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Volumn 12, Issue , 2012, Pages

Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets

Author keywords

Abiotic stress; Gene expression; MIR gene; MiRNA; MiRNA editing; Next generation sequencing; Rubber tree; Transcription; Transcriptome

Indexed keywords

HEVEA; HEVEA BRASILIENSIS;

EID: 84861872022     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-12-18     Document Type: Article
Times cited : (47)

References (82)
  • 1
    • 0002361096 scopus 로고
    • Anatomical organization of the laticiferous system in the bark
    • Boca Raton (FL): CRC Press, Chrestin H
    • De Faÿ E, Jacob JL, D'Auzac J, Jacob JL. Anatomical organization of the laticiferous system in the bark. Physiology of rubber tree latex 1989, 4-14. Boca Raton (FL): CRC Press, Chrestin H.
    • (1989) Physiology of rubber tree latex , pp. 4-14
    • De Faÿ, E.1    Jacob, J.L.2    D'Auzac, J.3    Jacob, J.L.4
  • 2
    • 70449519961 scopus 로고    scopus 로고
    • Long-term effect of ethylene stimulation on the yield of rubber trees is linked to latex cell biochemistry
    • Lacote R, Gabla O, Obouayeba S, Eschbach JM, Rivano F, Dian K, Gohet E. Long-term effect of ethylene stimulation on the yield of rubber trees is linked to latex cell biochemistry. Field Crop Res 2010, 115:94-98.
    • (2010) Field Crop Res , vol.115 , pp. 94-98
    • Lacote, R.1    Gabla, O.2    Obouayeba, S.3    Eschbach, J.M.4    Rivano, F.5    Dian, K.6    Gohet, E.7
  • 3
    • 61449558712 scopus 로고    scopus 로고
    • Molecular identification and characterization of a gene associated with the onset of tapping panel dryness (TPD) syndrome in rubber tree (Hevea brasiliensis Muell.) by mRNA differential display
    • 10.1007/s12033-008-9095-y, 18726169
    • Venkatachalam P, Thulaseedharan A, Raghothama K. Molecular identification and characterization of a gene associated with the onset of tapping panel dryness (TPD) syndrome in rubber tree (Hevea brasiliensis Muell.) by mRNA differential display. Mol Biotechnol 2009, 41(1):42-52. 10.1007/s12033-008-9095-y, 18726169.
    • (2009) Mol Biotechnol , vol.41 , Issue.1 , pp. 42-52
    • Venkatachalam, P.1    Thulaseedharan, A.2    Raghothama, K.3
  • 4
    • 0000508971 scopus 로고
    • Biochemical aspects of bark dryness induced by overstimulation of rubber trees with Ethrel
    • Boca Raton (FL): CRC Press, D'Auzac-J JJL, Chrestin H
    • Chrestin H. Biochemical aspects of bark dryness induced by overstimulation of rubber trees with Ethrel. Physiology of rubber tree latex 1989, 432-439. Boca Raton (FL): CRC Press, D'Auzac-J JJL, Chrestin H.
    • (1989) Physiology of rubber tree latex , pp. 432-439
    • Chrestin, H.1
  • 5
    • 0011904243 scopus 로고
    • Role of the lutoidic tonoplast in the senescence and degeneration of the laticifer of Hevea brasiliensis
    • Chrestin H, Bangrantz J, D'Auzac J, Jacob JL. Role of the lutoidic tonoplast in the senescence and degeneration of the laticifer of Hevea brasiliensis. Zeitschrift-für-Pflanzenphysiologie 1984, 114(3):261-268.
    • (1984) Zeitschrift-für-Pflanzenphysiologie , vol.114 , Issue.3 , pp. 261-268
    • Chrestin, H.1    Bangrantz, J.2    D'Auzac, J.3    Jacob, J.L.4
  • 6
    • 83055172937 scopus 로고    scopus 로고
    • Respiratory burst oxidases: the engines of ROS signaling
    • 10.1016/j.pbi.2011.07.014, 21862390
    • Suzuki N, Miller G, Morales J, Shulaev V, Torres MA, Mittler R. Respiratory burst oxidases: the engines of ROS signaling. Curr Opin Plant Biol 2011, 14(6):691-699. 10.1016/j.pbi.2011.07.014, 21862390.
    • (2011) Curr Opin Plant Biol , vol.14 , Issue.6 , pp. 691-699
    • Suzuki, N.1    Miller, G.2    Morales, J.3    Shulaev, V.4    Torres, M.A.5    Mittler, R.6
  • 7
    • 84855340218 scopus 로고    scopus 로고
    • ROS and redox signalling in the response of plants to abiotic stress
    • 10.1111/j.1365-3040.2011.02336.x, 21486305
    • Suzuki N, Koussevitzky S, Mittler R, Miller G. ROS and redox signalling in the response of plants to abiotic stress. Plant Cell Environ 2012, 35(2):259-270. 10.1111/j.1365-3040.2011.02336.x, 21486305.
    • (2012) Plant Cell Environ , vol.35 , Issue.2 , pp. 259-270
    • Suzuki, N.1    Koussevitzky, S.2    Mittler, R.3    Miller, G.4
  • 9
    • 77952031014 scopus 로고    scopus 로고
    • Reactive oxygen species in abiotic stress signaling
    • 10.1111/j.1399-3054.2009.01321.x, 20028478
    • Jaspers P, Kangasjarvi J. Reactive oxygen species in abiotic stress signaling. Physiol Plant 2010, 138(4):405-413. 10.1111/j.1399-3054.2009.01321.x, 20028478.
    • (2010) Physiol Plant , vol.138 , Issue.4 , pp. 405-413
    • Jaspers, P.1    Kangasjarvi, J.2
  • 10
    • 34447550259 scopus 로고    scopus 로고
    • The role of small RNAs in abiotic stress
    • 10.1016/j.febslet.2007.04.007, 17451688
    • Phillips JR, Dalmay T, Bartels D. The role of small RNAs in abiotic stress. FEBS Lett 2007, 581(19):3592-3597. 10.1016/j.febslet.2007.04.007, 17451688.
    • (2007) FEBS Lett , vol.581 , Issue.19 , pp. 3592-3597
    • Phillips, J.R.1    Dalmay, T.2    Bartels, D.3
  • 11
    • 34347263491 scopus 로고    scopus 로고
    • Small RNAs as big players in plant abiotic stress responses and nutrient deprivation
    • 10.1016/j.tplants.2007.05.001, 17573231
    • Sunkar R, Chinnusamy V, Zhu J, Zhu JK. Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends Plant Sci 2007, 12(7):301-309. 10.1016/j.tplants.2007.05.001, 17573231.
    • (2007) Trends Plant Sci , vol.12 , Issue.7 , pp. 301-309
    • Sunkar, R.1    Chinnusamy, V.2    Zhu, J.3    Zhu, J.K.4
  • 12
    • 47249095055 scopus 로고    scopus 로고
    • Stress-responsive microRNAs in Populus
    • 10.1111/j.1365-313X.2008.03497.x, 18363789
    • Lu S, Sun YH, Chiang VL. Stress-responsive microRNAs in Populus. Plant J 2008, 55(1):131-151. 10.1111/j.1365-313X.2008.03497.x, 18363789.
    • (2008) Plant J , vol.55 , Issue.1 , pp. 131-151
    • Lu, S.1    Sun, Y.H.2    Chiang, V.L.3
  • 13
    • 55049139974 scopus 로고    scopus 로고
    • The role of microRNAs and other endogenous small RNAs in plant stress responses
    • Shukla LI, Chinnusamy V, Sunkar R. The role of microRNAs and other endogenous small RNAs in plant stress responses. Biochim Biophys Acta 2008, 1779(11):743-748.
    • (2008) Biochim Biophys Acta , vol.1779 , Issue.11 , pp. 743-748
    • Shukla, L.I.1    Chinnusamy, V.2    Sunkar, R.3
  • 14
    • 78349232390 scopus 로고    scopus 로고
    • MicroRNA gene regulation cascades during early stages of plant development
    • 10.1093/pcp/pcq154, 20937608
    • Nonogaki H. MicroRNA gene regulation cascades during early stages of plant development. Plant Cell Physiol 2010, 51(11):1840-1846. 10.1093/pcp/pcq154, 20937608.
    • (2010) Plant Cell Physiol , vol.51 , Issue.11 , pp. 1840-1846
    • Nonogaki, H.1
  • 15
    • 77952884377 scopus 로고    scopus 로고
    • Profiling of cold-stress-responsive miRNAs in rice by microarrays
    • 10.1016/j.gene.2010.03.011, 20350593
    • De-Kang L, Bai X, Li Y, Ding XD, Ge Y, Cai H, Ji W, Wu N, Zhu YM. Profiling of cold-stress-responsive miRNAs in rice by microarrays. Gene 2010, 459(1-2):39-47. 10.1016/j.gene.2010.03.011, 20350593.
    • (2010) Gene , vol.459 , Issue.1-2 , pp. 39-47
    • De-Kang, L.1    Bai, X.2    Li, Y.3    Ding, X.D.4    Ge, Y.5    Cai, H.6    Ji, W.7    Wu, N.8    Zhu, Y.M.9
  • 16
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • 10.1016/0092-8674(93)90529-Y, 8252621
    • Lee RC, Feinbaum RL, Ambros V. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 1993, 75(5):843-854. 10.1016/0092-8674(93)90529-Y, 8252621.
    • (1993) Cell , vol.75 , Issue.5 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 17
    • 0035984059 scopus 로고    scopus 로고
    • Endogenous and silencing-associated small RNAs in plants
    • 10.1105/tpc.003210, 150710, 12119378
    • Llave C, Kasschau KD, Rector MA, Carrington JC. Endogenous and silencing-associated small RNAs in plants. Plant Cell 2002, 14(7):1605-1619. 10.1105/tpc.003210, 150710, 12119378.
    • (2002) Plant Cell , vol.14 , Issue.7 , pp. 1605-1619
    • Llave, C.1    Kasschau, K.D.2    Rector, M.A.3    Carrington, J.C.4
  • 18
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • 10.1016/S0092-8674(04)00045-5, 14744438
    • Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116(2):281-297. 10.1016/S0092-8674(04)00045-5, 14744438.
    • (2004) Cell , vol.116 , Issue.2 , pp. 281-297
    • Bartel, D.P.1
  • 19
    • 0038299558 scopus 로고    scopus 로고
    • Role of microRNAs in plant and animal development
    • 10.1126/science.1085242, 12869753
    • Carrington JC, Ambros V. Role of microRNAs in plant and animal development. Science 2003, 301(5631):336-338. 10.1126/science.1085242, 12869753.
    • (2003) Science , vol.301 , Issue.5631 , pp. 336-338
    • Carrington, J.C.1    Ambros, V.2
  • 20
    • 68949115601 scopus 로고    scopus 로고
    • Biochemical evidence for translational repression by Arabidopsis microRNAs
    • 10.1105/tpc.108.063412, 2714937, 19531599
    • Lanet E, Delannoy E, Sormani R, Floris M, Brodersen P, Crete P, Voinnet O, Robaglia C. Biochemical evidence for translational repression by Arabidopsis microRNAs. Plant Cell 2009, 21(6):1762-1768. 10.1105/tpc.108.063412, 2714937, 19531599.
    • (2009) Plant Cell , vol.21 , Issue.6 , pp. 1762-1768
    • Lanet, E.1    Delannoy, E.2    Sormani, R.3    Floris, M.4    Brodersen, P.5    Crete, P.6    Voinnet, O.7    Robaglia, C.8
  • 21
    • 29144527030 scopus 로고    scopus 로고
    • Plant microRNA: a small regulatory molecule with big impact
    • 10.1016/j.ydbio.2005.10.036, 16325172
    • Zhang B, Pan X, Cobb GP, Anderson TA. Plant microRNA: a small regulatory molecule with big impact. Dev Biol 2006, 289(1):3-16. 10.1016/j.ydbio.2005.10.036, 16325172.
    • (2006) Dev Biol , vol.289 , Issue.1 , pp. 3-16
    • Zhang, B.1    Pan, X.2    Cobb, G.P.3    Anderson, T.A.4
  • 22
    • 26944437949 scopus 로고    scopus 로고
    • MicroRNA biogenesis and function in plants
    • 10.1016/j.febslet.2005.07.071, 16144699
    • Chen X. MicroRNA biogenesis and function in plants. FEBS Lett 2005, 579(26):5923-5931. 10.1016/j.febslet.2005.07.071, 16144699.
    • (2005) FEBS Lett , vol.579 , Issue.26 , pp. 5923-5931
    • Chen, X.1
  • 23
    • 33745925868 scopus 로고    scopus 로고
    • The small RNA world of plants
    • 10.1111/j.1469-8137.2006.01806.x, 16866953
    • Bonnet E, Van de Peer Y, Rouze P. The small RNA world of plants. New Phytol 2006, 171(3):451-468. 10.1111/j.1469-8137.2006.01806.x, 16866953.
    • (2006) New Phytol , vol.171 , Issue.3 , pp. 451-468
    • Bonnet, E.1    Van de Peer, Y.2    Rouze, P.3
  • 24
    • 18344373363 scopus 로고    scopus 로고
    • Small RNAs: classification, biogenesis, and function
    • 10.1016/j.molcel.2005.05.026, 15750334
    • Kim VN. Small RNAs: classification, biogenesis, and function. Mol Cells 2005, 19(1):1-15. 10.1016/j.molcel.2005.05.026, 15750334.
    • (2005) Mol Cells , vol.19 , Issue.1 , pp. 1-15
    • Kim, V.N.1
  • 25
    • 0038076109 scopus 로고    scopus 로고
    • Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation
    • 10.1016/S0960-9822(03)00281-1, 12725739
    • Xie Z, Kasschau KD, Carrington JC. Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation. Curr Biol 2003, 13(9):784-789. 10.1016/S0960-9822(03)00281-1, 12725739.
    • (2003) Curr Biol , vol.13 , Issue.9 , pp. 784-789
    • Xie, Z.1    Kasschau, K.D.2    Carrington, J.C.3
  • 26
    • 0036834508 scopus 로고    scopus 로고
    • DICER-LIKE1: blind men and elephants in Arabidopsis development
    • 10.1016/S1360-1385(02)02355-5, 12417148
    • Schauer SE, Jacobsen SE, Meinke DW, Ray A. DICER-LIKE1: blind men and elephants in Arabidopsis development. Trends Plant Sci 2002, 7(11):487-491. 10.1016/S1360-1385(02)02355-5, 12417148.
    • (2002) Trends Plant Sci , vol.7 , Issue.11 , pp. 487-491
    • Schauer, S.E.1    Jacobsen, S.E.2    Meinke, D.W.3    Ray, A.4
  • 27
    • 0037738567 scopus 로고    scopus 로고
    • HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis
    • 10.1242/dev.00362, 12620976
    • Bollman KM, Aukerman MJ, Park MY, Hunter C, Berardini TZ, Poethig RS. HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis. Development 2003, 130(8):1493-1504. 10.1242/dev.00362, 12620976.
    • (2003) Development , vol.130 , Issue.8 , pp. 1493-1504
    • Bollman, K.M.1    Aukerman, M.J.2    Park, M.Y.3    Hunter, C.4    Berardini, T.Z.5    Poethig, R.S.6
  • 28
  • 29
    • 77951974552 scopus 로고    scopus 로고
    • DNA Methylation Mediated by a MicroRNA Pathway
    • 10.1016/j.molcel.2010.03.008, 20381393
    • Wu L, Zhou H, Zhang Q, Zhang J, Ni F, Liu C, Qi Y. DNA Methylation Mediated by a MicroRNA Pathway. Mol Cell 2010, 38(3):465-475. 10.1016/j.molcel.2010.03.008, 20381393.
    • (2010) Mol Cell , vol.38 , Issue.3 , pp. 465-475
    • Wu, L.1    Zhou, H.2    Zhang, Q.3    Zhang, J.4    Ni, F.5    Liu, C.6    Qi, Y.7
  • 30
    • 65849172363 scopus 로고    scopus 로고
    • Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications
    • 10.1093/nar/gkp093, 2677864, 19255090
    • Ebhardt HA, Tsang HH, Dai DC, Liu Y, Bostan B, Fahlman RP. Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications. Nucleic Acids Res 2009, 37(8):2461-2470. 10.1093/nar/gkp093, 2677864, 19255090.
    • (2009) Nucleic Acids Res , vol.37 , Issue.8 , pp. 2461-2470
    • Ebhardt, H.A.1    Tsang, H.H.2    Dai, D.C.3    Liu, Y.4    Bostan, B.5    Fahlman, R.P.6
  • 31
    • 80053208703 scopus 로고    scopus 로고
    • Deep sequencing of microRNA precursors reveals extensive 3' end modification
    • 10.1261/rna.2713611, 21849429
    • Newman MA, Mani V, Hammond SM. Deep sequencing of microRNA precursors reveals extensive 3' end modification. RNA 2011, 17(10):1795-1803. 10.1261/rna.2713611, 21849429.
    • (2011) RNA , vol.17 , Issue.10 , pp. 1795-1803
    • Newman, M.A.1    Mani, V.2    Hammond, S.M.3
  • 32
    • 4043074968 scopus 로고    scopus 로고
    • Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
    • 10.1105/tpc.104.022830, 519194, 15258262
    • Sunkar R, Zhu JK. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 2004, 16(8):2001-2019. 10.1105/tpc.104.022830, 519194, 15258262.
    • (2004) Plant Cell , vol.16 , Issue.8 , pp. 2001-2019
    • Sunkar, R.1    Zhu, J.K.2
  • 33
    • 84856594225 scopus 로고    scopus 로고
    • Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants
    • Khraiwesh B, Zhu JK, Zhu J. Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants. Biochim Biophys Acta 2012, 1819(2):137-138.
    • (2012) Biochim Biophys Acta , vol.1819 , Issue.2 , pp. 137-138
    • Khraiwesh, B.1    Zhu, J.K.2    Zhu, J.3
  • 34
    • 33747505089 scopus 로고    scopus 로고
    • Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance
    • 10.1105/tpc.106.041673, 1533975, 16861386
    • Sunkar R, Kapoor A, Zhu JK. Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell 2006, 18(8):2051-2065. 10.1105/tpc.106.041673, 1533975, 16861386.
    • (2006) Plant Cell , vol.18 , Issue.8 , pp. 2051-2065
    • Sunkar, R.1    Kapoor, A.2    Zhu, J.K.3
  • 35
    • 61349171237 scopus 로고    scopus 로고
    • Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis
    • 10.1007/s00425-009-0889-3, 19148671
    • Jagadeeswaran G, Saini A, Sunkar R. Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis. Planta 2009, 229(4):1009-1014. 10.1007/s00425-009-0889-3, 19148671.
    • (2009) Planta , vol.229 , Issue.4 , pp. 1009-1014
    • Jagadeeswaran, G.1    Saini, A.2    Sunkar, R.3
  • 36
  • 39
    • 38949194266 scopus 로고    scopus 로고
    • Computational prediction of rice (Oryza sativa) miRNA targets
    • 10.1016/S1672-0229(08)60007-8, 18267301
    • Archak S, Nagaraju J. Computational prediction of rice (Oryza sativa) miRNA targets. Genomics Proteomics Bioinformatics 2007, 5(3-4):196-206. 10.1016/S1672-0229(08)60007-8, 18267301.
    • (2007) Genomics Proteomics Bioinformatics , vol.5 , Issue.3-4 , pp. 196-206
    • Archak, S.1    Nagaraju, J.2
  • 40
    • 22144464033 scopus 로고    scopus 로고
    • Cloning and characterization of microRNAs from rice
    • 10.1105/tpc.105.031682, 1091763, 15805478
    • Sunkar R, Girke T, Jain PK, Zhu JK. Cloning and characterization of microRNAs from rice. Plant Cell 2005, 17(5):1397-1411. 10.1105/tpc.105.031682, 1091763, 15805478.
    • (2005) Plant Cell , vol.17 , Issue.5 , pp. 1397-1411
    • Sunkar, R.1    Girke, T.2    Jain, P.K.3    Zhu, J.K.4
  • 41
    • 41149120780 scopus 로고    scopus 로고
    • Conservation and divergence of microRNAs in Populus
    • 10.1186/1471-2164-8-481, 2270843, 18166134
    • Barakat A, Wall PK, Diloreto S, Depamphilis CW, Carlson JE. Conservation and divergence of microRNAs in Populus. BMC Genomics 2007, 8:481. 10.1186/1471-2164-8-481, 2270843, 18166134.
    • (2007) BMC Genomics , vol.8 , pp. 481
    • Barakat, A.1    Wall, P.K.2    Diloreto, S.3    Depamphilis, C.W.4    Carlson, J.E.5
  • 42
    • 84865429035 scopus 로고    scopus 로고
    • MicroRNAs in the moss Physcomitrella patens
    • DOI: 10.1007/s11103-011-9761-5
    • Arazi T. MicroRNAs in the moss Physcomitrella patens. Plant Mol Biol DOI: 10.1007/s11103-011-9761-5.
    • Plant Mol Biol
    • Arazi, T.1
  • 43
    • 76949103466 scopus 로고    scopus 로고
    • High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    • 10.1186/1471-2164-10-558, 2822795, 19939267
    • Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, et al. High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera. BMC Genomics 2009, 10:558. 10.1186/1471-2164-10-558, 2822795, 19939267.
    • (2009) BMC Genomics , vol.10 , pp. 558
    • Mica, E.1    Piccolo, V.2    Delledonne, M.3    Ferrarini, A.4    Pezzotti, M.5    Casati, C.6    Del Fabbro, C.7    Valle, G.8    Policriti, A.9    Morgante, M.10
  • 44
    • 56649120500 scopus 로고    scopus 로고
    • Identification of soybean microRNAs and their targets
    • 10.1007/s00425-008-0818-x, 18815805
    • Zhang B, Pan X, Stellwag EJ. Identification of soybean microRNAs and their targets. Planta 2008, 229(1):161-182. 10.1007/s00425-008-0818-x, 18815805.
    • (2008) Planta , vol.229 , Issue.1 , pp. 161-182
    • Zhang, B.1    Pan, X.2    Stellwag, E.J.3
  • 45
  • 46
    • 50849113068 scopus 로고    scopus 로고
    • Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
    • 10.1016/j.gene.2008.05.023, 18602455
    • Zhang J, Zeng R, Chen J, Liu X, Liao Q. Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill. Gene 2008, 423(1):1-7. 10.1016/j.gene.2008.05.023, 18602455.
    • (2008) Gene , vol.423 , Issue.1 , pp. 1-7
    • Zhang, J.1    Zeng, R.2    Chen, J.3    Liu, X.4    Liao, Q.5
  • 47
    • 33947411951 scopus 로고    scopus 로고
    • Computational identification of novel microRNAs and targets in Brassica napus
    • 10.1016/j.febslet.2007.02.074, 17367786
    • Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM. Computational identification of novel microRNAs and targets in Brassica napus. FEBS Lett 2007, 581(7):1464-1474. 10.1016/j.febslet.2007.02.074, 17367786.
    • (2007) FEBS Lett , vol.581 , Issue.7 , pp. 1464-1474
    • Xie, F.L.1    Huang, S.Q.2    Guo, K.3    Xiang, A.L.4    Zhu, Y.Y.5    Nie, L.6    Yang, Z.M.7
  • 49
    • 77950360655 scopus 로고    scopus 로고
    • Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    • 10.1093/nar/gkp1035, 2817462, 19942686
    • Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M. Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants. Nucleic Acids Res 2010, 38(3):981-995. 10.1093/nar/gkp1035, 2817462, 19942686.
    • (2010) Nucleic Acids Res , vol.38 , Issue.3 , pp. 981-995
    • Zeng, C.1    Wang, W.2    Zheng, Y.3    Chen, X.4    Bo, W.5    Song, S.6    Zhang, W.7    Peng, M.8
  • 50
    • 78650053705 scopus 로고    scopus 로고
    • Naturally occurring variations in sequence length creates microRNA isoforms that differ in argonaute effector complex specificity
    • Ebhardt HA, Fedynak A, Fahlman RP. Naturally occurring variations in sequence length creates microRNA isoforms that differ in argonaute effector complex specificity. Silence 2009, 1(1):12.
    • (2009) Silence , vol.1 , Issue.1 , pp. 12
    • Ebhardt, H.A.1    Fedynak, A.2    Fahlman, R.P.3
  • 51
    • 39149086705 scopus 로고    scopus 로고
    • LeARN: a platform for detecting, clustering and annotating non-coding RNAs
    • 10.1186/1471-2105-9-21, 2241582, 18194551
    • Noirot C, Gaspin C, Schiex T, Gouzy J. LeARN: a platform for detecting, clustering and annotating non-coding RNAs. BMC Bioinformatics 2008, 9:21. 10.1186/1471-2105-9-21, 2241582, 18194551.
    • (2008) BMC Bioinformatics , vol.9 , pp. 21
    • Noirot, C.1    Gaspin, C.2    Schiex, T.3    Gouzy, J.4
  • 52
    • 33845688601 scopus 로고    scopus 로고
    • A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    • 10.1101/gad.1476406, 1698448, 17182867
    • Rajagopalan R, Vaucheret H, Trejo J, Bartel DP. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev 2006, 20(24):3407-3425. 10.1101/gad.1476406, 1698448, 17182867.
    • (2006) Genes Dev , vol.20 , Issue.24 , pp. 3407-3425
    • Rajagopalan, R.1    Vaucheret, H.2    Trejo, J.3    Bartel, D.P.4
  • 53
    • 41649102715 scopus 로고    scopus 로고
    • Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
    • 10.1101/gr.6897308, 2279245, 18323537
    • Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ. Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. Genome Res 2008, 18(4):571-584. 10.1101/gr.6897308, 2279245, 18323537.
    • (2008) Genome Res , vol.18 , Issue.4 , pp. 571-584
    • Morin, R.D.1    Aksay, G.2    Dolgosheina, E.3    Ebhardt, H.A.4    Magrini, V.5    Mardis, E.R.6    Sahinalp, S.C.7    Unrau, P.J.8
  • 54
    • 62549095240 scopus 로고    scopus 로고
    • High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis)
    • 10.1016/j.gene.2009.01.006, 19393185
    • Qiu D, Pan X, Wilson IW, Li F, Liu M, Teng W, Zhang B. High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis). Gene 2009, 436(1-2):37-44. 10.1016/j.gene.2009.01.006, 19393185.
    • (2009) Gene , vol.436 , Issue.1-2 , pp. 37-44
    • Qiu, D.1    Pan, X.2    Wilson, I.W.3    Li, F.4    Liu, M.5    Teng, W.6    Zhang, B.7
  • 55
    • 70350438585 scopus 로고    scopus 로고
    • Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    • 10.1186/1471-2164-10-449, 2759970, 19772667
    • Zhang J, Xu Y, Huan Q, Chong K. Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response. BMC Genomics 2009, 10:449. 10.1186/1471-2164-10-449, 2759970, 19772667.
    • (2009) BMC Genomics , vol.10 , pp. 449
    • Zhang, J.1    Xu, Y.2    Huan, Q.3    Chong, K.4
  • 56
    • 82255181303 scopus 로고    scopus 로고
    • Divergent DNA Methylation Patterns Associated with Abiotic Stress in Hevea brasiliensis
    • DOI: 10.1093/mp/ssr039
    • Uthup TK, Ravindran M, Bini K, Thakurdas S. Divergent DNA Methylation Patterns Associated with Abiotic Stress in Hevea brasiliensis. Mol Plant 2011, DOI: 10.1093/mp/ssr039.
    • (2011) Mol Plant
    • Uthup, T.K.1    Ravindran, M.2    Bini, K.3    Thakurdas, S.4
  • 57
    • 43149096961 scopus 로고    scopus 로고
    • In silico identification of conserved microRNAs in large number of diverse plant species
    • 10.1186/1471-2229-8-37, 2358906, 18416839
    • Sunkar R, Jagadeeswaran G. In silico identification of conserved microRNAs in large number of diverse plant species. BMC Plant Biol 2008, 8:37. 10.1186/1471-2229-8-37, 2358906, 18416839.
    • (2008) BMC Plant Biol , vol.8 , pp. 37
    • Sunkar, R.1    Jagadeeswaran, G.2
  • 58
    • 79953086307 scopus 로고    scopus 로고
    • Evolution and functional diversification of MIRNA genes
    • 10.1105/tpc.110.082784, 3077775, 21317375
    • Cuperus JT, Fahlgren N, Carrington JC. Evolution and functional diversification of MIRNA genes. Plant Cell 2011, 23(2):431-442. 10.1105/tpc.110.082784, 3077775, 21317375.
    • (2011) Plant Cell , vol.23 , Issue.2 , pp. 431-442
    • Cuperus, J.T.1    Fahlgren, N.2    Carrington, J.C.3
  • 59
    • 56649102410 scopus 로고    scopus 로고
    • Evolution of Arabidopsis MIR genes generates novel microRNA classes
    • 10.1093/nar/gkn670, 2582634, 18842626
    • Vazquez F, Blevins T, Ailhas J, Boller T, Meins F. Evolution of Arabidopsis MIR genes generates novel microRNA classes. Nucleic Acids Res 2008, 36(20):6429-6438. 10.1093/nar/gkn670, 2582634, 18842626.
    • (2008) Nucleic Acids Res , vol.36 , Issue.20 , pp. 6429-6438
    • Vazquez, F.1    Blevins, T.2    Ailhas, J.3    Boller, T.4    Meins, F.5
  • 60
    • 69249209638 scopus 로고    scopus 로고
    • Identification of microRNAs and their targets from Populus euphratica
    • 10.1016/j.bbrc.2009.07.161, 19664594
    • Li B, Yin W, Xia X. Identification of microRNAs and their targets from Populus euphratica. Biochem Biophys Res Commun 2009, 388(2):272-7. 10.1016/j.bbrc.2009.07.161, 19664594.
    • (2009) Biochem Biophys Res Commun , vol.388 , Issue.2 , pp. 272-277
    • Li, B.1    Yin, W.2    Xia, X.3
  • 61
    • 27744471144 scopus 로고    scopus 로고
    • Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    • 10.1105/tpc.105.033456, 1182482, 15994906
    • Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL. Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell 2005, 17(8):2186-2203. 10.1105/tpc.105.033456, 1182482, 15994906.
    • (2005) Plant Cell , vol.17 , Issue.8 , pp. 2186-2203
    • Lu, S.1    Sun, Y.H.2    Shi, R.3    Clark, C.4    Li, L.5    Chiang, V.L.6
  • 62
    • 71749092464 scopus 로고    scopus 로고
    • Two types of cis-acting elements control the abaxial epidermis-specific transcription of the MIR165a and MIR166a genes
    • 10.1016/j.febslet.2009.10.076, 19879265
    • Yao X, Wang H, Li H, Yuan Z, Li F, Yang L, Huang H. Two types of cis-acting elements control the abaxial epidermis-specific transcription of the MIR165a and MIR166a genes. FEBS Lett 2009, 583(22):3711-3717. 10.1016/j.febslet.2009.10.076, 19879265.
    • (2009) FEBS Lett , vol.583 , Issue.22 , pp. 3711-3717
    • Yao, X.1    Wang, H.2    Li, H.3    Yuan, Z.4    Li, F.5    Yang, L.6    Huang, H.7
  • 63
    • 77958543118 scopus 로고    scopus 로고
    • SQUAMOSA promoter-binding protein-like transcription factors: star players for plant growth and development
    • 10.1111/j.1744-7909.2010.00987.x, 20977652
    • Chen X, Zhang Z, Liu D, Zhang K, Li A, Mao L. SQUAMOSA promoter-binding protein-like transcription factors: star players for plant growth and development. J Integr Plant Biol 2010, 52(11):946-951. 10.1111/j.1744-7909.2010.00987.x, 20977652.
    • (2010) J Integr Plant Biol , vol.52 , Issue.11 , pp. 946-951
    • Chen, X.1    Zhang, Z.2    Liu, D.3    Zhang, K.4    Li, A.5    Mao, L.6
  • 64
    • 24944510549 scopus 로고    scopus 로고
    • MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development
    • 10.1105/tpc.105.030841, 1091761, 15829603
    • Guo HS, Xie Q, Fei JF, Chua NH. MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development. Plant Cell 2005, 17(5):1376-1386. 10.1105/tpc.105.030841, 1091761, 15829603.
    • (2005) Plant Cell , vol.17 , Issue.5 , pp. 1376-1386
    • Guo, H.S.1    Xie, Q.2    Fei, J.F.3    Chua, N.H.4
  • 65
    • 1642366133 scopus 로고    scopus 로고
    • A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
    • 10.1126/science.1088060, 12893888
    • Chen X. A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 2004, 303(5666):2022-2025. 10.1126/science.1088060, 12893888.
    • (2004) Science , vol.303 , Issue.5666 , pp. 2022-2025
    • Chen, X.1
  • 66
    • 78049334183 scopus 로고    scopus 로고
    • On reconciling the interactions between APETALA2, miR172 and AGAMOUS with the ABC model of flower development
    • 10.1242/dev.036673, 2964095, 20876650
    • Wollmann H, Mica E, Todesco M, Long JA, Weigel D. On reconciling the interactions between APETALA2, miR172 and AGAMOUS with the ABC model of flower development. Development 2010, 137(21):3633-3642. 10.1242/dev.036673, 2964095, 20876650.
    • (2010) Development , vol.137 , Issue.21 , pp. 3633-3642
    • Wollmann, H.1    Mica, E.2    Todesco, M.3    Long, J.A.4    Weigel, D.5
  • 67
    • 78650648484 scopus 로고    scopus 로고
    • Regulation of flowering time and floral patterning by miR172
    • 10.1093/jxb/erq295, 20952628
    • Zhu QH, Helliwell CA. Regulation of flowering time and floral patterning by miR172. J Exp Bot 2011, 62(2):487-495. 10.1093/jxb/erq295, 20952628.
    • (2011) J Exp Bot , vol.62 , Issue.2 , pp. 487-495
    • Zhu, Q.H.1    Helliwell, C.A.2
  • 68
    • 9644272448 scopus 로고    scopus 로고
    • Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
    • 10.1038/ng1478, 15565108
    • Allen E, Xie Z, Gustafson AM, Sung GH, Spatafora JW, Carrington JC. Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 2004, 36(12):1282-1290. 10.1038/ng1478, 15565108.
    • (2004) Nat Genet , vol.36 , Issue.12 , pp. 1282-1290
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Sung, G.H.4    Spatafora, J.W.5    Carrington, J.C.6
  • 69
    • 55049113363 scopus 로고    scopus 로고
    • Evolution of microRNAs and their targets: are all microRNAs biologically relevant?
    • Axtell MJ. Evolution of microRNAs and their targets: are all microRNAs biologically relevant?. Biochim Biophys Acta 2008, 1779(11):725-734.
    • (2008) Biochim Biophys Acta , vol.1779 , Issue.11 , pp. 725-734
    • Axtell, M.J.1
  • 70
    • 79954606171 scopus 로고    scopus 로고
    • Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
    • 10.1093/nar/gkq1047, 3074118, 21113019
    • Li T, Li H, Zhang YX, Liu JY. Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica). Nucleic Acids Res 2011, 39(7):2821-2833. 10.1093/nar/gkq1047, 3074118, 21113019.
    • (2011) Nucleic Acids Res , vol.39 , Issue.7 , pp. 2821-2833
    • Li, T.1    Li, H.2    Zhang, Y.X.3    Liu, J.Y.4
  • 72
    • 34247567995 scopus 로고    scopus 로고
    • Effect of exogenous calcium on post-thaw growth recovery and subsequent plant regeneration of cryopreserved embryogenic calli of Hevea brasiliensis (Mull. Arg.)
    • 10.1007/s00299-006-0278-3, 17186244
    • Lardet L, Martin F, Dessailly F, Carron MP, Montoro P. Effect of exogenous calcium on post-thaw growth recovery and subsequent plant regeneration of cryopreserved embryogenic calli of Hevea brasiliensis (Mull. Arg.). Plant Cell Rep 2007, 26(5):559-569. 10.1007/s00299-006-0278-3, 17186244.
    • (2007) Plant Cell Rep , vol.26 , Issue.5 , pp. 559-569
    • Lardet, L.1    Martin, F.2    Dessailly, F.3    Carron, M.P.4    Montoro, P.5
  • 73
    • 0033496273 scopus 로고    scopus 로고
    • Relation between biochemical characteristics and conversion ability in Hevea brasiliensis zygotic and somatic embryos
    • Lardet L, Piombo G, Oriol F, Dechamp E, Carron M. Relation between biochemical characteristics and conversion ability in Hevea brasiliensis zygotic and somatic embryos. Can J Bot 1999, 77:1168-1177.
    • (1999) Can J Bot , vol.77 , pp. 1168-1177
    • Lardet, L.1    Piombo, G.2    Oriol, F.3    Dechamp, E.4    Carron, M.5
  • 74
    • 77957109738 scopus 로고    scopus 로고
    • Isolation of three members of the multigene family encoding ACC oxidases in Hevea brasiliensis and investigation of their responses to ethylene stimulation and wounding
    • Kuswanhadi, Leclercq J, Rio M, Tregear J, Ducamp-Collin MN, Montoro P. Isolation of three members of the multigene family encoding ACC oxidases in Hevea brasiliensis and investigation of their responses to ethylene stimulation and wounding. Journal of rubber research 2010, 13(3):185-205.
    • (2010) Journal of rubber research , vol.13 , Issue.3 , pp. 185-205
    • Kuswanhadi1    Leclercq, J.2    Rio, M.3    Tregear, J.4    Ducamp-Collin, M.N.5    Montoro, P.6
  • 75
    • 77958085120 scopus 로고    scopus 로고
    • Gene expression pattern in response to wounding, methyl jasmonate and ethylene in the bark of Hevea brasiliensis
    • 10.1093/treephys/tpq066, 20660491
    • Duan C, Rio M, Leclercq J, Bonnot F, Oliver G, Montoro P. Gene expression pattern in response to wounding, methyl jasmonate and ethylene in the bark of Hevea brasiliensis. Tree Physiol 2010, 30(10):1349-1359. 10.1093/treephys/tpq066, 20660491.
    • (2010) Tree Physiol , vol.30 , Issue.10 , pp. 1349-1359
    • Duan, C.1    Rio, M.2    Leclercq, J.3    Bonnot, F.4    Oliver, G.5    Montoro, P.6
  • 77
    • 70350669278 scopus 로고    scopus 로고
    • Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    • 10.1105/tpc.109.068130, 2768930, 19767456
    • Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M. Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules. Plant Cell 2009, 21(9):2780-2796. 10.1105/tpc.109.068130, 2768930, 19767456.
    • (2009) Plant Cell , vol.21 , Issue.9 , pp. 2780-2796
    • Lelandais-Briere, C.1    Naya, L.2    Sallet, E.3    Calenge, F.4    Frugier, F.5    Hartmann, C.6    Gouzy, J.7    Crespi, M.8
  • 78
    • 79959967431 scopus 로고    scopus 로고
    • PsRNATarget: a plant small RNA target analysis server
    • 10.1093/nar/gkr829, 3125753, 21622958
    • Dai X, Zhao PX. psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res 2011, 39(2):W155-W159. 10.1093/nar/gkr829, 3125753, 21622958.
    • (2011) Nucleic Acids Res , vol.39 , Issue.2
    • Dai, X.1    Zhao, P.X.2
  • 79
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • 10.1093/bioinformatics/bti610, 16081474
    • Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21(18):3674-3676. 10.1093/bioinformatics/bti610, 16081474.
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6


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