang, X.6
-
14
-
-
34447309058
-
De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures
-
DOI 10.1093/bioinformatics/btm026
-
Ng KLS, Mishra SK. De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures. Bioinformatics 2007; 23:1321-30. (Pubitemid 47050513)
-
(2007)
Bioinformatics
, vol.23
, Issue.11
, pp. 1321-1330
-
-
Ng, K.L.S.1
Mishra, S.K.2
-
15
-
-
64549116289
-
microPred: effective classification of pre-miRNAs for human miRNA gene prediction
-
Batuwita R, Palade V. microPred: effective classification of pre-miRNAs for human miRNA gene prediction. Bioinformatics 2009; 25:989-95.
-
(2009)
Bioinformatics
, vol.25
, pp. 989-995
-
-
Batuwita, R.1
Palade, V.2
-
16
-
-
34547596338
-
MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features
-
Jiang P, Wu H, Wang W, Ma W, Sun X, Lu Z. MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. Nucleic Acids Res 2007; 35:339-44.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 339-344
-
-
Jiang, P.1
Wu, H.2
Wang, W.3
Ma, W.4
Sun, X.5
Lu, Z.6
-
17
-
-
33747814183
-
ProMiR II: A web server for the probabilistic prediction of clustered, nonclustered, conserved and nonconserved microRNAs
-
Nam JW, Kim J, Kim SK, Zhang BT. ProMiR II: a web server for the probabilistic prediction of clustered, nonclustered, conserved and nonconserved microRNAs. Nucleic Acids Res 2006; 34:455-8.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 455-458
-
-
Nam, J.W.1
Kim, J.2
Kim, S.K.3
Zhang, B.T.4
-
18
-
-
79952200065
-
Utilization of SSCprofiler to predict a new miRNA gene
-
Oulas A, Poirazi P. Utilization of SSCprofiler to predict a new miRNA gene. Methods Mol Biol 676:243-52.
-
Methods Mol Biol
, vol.676
, pp. 243-252
-
-
Oulas, A.1
Poirazi, P.2
-
19
-
-
67249093200
-
Prediction of novel microRNA genes in cancer-associated genomic regions- A combined computational and experimental approach
-
Oulas A, Boutla A, Gkirtzou K, Reczko M, Kalantidis K, Poirazi P. Prediction of novel microRNA genes in cancer-associated genomic regions - a combined computational and experimental approach. Nucleic Acids Res 2009; 37:3276-87.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 3276-3287
-
-
Oulas, A.1
Boutla, A.2
Gkirtzou, K.3
Reczko, M.4
Kalantidis, K.5
Poirazi, P.6
-
20
-
-
77951652329
-
New syntax to describe local continuous structure-sequence information for recognizing new pre-miRNAs
-
Wang M, Song X, Han P, Li W, Jiang B. New syntax to describe local continuous structure-sequence information for recognizing new pre-miRNAs. J Theor Biol 2010; 264:578-84.
-
(2010)
J Theor Biol
, vol.264
, pp. 578-584
-
-
Wang, M.1
Song, X.2
Han, P.3
Li, W.4
Jiang, B.5
-
21
-
-
46249103973
-
Stem cell transcriptome profiling via massive-scale mRNA sequencing
-
DOI 10.1038/nmeth.1223, PII NMETH.1223
-
Cloonan N, Forrest AR, Kolle G, Gardiner BB, Faulkner GJ, Brown MK, et al. Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat Methods 2008; 5:613-9. (Pubitemid 351911866)
-
(2008)
Nature Methods
, vol.5
, Issue.7
, pp. 613-619
-
-
Cloonan, N.1
Forrest, A.R.R.2
Kolle, G.3
Gardiner, B.B.A.4
Faulkner, G.J.5
Brown, M.K.6
Taylor, D.F.7
Steptoe, A.L.8
Wani, S.9
Bethel, G.10
Robertson, A.J.11
Perkins, A.C.12
Bruce, S.J.13
Lee, C.C.14
Ranade, S.S.15
Peckham, H.E.16
Manning, J.M.17
McKernan, K.J.18
Grimmond, S.M.19
-
22
-
-
39649117755
-
The impact of next-generation sequencing technology on genetics
-
Mardis ER. The impact of next-generation sequencing technology on genetics. Trends Genet 2008; 24:133-41.
-
(2008)
Trends Genet
, vol.24
, pp. 133-141
-
-
Mardis, E.R.1
-
23
-
-
53649100100
-
The development and impact of 454 sequencing
-
Rothberg JM, Leamon JH. The development and impact of 454 sequencing. Nat Biotechnol 2008; 26:1117-24.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1117-1124
-
-
Rothberg, J.M.1
Leamon, J.H.2
-
24
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
DOI 10.1038/nbt1394, PII NBT1394
-
Friedländer MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, et al. Discovering microRNAs from deep sequencing data using miRDeep. Nat Biotechnol 2008; 26:407-15. (Pubitemid 351501815)
-
(2008)
Nature Biotechnology
, vol.26
, Issue.4
, pp. 407-415
-
-
Friedlander, M.R.1
Chen, W.2
Adamidi, C.3
Maaskola, J.4
Einspanier, R.5
Knespel, S.6
Rajewsky, N.7
-
25
-
-
16344396421
-
Accurate identification of alternatively spliced exons using support vector machine
-
DOI 10.1093/bioinformatics/bti132
-
Dror G, Sorek R, Shamir R. Accurate identification of alternatively spliced exons using support vector machine. Bioinformatics 2005; 21:897-901. (Pubitemid 40467908)
-
(2005)
Bioinformatics
, vol.21
, Issue.7
, pp. 897-901
-
-
Dror, G.1
Sorek, R.2
Shamir, R.3
-
26
-
-
0028249154
-
Prediction of RNA secondary structure by energy minimization
-
Zuker M. Prediction of RNA secondary structure by energy minimization. Methods Mol Biol 1994; 25:267-94.
-
(1994)
Methods Mol Biol
, vol.25
, pp. 267-294
-
-
Zuker, M.1
-
28
-
-
0031211090
-
A Decision-Theoretic Generalization of On-Line Learning and an Application to Boosting*
-
Freund Y, Schapire RE. A Decision-Theoretic Generalization of On-Line Learning and an Application to Boosting*. J Comput Syst Sci 1997; 55:21.
-
(1997)
J Comput Syst Sci
, vol.55
, pp. 21
-
-
Freund, Y.1
Schapire, R.E.2
-
29
-
-
33748947459
-
Under-Sampling Approaches for Improving Prediction of the Minority Class in an Imbalanced Dataset
-
Yen SJ, Lee YS. Under-Sampling Approaches for Improving Prediction of the Minority Class in an Imbalanced Dataset Lecture Notes in Control and Information Sciences 2006; 344:10.
-
(2006)
Lecture Notes in Control and Information Sciences
, vol.344
, pp. 10
-
-
Yen, S.J.1
Lee, Y.S.2
-
30
-
-
0023890867
-
Measuring the accuracy of diagnostic systems
-
Swets JA. Measuring the accuracy of diagnostic systems. Science 1988; 240:1285-93.
-
(1988)
Science
, vol.240
, pp. 1285-1293
-
-
Swets, J.A.1
-
31
-
-
54349089811
-
Identification of microRNA precursors with support vector machine and string kernel
-
Xu JH, Li F, Sun QF. Identification of microRNA precursors with support vector machine and string kernel. Genomics Proteomics Bioinformatics 2008; 6:121-8.
-
(2008)
Genomics Proteomics Bioinformatics
, vol.6
, pp. 121-128
-
-
Xu, J.H.1
Li, F.2
Sun, Q.F.3
-
32
-
-
67849114241
-
miRanalyzer: A microRNA detection and analysis tool for next-generation sequencing experiments
-
Hackenberg M, Sturm M, Langenberger D, Falcon-Perez JM, Aransay AM. miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments. Nucleic Acids Res 2009; 37:68-76.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 68-76
-
-
Hackenberg, M.1
Sturm, M.2
Langenberger, D.3
Falcon-Perez, J.M.4
Aransay, A.M.5
-
33
-
-
0035800521
-
A cellular function for the RNA-interference enzyme dicer in the maturation of the let-7 small temporal RNA
-
DOI 10.1126/science.1062961
-
Hutvagner G, McLachlan J, Pasquinelli AE, Balint E, Tuschl T, Zamore PD. A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science 2001; 293:834-8. (Pubitemid 32743968)
-
(2001)
Science
, vol.293
, Issue.5531
, pp. 834-838
-
-
Hutvagner, G.1
McLachlan, J.2
Pasquinelli, A.E.3
Balint, E.4
Tuschl, T.5
Zamore, P.D.6
-
34
-
-
11244251011
-
Plant and animal microRNAs: Similarities and differences
-
DOI 10.1007/s10142-005-0145-2
-
Millar AA, Waterhouse PM. Plant and animal microRNAs: similarities and differences. Funct Integr Genomics 2005; 5:129-35. (Pubitemid 40823254)
-
(2005)
Functional and Integrative Genomics
, vol.5
, Issue.3
, pp. 129-135
-
-
Millar, A.A.1
Waterhouse, P.M.2
-
35
-
-
17844391015
-
Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency
-
DOI 10.1261/rna.7220505
-
Clote P, Ferre F, Kranakis E, Krizanc D. Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency. RNA 2005; 11:578-91. (Pubitemid 40594326)
-
(2005)
RNA
, vol.11
, Issue.5
, pp. 578-591
-
-
Clote, P.1
Ferre, F.2
Kranakis, E.3
Krizanc, D.4
-
36
-
-
30744468557
-
Evidence that miRNAs are different from other RNAs
-
DOI 10.1007/s00018-005-5467-7
-
Zhang BH, Pan XP, Cox SB, Cobb GP, Anderson TA. Evidence that miRNAs are different from other RNAs. Cell Mol Life Sci 2006; 63:246-54. (Pubitemid 43100293)
-
(2006)
Cellular and Molecular Life Sciences
, vol.63
, Issue.2
, pp. 246-254
-
-
Zhang, B.H.1
Pan, X.P.2
Cox, S.B.3
Cobb, G.P.4
Anderson, T.A.5
-
37
-
-
34249772381
-
Fast folding and comparison of RNA secondary structures
-
Hofacker IL, Stadler PF, Bonhoeffer LS, Tacker M, Schuster P. Fast folding and comparison of RNA secondary structures. Monatshefte für Chemie/Chemical Monthly 1994; 125:167-88.
-
(1994)
Monatshefte für Chemie/Chemical Monthly
, vol.125
, pp. 167-188
-
-
Hofacker, I.L.1
Stadler, P.F.2
Bonhoeffer, L.S.3
Tacker, M.4
Schuster, P.5
-
38
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002; 30:207-10. (Pubitemid 34679544)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.1
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
39
-
-
0037250168
-
The UCSC Genome Browser Database
-
DOI 10.1093/nar/gkg129
-
Karolchik D, Baertsch R, Diekhans M, Furey TS, Hinrichs A, Lu YT, et al. The UCSC Genome Browser Database. Nucleic Acids Res 2003; 31:51-4. (Pubitemid 36150331)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 51-54
-
-
Karolchik, D.1
Baertsch, R.2
Diekhans, M.3
Furey, T.S.4
Hinrichs, A.5
Lu, Y.T.6
Roskin, K.M.7
Schwartz, M.8
Sugnet, C.W.9
Thomas, D.J.10
Weber, R.J.11
Haussler, D.12
Kent, W.J.13
-
40
-
-
19044399340
-
A new approach in the BCI research based on fractal dimension as feature and Adaboost as classifier
-
DOI 10.1088/1741-2560/1/4/004, PII S1741256004776168
-
Boostani R, Moradi MH. A new approach in the BCI research based on fractal dimension as feature and Adaboost as classifier. J Neural Eng 2004; 1:212-7. (Pubitemid 41079655)
-
(2004)
Journal of Neural Engineering
, vol.1
, Issue.4
, pp. 212-217
-
-
Boostani, R.1
Moradi, M.H.2
-
41
-
-
68349147943
-
Prediction of interaction between small molecule and enzyme using adaboost
-
Niu B, Jin Y, Lu L, Fen K, Gu L, He Z, et al. Prediction of interaction between small molecule and enzyme using AdaBoost. Mol Divers 2009; 13:313-20.
-
(2009)
Mol Divers
, vol.13
, pp. 313-320
-
-
Niu, B.1
Jin, Y.2
Lu, L.3
Fen, K.4
Gu, L.5
He, Z.6
|