Enhanced production of polyhydroxyalkanoates (PHAs) from beechwood xylan by recombinant Escherichia coli

Applied Microbiology and Biotechnology

Volumn 98, Issue 2, 2014, Pages 831-842

  Salamanca Cardona, Lucia ^a   Ashe, Christopher S ^a   Stipanovic, Arthur J ^a   Nomura, Christopher T ^a  

^a STATE UNIVERSITY OF NEW YORK   (United States)

Author keywords

Biomass; Hemicellulose; Polyhydroxyalkanoates; Recombinant Escherichia coli; Xylan; Xylanases

Indexed keywords

CALORIMETRY; CHROMATOGRAPHY, GEL; CULTURE MEDIA; ENDO-1,4-BETA XYLANASES; ESCHERICHIA COLI; FAGUS; MAGNETIC RESONANCE SPECTROSCOPY; METABOLIC ENGINEERING; POLYHYDROXYALKANOATES; XYLANS; XYLOSIDASES;

EID: 84895071315     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-013-5398-4     Document Type: Article

References (61)

1. Anderson AJ, Dawes EA (1990) Occurrence, metabolism, metabolic role, and industrial uses of bacterial polyhydroxyalkanoates. Microbiol Rev 54:450-472 (Pubitemid 120004382)
2. Bachmann SL, McCarthy AJ (1989) Purification and characterization of a thermostable β-xylosidase from Thermomonospora fusca. J Gen Microbiol 135:293-299
3. Bernier R Jr, Driguez H, Desrochers M (1983) Molecular cloning of a Bacillus subtilis xylanase gene in Escherichia coli. Gene 26:59-65 (Pubitemid 14209686)
4. Biely P, Kluepfel D, Morosoli R, Shareck F (1993) Mode of action of three endo-β-1,4-xylanases of Streptomyces lividans. BBA-Protein Struct Mol 1162:246-254 (Pubitemid 23094335)
5. Cantwell BA, McConnell DJ (1983) Molecular cloning and expression of a Bacillus subtilis β-glucanase gene in Escherichia coli. Gene 23:211-219 (Pubitemid 13078021)
6. Choi J, Lee S (2004) Secretory and extracellular production of recombinant proteins using Escherichia coli. Appl Microbiol Biotechnol 64:625-635 (Pubitemid 38822625)
7. Desai TA, Rao CV (2010) Regulation of arabinose and xylose metabolism in Escherichia coli. Appl Environ Microbiol 76:1524-1532
8. Fidler S, Dennis D (1992) Polyhydroxyalkanoate production in recombinant Escherichia coli. FEMS Microbiol Lett 103:231-235 (Pubitemid 23007476)
9. Fukui T, Yokomizo S, Kobayashi G (1999) Co-expression of polyhydroxyalkanoate synthase and (R)-enoyl-CoA hydratase genes of Aeromonas caviae establishes copolyester biosynthesis pathway in Escherichia coli. FEMS Microbiol Lett 170:69-75 (Pubitemid 29044075)
10. Görke B, Stülke J (2008) Carbon catabolite repression in bacteria: many ways to make the most out of nutrients. Nat Rev Microbiol 6:613-624 (Pubitemid 352006104)
11. Iranmahboob J, Nadim F, Monemi S (2002) Optimizing acid-hydrolysis: a critical step for production of ethanol from mixed wood chips. Biomass Bioenergy 22:401-404 (Pubitemid 34432091)
12. John M, Schmidt B, Schmidt J (1979) Purification and some properties of five endo-1, 4-β-d-xylanases and β-d-xylosidase produced by a strain of Aspergillus niger. Can J Biochem 57:125-134
13. Jordan DB, Wagschal K, Grigorescu AA, Braker JD (2013) Highly active β-xylosidases of glycoside hydrolase family 43 operating on natural and artificial substrates. Appl Microbiol Biotechnol 97:4415-4428
14. Keenan T, Nakas J, Tanenbaum S (2006) Polyhydroxyalkanoate copolymers from forest biomass. J Ind Microbiol Biotechnol 33:616-626 (Pubitemid 43880169)
15. Kiemle DJ, Stipanovic AJ, Mayo KE (2004) Proton NMR methods in the compositional characterization of polysaccharides. ACS Symp Ser 864:122-139
16. Klinke HB, Thomsen A, Ahring BK (2004) Inhibition of ethanol-producing yeast and bacteria by degradation products produced during pre-treatment of biomass. Appl Microbiol Biotechnol 66:10-26
17. Kovach ME, Elzer PH, Steven Hill D, Robertson GT, Farris MA, Roop RM II, Peterson KM (1995) Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene 166:175-176
18. Lam V, Daruwalla K, Henderson P, Jones-Mortimer M (1980) Proton-linked d-xylose transport in Escherichia coli. J Bacteriol 143:396-402 (Pubitemid 10019678)
19. Larsson S, Palmqvist E, Hahn-Hägerdal B, Tengborg C, Stenberg K, Zacchi G, Nilvebrant N (1999) The generation of fermentation inhibitors during dilute acid hydrolysis of softwood. Enzym Microb Technol 24:151-159 (Pubitemid 29056189)
20. Lu J, Tappel RC, Nomura CT (2009) Mini-review: biosynthesis of poly(hydroxyalkanoates). Polym Rev 49:226-248
21. Lundgren BR, Boddy CN (2007) Sialic acid and N-acyl sialic acid analog production by fermentation of metabolically and genetically engineered Escherichia coli. Org Biomol Chem 5:1903-1909 (Pubitemid 46884111)
22. Lynd LR, Zyl WHV, McBride JE, Laser M (2005) Consolidated bioprocessing of cellulosic biomass: an update. Curr Opin Biotechnol 16:577 (Pubitemid 41393839)
23. Magasanik B (1961) Catabolite repression. Cold Spring Harb Symp Quant Biol 26:249-256
24. Mergulhao FJM, Summers DK, Monteiro GA (2005) Recombinant protein secretion in Escherichia coli. Biotech Adv 23:177-202 (Pubitemid 40335946)
25. Mosier N, Wyman C, Dale B, Elander R, Lee Y, Holtzapple M, Ladisch M (2005) Features of promising technologies for pretreatment of lignocellulosic biomass. Bioresour Technol 96:673-686 (Pubitemid 39592889)
26. Nduko JM, Matsumoto K, Ooi T, Taguchi S (2012a) Effectiveness of xylose utilization for high yield production of lactate-enriched P (lactate- co-3-hydroxybutyrate) using a lactate-overproducing strain of Escherichia coli and an evolved lactate-polymerizing enzyme. Metab Eng 15:159-166
27. Nduko JM, Suzuki W, Matsumoto K, Kobayashi H, Ooi T, Fukuoka A, Taguchi S (2012b) Polyhydroxyalkanoates production from cellulose hydrolysate in Escherichia coli LS5218 with superior resistance to 5-hydroxymethylfurfural. J Biosci Bioeng 70-72
28. Nomura CT, Taguchi S (2007) PHA synthase engineering toward superbiocatalysts for custom-made biopolymers. Appl Microbiol Biotechnol 73:969-979 (Pubitemid 44974304)
29. Olson DG, McBride JE, Joe Shaw A, Lynd LR (2012) Recent progress in consolidated bioprocessing. Curr Opin Biotechnol 23:396-405
30. Page N, Kluepfel D, Shareck F, Morosoli R (1996) Effect of signal peptide alterations and replacement on export of xylanase A in Streptomyces lividans. Appl Environ Microbiol 62:109-114 (Pubitemid 26013377)
31. Palmqvist E, Hahn-Hägerdal B (2000a) Fermentation of lignocellulosic hydrolysates. I: inhibition and detoxification. Bioresour Technol 74:17-24 (Pubitemid 30190274)
32. Palmqvist E, Hahn-Hägerdal B (2000b) Fermentation of lignocellulosic hydrolysates. II: inhibitors and mechanisms of inhibition. Bioresour Technol 74:25-33 (Pubitemid 30190275)
33. Pan W, Perrotta J, Stipanovic A, Nomura C, Nakas J (2012) Production of polyhydroxyalkanoates by Burkholderia cepacia ATCC 17759 using a detoxified sugar maple hemicellulosic hydrolysate. J Ind Microbiol Biotechnol 39:459-469
34. Poutanen K, Puls J (1988) Characteristics of Trichoderma reesei β-xylosidase and its use in the hydrolysis of solubilized xylans. Appl Microbiol Biotechnol 28:425-432
35. Poutanen K, Tenkanen M, Korte H, Puls J (1991) Accessory enzymes involved in the hydrolysis of xylans. Enzym Biomass Convers 33:426-436
36. Reddy CSK, Ghai R, Reddy CSK, Ghai R, Rashmi T, Kalia VC (2003) Polyhydroxyalkanoates: an overview. Bioresour Technol 87:137-146 (Pubitemid 35452650)
37. Sambrook J, Russell DW, Russell DW (2001). Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
38. Scheller HV, Ulvskov P (2010) Hemicelluloses. Annu Rev Plant Biol 61:263-289
39. Schleif R (2000) Regulation of the l-arabinose operon of Escherichia coli. Trends Genet 16:559-565
40. Schuster BG, Chinn MS (2012) Consolidated bioprocessing of lignocellulosic feedstocks for ethanol fuel production. Bioenergy Res 1-20
41. Shin H, McClendon S, Vo T, Chen R (2010) Escherichia coli binary culture engineered for direct fermentation of hemicellulose to a biofuel. Appl Environ Microbiol 76:8150-8159
42. Sjostrom E (1993) Wood chemistry - fundamentals and applications. Academic, San Diego
43. Spratt SK, Ginsburgh CL, Nunn WD (1981) Isolation and genetic characterization of Escherichia coli mutants defective in propionate metabolism. J Bacteriol 146:1166-1169 (Pubitemid 11033610)
44. Steen EJ, Kang Y, Bokinsky G, Hu Z, Schirmer A, McClure A, Del Cardayre SB, Keasling JD (2010) Microbial production of fatty-acid-derived fuels and chemicals from plant biomass. Nature 463:559-562
45. Subramaniyan S, Prema P (2002) Biotechnology of microbial xylanases: enzymology, molecular biology, and application. Crit Rev Biotechnol 22:33-64 (Pubitemid 34272292)
46. Sudesh K, Abe H, Doi Y (2000) Synthesis, structure and properties of polyhydroxyalkanoates: biological polyesters. Prog Polym Sci 25:1503-1555 (Pubitemid 32029920)
47. Sung WL, Luk CK, Zahab DM, Wakarchuk W (1993) Overexpression of the Bacillus subtilis and circulans xylanases in Escherichia coli. Protein Expr Purif 4:200-206
48. Taguchi K, Aoyagi Y, Matsusaki H, Fukui T, Doi Y (1999) Over-expression of 3-ketoacyl-ACP synthase III or malonyl-CoA-ACP transacylase gene induces monomer supply for polyhydroxybutyrate production in Escherichia coli HB101. Biotechnol Lett 21:579-584 (Pubitemid 29385112)
49. Taguchi S, Yamada M, Matsumoto K, Tajima K, Satoh Y, Munekata M, Ohno K, Kohda K, Shimamura T, Kambe H (2008) A microbial factory for lactate-based polyesters using a lactate-polymerizing enzyme. Proc Natl Acad Sci 105:17323-17327
50. Takase K, Taguchi S, Doi Y (2003) Enhanced synthesis of poly(3-hydroxybutyrate) in recombinant Escherichia coli by means of error-prone PCR mutagenesis, saturation mutagenesis and in vitro recombination of the type II polyhydroxyalkanoate synthase gene. J Biochem 133:139-145 (Pubitemid 36240989)
51. Tappel RC, Wang Q, Nomura CT (2012) Precise control of repeating unit composition in biodegradable poly (3-hydroxyalkanoate) polymers synthesized by Escherichia coli. J Biosci Bioeng 113:480-486
52. Teather RM, Wood PJ (1982) Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Appl Environ Microbiol 43:777-780 (Pubitemid 12105973)
53. Teleman A, Tenkanen M, Jacobs A, Dahlman O (2002) Characterization of O-acetyl-(4-O-methylglucurono) xylan isolated from birch and beech. Carbohydr Res 337:373-377 (Pubitemid 34155428)
54. Tsuge T, Taguchi K, Doi Y (2003) Molecular characterization and properties of (R)-specific enoyl-CoA hydratases from Pseudomonas aeruginosa: metabolic tools for synthesis of polyhydroxyalkanoates via fatty acid β-oxidation. Int J Biol Macromol 31:195-205 (Pubitemid 36144039)
55. van Zyl WH, den Haan R, la Grange DC (2011) Developing organisms for consolidated bioprocessing of biomass to ethanol. Biofuel Prod Recent Dev Prospects InTech 137-162
56. Wang Y, Zhang H, He Y, Luo H, Yao B (2007) Characterization, gene cloning, and expression of a novel xylanase XYNB from Streptomyces olivaceoviridis A1. Aquaculture 267:328-334 (Pubitemid 46899141)
57. Wang Q, Tappel RC, Zhu C, Nomura CT (2012) Development of a new strategy for production of medium-chain-length polyhydroxyalkanoates by recombinant Escherichia coli via inexpensive non-fatty acid feedstocks. Appl Environ Microbiol 78:519-527
58. Xiao Z, Storms R, Tsang A (2005) Microplate-based carboxymethylcellulose assay for endoglucanase activity. Anal Biochem 342:176-178 (Pubitemid 40805645)
59. Xu Q, Singh A, Himmel ME (2009) Perspectives and new directions for the production of bioethanol using consolidated bioprocessing of lignocellulose. Curr Opin Biotechnol 20:364-371
60. Yamada M, Matsumoto K, Uramoto S, Motohashi R, Abe H, Taguchi S (2011) Lactate fraction dependent mechanical properties of semitransparent poly (lactate-co-3-hydroxybutyrate) s produced by control of lactyl-CoA monomer fluxes in recombinant Escherichia coli. J Biotechnol 154:255-260
61. Zheng Z, Chen T, Zhao M, Wang Z, Zhao X (2012) Engineering Escherichia coli for succinate production from hemicellulose via consolidated bioprocessing. Microb Cell Fact 11:37