Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species

PLoS Computational Biology

Volumn 10, Issue 2, 2014, Pages

  Pitkänen, Esa ^a   Jouhten, Paula ^b   Hou, Jian ^a,c   Syed, Muhammad Fahad ^b   Blomberg, Peter ^b   Kludas, Jana ^c   Oja, Merja ^b   Holm, Liisa ^d   Penttilä, Merja ^b   Rousu, Juho ^c   Arvas, Mikko ^b  

^a UNIVERSITY OF HELSINKI   (Finland)

^b VTT TECHNICAL RESEARCH CENTRE OF FINLAND   (Finland)

^c AALTO UNIVERSITY   (Finland)

^d UNIVERSITY OF HELSINKI   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

GENES; METABOLISM;

COMPUTATIONAL APPROACH; EXPONENTIAL GROWTH; FUNGAL SPECIES; GENOME-SCALE METABOLIC NETWORK; METABOLIC NETWORK; METABOLIC NETWORK MODELLING; METABOLIC RECONSTRUCTION; NUMBER OF SPECIES; PROBABILISTIC FRAMEWORK; SEQUENCE DATA;

YEAST;

CARBON;

ACCURACY; ARTICLE; BIOMASS PRODUCTION; COMPARATIVE METABOLIC RECONSTRUCTION FRAMEWORK; COMPUTER PROGRAM; DATA PROCESSING; FUNGAL GENOME; FUNGAL METABOLISM; GENE INACTIVATION; GENE SEQUENCE; METABOLIC FLUX ANALYSIS; MOLECULAR EVOLUTION; NONHUMAN; PARSIMONY ANALYSIS; PHYLOGENY; SACCHAROMYCES CEREVISIAE; SPECIES COMPARISON; ALGORITHM; BIOLOGICAL MODEL; BIOLOGY; BIOMASS; BIOTECHNOLOGY; CLASSIFICATION; COMPARATIVE STUDY; FUNGUS; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIOLOGY; SPECIES DIFFERENCE; STATISTICAL MODEL;

ALGORITHMS; BIOMASS; BIOTECHNOLOGY; COMPUTATIONAL BIOLOGY; EVOLUTION, MOLECULAR; FUNGI; GENE KNOCKOUT TECHNIQUES; GENOME, FUNGAL; INDUSTRIAL MICROBIOLOGY; METABOLIC NETWORKS AND PATHWAYS; MODELS, BIOLOGICAL; MODELS, GENETIC; MODELS, STATISTICAL; PHYLOGENY; SACCHAROMYCES CEREVISIAE; SPECIES SPECIFICITY;

EID: 84895735489     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1003465     Document Type: Article

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