-
1
-
-
0032546844
-
The HIV-1 envelope glycoproteins: Fusogens, antigens, and immunogens
-
Wyatt R, Sodroski J (1998) The HIV-1 envelope glycoproteins: Fusogens, antigens, and immunogens. Science 280(5371):1884-1888.
-
(1998)
Science
, vol.280
, Issue.5371
, pp. 1884-1888
-
-
Wyatt, R.1
Sodroski, J.2
-
2
-
-
33847101745
-
Structural definition of a conserved neutralization epitope on HIV-1 gp120
-
Zhou T, et al. (2007) Structural definition of a conserved neutralization epitope on HIV-1 gp120. Nature 445(7129):732-737.
-
(2007)
Nature
, vol.445
, Issue.7129
, pp. 732-737
-
-
Zhou, T.1
-
3
-
-
77954920017
-
Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1
-
Wu X, et al. (2010) Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1. Science 329(5993):856-861.
-
(2010)
Science
, vol.329
, Issue.5993
, pp. 856-861
-
-
Wu, X.1
-
4
-
-
77954943648
-
Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01
-
Zhou T, et al. (2010) Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01. Science 329(5993):811-817.
-
(2010)
Science
, vol.329
, Issue.5993
, pp. 811-817
-
-
Zhou, T.1
-
5
-
-
80052925616
-
Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding
-
Scheid JF, et al. (2011) Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding. Science 333(6049):1633-1637.
-
(2011)
Science
, vol.333
, Issue.6049
, pp. 1633-1637
-
-
Scheid, J.F.1
-
6
-
-
84876797103
-
NISC Comparative Sequencing Program (2013) Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus
-
Liao HX, et al.; NISC Comparative Sequencing Program (2013) Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus. Nature 496(7446):469-476.
-
Nature
, vol.496
, Issue.7446
, pp. 469-476
-
-
Liao, H.X.1
-
7
-
-
77649318846
-
Analysis of memory B cell responses and isolation of novel monoclonal antibodies with neutralizing breadth from HIV-1-infected individuals
-
Corti D, et al. (2010) Analysis of memory B cell responses and isolation of novel monoclonal antibodies with neutralizing breadth from HIV-1-infected individuals. PLoS ONE 5(1):e8805.
-
(2010)
PLoS ONE
, vol.5
, Issue.1
-
-
Corti, D.1
-
8
-
-
82755184131
-
Increasing the potency and breadth of an HIV antibody by using structure-based rational design
-
Diskin R, et al. (2011) Increasing the potency and breadth of an HIV antibody by using structure-based rational design. Science 334(6060):1289-1293.
-
(2011)
Science
, vol.334
, Issue.6060
, pp. 1289-1293
-
-
Diskin, R.1
-
9
-
-
33846172297
-
Rational modifications of HIV-1 envelope glycoproteins for immunogen design
-
Phogat S, Wyatt R (2007) Rational modifications of HIV-1 envelope glycoproteins for immunogen design. Curr Pharm Des 13(2):213-227.
-
(2007)
Curr Pharm Des
, vol.13
, Issue.2
, pp. 213-227
-
-
Phogat, S.1
Wyatt, R.2
-
10
-
-
84876051105
-
Structural basis for HIV-1 gp120 recognition by a germ-line version of a broadly neutralizing antibody
-
Scharf L, et al. (2013) Structural basis for HIV-1 gp120 recognition by a germ-line version of a broadly neutralizing antibody. Proc Natl Acad Sci USA 110(15):6049-6054.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.15
, pp. 6049-6054
-
-
Scharf, L.1
-
11
-
-
84863915210
-
High-resolution definition of vaccine-elicited B cell responses against the HIV primary receptor binding site
-
Sundling C, et al. (2012) High-resolution definition of vaccine-elicited B cell responses against the HIV primary receptor binding site. Sci Transl Med 4(142):42ra96.
-
(2012)
Sci Transl Med
, vol.4
, Issue.142
-
-
Sundling, C.1
-
12
-
-
75449099267
-
Influence of novel CD4 binding-defective HIV-1 envelope glycoprotein immunogens on neutralizing antibody and T-cell responses in nonhuman primates
-
Douagi I, et al. (2010) Influence of novel CD4 binding-defective HIV-1 envelope glycoprotein immunogens on neutralizing antibody and T-cell responses in nonhuman primates. J Virol 84(4):1683-1695.
-
(2010)
J Virol
, vol.84
, Issue.4
, pp. 1683-1695
-
-
Douagi, I.1
-
13
-
-
84857306337
-
Biochemically defined HIV-1 envelope glycoprotein variant immunogens display differential binding and neutralizing specificities to the CD4-binding site
-
Feng Y, et al. (2012) Biochemically defined HIV-1 envelope glycoprotein variant immunogens display differential binding and neutralizing specificities to the CD4-binding site. J Biol Chem 287(8):5673-5686.
-
(2012)
J Biol Chem
, vol.287
, Issue.8
, pp. 5673-5686
-
-
Feng, Y.1
-
14
-
-
77956261658
-
Soluble HIV-1 Env trimers in adjuvant elicit potent and diverse functional B cell responses in primates
-
Sundling C, et al. (2010) Soluble HIV-1 Env trimers in adjuvant elicit potent and diverse functional B cell responses in primates. J Exp Med 207(9):2003-2017.
-
(2010)
J Exp Med
, vol.207
, Issue.9
, pp. 2017
-
-
Sundling, C.1
-
15
-
-
0027458347
-
Neutralization of HIV-1 by F105, a human monoclonal antibody to the CD4 binding site of gp120
-
Posner MR, Cavacini LA, Emes CL, Power J, Byrn R (1993) Neutralization of HIV-1 by F105, a human monoclonal antibody to the CD4 binding site of gp120. J Acquir Immune Defic Syndr 6(1):7-14.
-
(1993)
J Acquir Immune Defic Syndr
, vol.6
, Issue.1
, pp. 7-14
-
-
Posner, M.R.1
Cavacini, L.A.2
Emes, C.L.3
Power, J.4
Byrn, R.5
-
16
-
-
0345832301
-
ClusPro: An automated docking and discrimination method for the prediction of protein complexes
-
Comeau SR, Gatchell DW, Vajda S, Camacho CJ (2004) ClusPro: An automated docking and discrimination method for the prediction of protein complexes. Bioinformatics 20(1):45-50.
-
(2004)
Bioinformatics
, vol.20
, Issue.1
, pp. 45-50
-
-
Comeau, S.R.1
Gatchell, D.W.2
Vajda, S.3
Camacho, C.J.4
-
17
-
-
51349162563
-
Molecular architecture of native HIV-1 gp120 trimers
-
Liu J, Bartesaghi A, Borgnia MJ, Sapiro G, Subramaniam S (2008) Molecular architecture of native HIV-1 gp120 trimers. Nature 455(7209):109-113.
-
(2008)
Nature
, vol.455
, Issue.7209
, pp. 109-113
-
-
Liu, J.1
Bartesaghi, A.2
Borgnia, M.J.3
Sapiro, G.4
Subramaniam, S.5
-
18
-
-
84864603281
-
Structural mechanism of trimeric HIV-1 envelope glycoprotein activation
-
Tran EE, et al. (2012) Structural mechanism of trimeric HIV-1 envelope glycoprotein activation. PLoS Pathog 8(7):e1002797.
-
(2012)
PLoS Pathog
, vol.8
, Issue.7
-
-
Tran, E.E.1
-
19
-
-
23244434512
-
Human immunodeficiency virus type 1 env clones from acute and early subtype B infections for standardized assessments of vaccine-elicited neutralizing antibodies
-
Li M, et al. (2005) Human immunodeficiency virus type 1 env clones from acute and early subtype B infections for standardized assessments of vaccine-elicited neutralizing antibodies. J Virol 79(16):10108-10125.
-
(2005)
J Virol
, vol.79
, Issue.16
, pp. 10108-10125
-
-
Li, M.1
-
20
-
-
84863932778
-
Magnitude and breadth of the neutralizing antibody response in the RV144 and Vax003 HIV-1 vaccine efficacy trials
-
Montefiori DC, et al. (2012) Magnitude and breadth of the neutralizing antibody response in the RV144 and Vax003 HIV-1 vaccine efficacy trials. J Infect Dis 206(3): 431-441.
-
(2012)
J Infect Dis
, vol.206
, Issue.3
, pp. 431-441
-
-
Montefiori, D.C.1
-
21
-
-
77958041963
-
The JCSG high-throughput structural biology pipeline
-
Elsliger MA, et al. (2010) The JCSG high-throughput structural biology pipeline. Acta Crystallogr Sect F Struct Biol Cryst Commun 66(Pt 10):1137-1142.
-
(2010)
Acta Crystallogr Sect F Struct Biol Cryst Commun
, vol.66
, Issue.PART 10
, pp. 1137-1142
-
-
Elsliger, M.A.1
-
22
-
-
70450182950
-
Structural basis of immune evasion at the site of CD4 attachment on HIV-1 gp120
-
Chen L, et al. (2009) Structural basis of immune evasion at the site of CD4 attachment on HIV-1 gp120. Science 326(5956):1123-1127.
-
(2009)
Science
, vol.326
, Issue.5956
, pp. 1123-1127
-
-
Chen, L.1
-
23
-
-
80052942203
-
Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing
-
NISC Comparative Sequencing Program
-
Wu X, et al.; NISC Comparative Sequencing Program (2011) Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing. Science 333(6049):1593-1602.
-
(2011)
Science
, vol.333
, Issue.6049
, pp. 1593-1602
-
-
Wu, X.1
-
24
-
-
67249085575
-
Structure-based stabilization of HIV-1 gp120 enhances humoral immune responses to the induced co-receptor binding site
-
Dey B, et al. (2009) Structure-based stabilization of HIV-1 gp120 enhances humoral immune responses to the induced co-receptor binding site. PLoS Pathog 5(5): E1000445.
-
(2009)
PLoS Pathog
, vol.5
, Issue.5
-
-
Dey, B.1
-
25
-
-
0032543307
-
Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody
-
Kwong PD, et al. (1998) Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody. Nature 393(6686): 648-659.
-
(1998)
Nature
, vol.393
, Issue.6686
, pp. 648-659
-
-
Kwong, P.D.1
-
26
-
-
26444450696
-
Dissection of the carbohydrate specificity of the broadly neutralizing anti-HIV-1 antibody 2G12
-
Calarese DA, et al. (2005) Dissection of the carbohydrate specificity of the broadly neutralizing anti-HIV-1 antibody 2G12. Proc Natl Acad Sci USA 102(38):13372-13377.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.38
, pp. 13372-13377
-
-
Calarese, D.A.1
-
27
-
-
12444291017
-
Antibody domain exchange is an immunological solution to carbohydrate cluster recognition
-
Calarese DA, et al. (2003) Antibody domain exchange is an immunological solution to carbohydrate cluster recognition. Science 300(5628):2065-2071.
-
(2003)
Science
, vol.300
, Issue.5628
, pp. 2065-2071
-
-
Calarese, D.A.1
-
28
-
-
80053132436
-
Broad neutralization coverage of HIV by multiple highly potent antibodies
-
Protocol G Principal Investigators
-
Walker LM, et al.; Protocol G Principal Investigators (2011) Broad neutralization coverage of HIV by multiple highly potent antibodies. Nature 477(7365):466-470.
-
(2011)
Nature
, vol.477
, Issue.7365
, pp. 466-470
-
-
Walker, L.M.1
-
29
-
-
84878519611
-
Broadly neutralizing antibody PGT121 allosterically modulates CD4 binding via recognition of the HIV-1 gp120 V3 base and multiple surrounding glycans
-
Julien JP, et al. (2013) Broadly neutralizing antibody PGT121 allosterically modulates CD4 binding via recognition of the HIV-1 gp120 V3 base and multiple surrounding glycans. PLoS Pathog 9(5):e1003342.
-
(2013)
PLoS Pathog
, vol.9
, Issue.5
-
-
Julien, J.P.1
-
30
-
-
84883275866
-
Structural characterization of cleaved, soluble HIV-1 envelope glycoprotein trimers
-
Khayat R, et al. (2013) Structural characterization of cleaved, soluble HIV-1 envelope glycoprotein trimers. J Virol 87(17):9865-9872.
-
(2013)
J Virol
, vol.87
, Issue.17
, pp. 9865-9872
-
-
Khayat, R.1
-
31
-
-
84875034460
-
Asymmetric recognition of the HIV-1 trimer by broadly neutralizing antibody PG9
-
Julien JP, et al. (2013) Asymmetric recognition of the HIV-1 trimer by broadly neutralizing antibody PG9. Proc Natl Acad Sci USA 110(11):4351-4356.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.11
, pp. 4351-4356
-
-
Julien, J.P.1
-
32
-
-
84864363185
-
Structural basis for germline gene usage of a potent class of antibodies targeting the CD4-binding site of HIV-1 gp120
-
West AP, Jr., Diskin R, Nussenzweig MC, Bjorkman PJ (2012) Structural basis for germline gene usage of a potent class of antibodies targeting the CD4-binding site of HIV-1 gp120. Proc Natl Acad Sci USA 109(30):E2083-E2090.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.30
-
-
West Jr., A.P.1
Diskin, R.2
Nussenzweig, M.C.3
Bjorkman, P.J.4
-
33
-
-
84875759341
-
Somatic mutations of the immunoglobulin framework are generally required for broad and potent HIV-1 neutralization
-
Klein F, et al. (2013) Somatic mutations of the immunoglobulin framework are generally required for broad and potent HIV-1 neutralization. Cell 153(1):126-138.
-
(2013)
Cell
, vol.153
, Issue.1
, pp. 126-138
-
-
Klein, F.1
-
34
-
-
0031969423
-
Neutralization of human immunodeficiency virus type 1 by antibody to gp120 is determined primarily by occupancy of sites on the virion irrespective of epitope specificity
-
Parren PW, et al. (1998) Neutralization of human immunodeficiency virus type 1 by antibody to gp120 is determined primarily by occupancy of sites on the virion irrespective of epitope specificity. J Virol 72(5):3512-3519.
-
(1998)
J Virol
, vol.72
, Issue.5
, pp. 3512-3519
-
-
Parren, P.W.1
-
35
-
-
0037069682
-
HIV-1 evades antibody-mediated neutralization through conformational masking of receptor-binding sites
-
Kwong PD, et al. (2002) HIV-1 evades antibody-mediated neutralization through conformational masking of receptor-binding sites. Nature 420(6916):678-682.
-
(2002)
Nature
, vol.420
, Issue.6916
, pp. 678-682
-
-
Kwong, P.D.1
-
36
-
-
70350320690
-
Mechanism of human immunodeficiency virus type 1 resistance to monoclonal antibody B12 that effectively targets the site of CD4 attachment
-
Wu X, et al. (2009) Mechanism of human immunodeficiency virus type 1 resistance to monoclonal antibody B12 that effectively targets the site of CD4 attachment. J Virol 83(21):10892-10907.
-
(2009)
J Virol
, vol.83
, Issue.21
, pp. 10892-10907
-
-
Wu, X.1
-
37
-
-
84867630116
-
A blueprint for HIV vaccine discovery
-
Burton DR, et al. (2012) A Blueprint for HIV Vaccine Discovery. Cell Host Microbe 12(4):396-407.
-
(2012)
Cell Host Microbe
, vol.12
, Issue.4
, pp. 396-407
-
-
Burton, D.R.1
-
38
-
-
84879302728
-
HIV-1 neutralizing antibodies: Understanding nature's pathways
-
Mascola JR, Haynes BF (2013) HIV-1 neutralizing antibodies: Understanding nature's pathways. Immunol Rev 254(1):225-244.
-
(2013)
Immunol Rev
, vol.254
, Issue.1
, pp. 225-244
-
-
Mascola, J.R.1
Haynes, B.F.2
-
39
-
-
38349081511
-
The challenges of eliciting neutralizing antibodies to HIV-1 and to influenza virus
-
Karlsson Hedestam GB, et al. (2008) The challenges of eliciting neutralizing antibodies to HIV-1 and to influenza virus. Nat Rev Microbiol 6(2):143-155.
-
(2008)
Nat Rev Microbiol
, vol.6
, Issue.2
, pp. 143-155
-
-
Karlsson Hedestam, G.B.1
-
40
-
-
23844492576
-
Auto-rickshaw: An automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment
-
Panjikar S, Parthasarathy V, Lamzin VS, Weiss MS, Tucker PA (2005) Auto-rickshaw: An automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment. Acta Crystallogr D Biol Crystallogr 61(Pt 4): 449-457.
-
(2005)
Acta Crystallogr D Biol Crystallogr
, vol.61
, Issue.PART 4
, pp. 449-457
-
-
Panjikar, S.1
Parthasarathy, V.2
Lamzin, V.S.3
Weiss, M.S.4
Tucker, P.A.5
-
41
-
-
14244272868
-
PHENIX: Building new software for automated crystallographic structure determination
-
Adams PD, et al. (2002) PHENIX: Building new software for automated crystallographic structure determination. Acta Crystallogr D Biol Crystallogr 58(Pt 11): 1948-1954.
-
(2002)
Acta Crystallogr D Biol Crystallogr
, vol.58
, Issue.PART 11
, pp. 1948-1954
-
-
Adams, P.D.1
-
42
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley P, Cowtan K (2004) Coot: Model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60(Pt 12 Pt 1):2126-2132.
-
(2004)
Acta Crystallogr D Biol Crystallogr
, vol.60
, Issue.PART 12 PART 1
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
43
-
-
20544468931
-
Automated molecular microscopy: The new Leginon system
-
Suloway C, et al. (2005) Automated molecular microscopy: The new Leginon system. J Struct Biol 151(1):41-60.
-
(2005)
J Struct Biol
, vol.151
, Issue.1
, pp. 41-60
-
-
Suloway, C.1
-
44
-
-
63649113687
-
DoG Picker and TiltPicker: Software tools to facilitate particle selection in single particle electron microscopy
-
Voss NR, Yoshioka CK, Radermacher M, Potter CS, Carragher B (2009) DoG Picker and TiltPicker: Software tools to facilitate particle selection in single particle electron microscopy. J Struct Biol 166(2):205-213.
-
(2009)
J Struct Biol
, vol.166
, Issue.2
, pp. 205-213
-
-
Voss, N.R.1
Yoshioka, C.K.2
Radermacher, M.3
Potter, C.S.4
Carragher, B.5
-
45
-
-
60649103238
-
Appion: An integrated, database-driven pipeline to facilitate EM image processing
-
Lander GC, et al. (2009) Appion: An integrated, database-driven pipeline to facilitate EM image processing. J Struct Biol 166(1):95-102.
-
(2009)
J Struct Biol
, vol.166
, Issue.1
, pp. 95-102
-
-
Lander, G.C.1
-
46
-
-
77953710827
-
A clustering approach to multireference alignment of singleparticle projections in electron microscopy
-
Sorzano CO, et al. (2010) A clustering approach to multireference alignment of singleparticle projections in electron microscopy. J Struct Biol 171(2):197-206.
-
(2010)
J Struct Biol
, vol.171
, Issue.2
, pp. 197-206
-
-
Sorzano, C.O.1
-
47
-
-
33845332754
-
EMAN2: An extensible image processing suite for electron microscopy
-
Tang G, et al. (2007) EMAN2: An extensible image processing suite for electron microscopy. J Struct Biol 157(1):38-46.
-
(2007)
J Struct Biol
, vol.157
, Issue.1
, pp. 38-46
-
-
Tang, G.1
-
48
-
-
0033377664
-
EMAN: Semiautomated software for high-resolution single-particle reconstructions
-
Ludtke SJ, Baldwin PR, Chiu W (1999) EMAN: Semiautomated software for high-resolution single-particle reconstructions. J Struct Biol 128(1):82-97.
-
(1999)
J Struct Biol
, vol.128
, Issue.1
, pp. 82-97
-
-
Ludtke, S.J.1
Baldwin, P.R.2
Chiu, W.3
-
49
-
-
0036280741
-
Molecular dynamics applied to X-ray structure refinement
-
Brunger AT, Adams PD (2002) Molecular dynamics applied to X-ray structure refinement. Accounts of Chemical Research 35(6):404-412.
-
(2002)
Accounts of Chemical Research
, vol.35
, Issue.6
, pp. 404-412
-
-
Brunger, A.T.1
Adams, P.D.2
-
50
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen VB, et al. (2010) MolProbity: All-atom structure validation for macromolecular crystallography. Acta Crystallogr D Biol Crystallogr 66(Pt 1):12-21.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, Issue.PART 1
, pp. 12-21
-
-
Chen, V.B.1
|