Finding feasible pathways in metabolic networks

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 3746 LNCS, Issue , 2005, Pages 123-133

  Pitkänen, Esa ^a   Rantanen, Ari ^a   Rousu, Juho ^b   Ukkonen, Esko ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

^b UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; ESCHERICHIA COLI; GENES; MICROORGANISMS; REACTION KINETICS; ROBUSTNESS (CONTROL SYSTEMS);

BIOCHEMICAL PROCESSES; METABOLIC NETWORKS; MICROBIAL ORGANISMS;

METABOLITES;

EID: 33646527159     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/11573036_12     Document Type: Conference Paper

References (12)

1. M. Arita. The metabolic world of Escherichia coli is not small. PNAS, 101(6):1543-1547, 2004.
2. T. Bylander. The computational complexity of prepositional STRIPS planning. Artificial Intelligence, 69(1-2):165-204, 1994.
3. O. Ebenhöh, T. Handorf, and R. Heinrich. Structural analysis of expanding metabolic networks. Genome Informatics, 15(1):35-45, 2004.
4. J. Förster, I. Famili, P. Fu, B. Palsson, and J. Nielsen. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Research, (13):244-253, 2003.
5. H. Jeong, B. Tombor, R. Albert, Z. N. Oltvai, and A.-L. Barabási. The large-scale organization of metabolic networks. Nature, (407):651-654, 2000.
6. M. Kanehisa and S. Goto. Kegg: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res., 28:27-30, 2000.
7. J. Kleinberg. The small-world phenomenon: An algorithmic perspective. In Proc. 32nd A CM Symposium on Theory of Computing, 2000.
8. C. J. Krieger, P. Zhang, L. A. Mueller, A. Wang, S. Paley, M. Arnaud, J. Pick, S. Y. Rhee, and P. D. Karp. MetaCyc: a multiorganism database of metabolic pathways and enzymes. Nucleic Acids Research, 32(1):D438-42, 2004.
9. H.-W. Ma and A.-P. Zeng. Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. Bioinformatics, 19(2):270-277, 2003.
10. S. J. Russell and P. Norvig. Artifical Intelligence: A Modern Approach. Prentice Hall, 2nd edition, 2003.
11. C. H. Schilling, D. Letscher, and B. Palsson. Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. Journal of Theoretical Biology, (203):228-248, 2003.
12. S. Schuster, D. A. Fell, and T. Dandekar. A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic network. Nature Biotechnology, 18:326-332, March 2000.