메뉴 건너뛰기




Volumn 30, Issue 8, 2013, Pages 1853-1866

Subfunctionalization via adaptive evolution influenced by genomic context: The case of histone chaperones ASF1a and ASF1b

Author keywords

ASF1; Chromatin dynamics; Evolution; Histone chaperones; Structure

Indexed keywords

CHAPERONE; HISTONE H3; HISTONE H4; PROTEIN ASF1A; PROTEIN ASF1B; UNCLASSIFIED DRUG; PROTEIN BINDING;

EID: 84894321432     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mst086     Document Type: Article
Times cited : (57)

References (73)
  • 1
    • 77954272855 scopus 로고    scopus 로고
    • TranslatorX: Multiple alignment of nucleotide sequences guided by amino acid translations
    • Abascal F, Zardoya R, Telford MJ. 2010. TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. Nucleic Acids Res. 38:W7-W13.
    • (2010) Nucleic Acids Res. , vol.38
    • Abascal, F.1    Zardoya, R.2    Telford, M.J.3
  • 2
    • 84861694712 scopus 로고    scopus 로고
    • Differential GC content between exons and introns establishes distinct strategies of splice-site recognition
    • (12 co-authors)
    • Amit M, Donyo M, Hollander D, et al. (12 co-authors). 2012. Differential GC content between exons and introns establishes distinct strategies of splice-site recognition. Cell Rep. 1543-556.
    • (2012) Cell Rep. , pp. 1543-1556
    • Amit, M.1    Donyo, M.2    Hollander, D.3
  • 3
    • 84859894479 scopus 로고    scopus 로고
    • Codanin-1, mutated in the anaemic disease CDAI, regulates Asf1 function in S-phase histone supply
    • Ask K, Jasencakova Z, Menard P, Feng Y, Almouzni G, Groth A 2012. Codanin-1, mutated in the anaemic disease CDAI, regulates Asf1 function in S-phase histone supply. EMBOJ. 31:2013-2023
    • (2012) EMBOJ , vol.31 , pp. 2013-2023
    • Ask, K.1    Jasencakova, Z.2    Menard, P.3    Feng, Y.4    Almouzni, G.5    Groth, A.6
  • 4
    • 80054976678 scopus 로고    scopus 로고
    • The evolution of gene expression levels in mammalian organs
    • (18 co-authors)
    • Brawand D, Soumillon M, Necsulea A, et al. (18 co-authors). 2011. The evolution of gene expression levels in mammalian organs. Nature 478:343-348.
    • (2011) Nature , vol.478 , pp. 343-348
    • Brawand, D.1    Soumillon, M.2    Necsulea, A.3
  • 5
    • 67650757433 scopus 로고    scopus 로고
    • TrimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses
    • Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T. 2009. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25:1972-1973
    • (2009) Bioinformatics , vol.25 , pp. 1972-1973
    • Capella-Gutiérrez, S.1    Silla-Martínez, J.M.2    Gabaldón, T.3
  • 6
    • 56549119570 scopus 로고    scopus 로고
    • Turning a hobby into a job: How duplicated genes find new functions
    • Conant GC, Wolfe KH. 2008. Turning a hobby into a job: how duplicated genes find new functions. Nat Rev Genet. 9:938-950.
    • (2008) Nat Rev Genet. , vol.9 , pp. 938-950
    • Conant, G.C.1    Wolfe, K.H.2
  • 7
    • 79551612332 scopus 로고    scopus 로고
    • Asf1b, the necessary Asf1 isoform for proliferation, is predictive of outcome in breast cancer
    • (12 co-authors)
    • Corpet A De Koning L, Toedling J, et al. (12 co-authors). 2011. Asf1b, the necessary Asf1 isoform for proliferation, is predictive of outcome in breast cancer. EMBO J. 30:480-493.
    • (2011) EMBO J. , vol.30 , pp. 480-493
    • Corpet, A.1    De Koning, L.2    Toedling, J.3
  • 9
    • 26444603772 scopus 로고    scopus 로고
    • Two rounds of whole genome duplication in the ancestral vertebrate
    • Dehal P, Boore JL 2005. Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol. 3:e314-e314
    • (2005) PLoS Biol. , vol.3
    • Dehal, P.1    Boore, J.L.2
  • 11
    • 78650751202 scopus 로고    scopus 로고
    • Evolution of an antifreeze protein by neofunctionalization under escape from adaptive conflict
    • Deng C, Cheng CH, Ye H, He X, Chen L 2010. Evolution of an antifreeze protein by neofunctionalization under escape from adaptive conflict. Proc Natl Acad Sci USA 107:21593-21598
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 21593-21598
    • Deng, C.1    Cheng, C.H.2    Ye, H.3    He, X.4    Chen, L.5
  • 12
    • 84873054485 scopus 로고    scopus 로고
    • The C terminus of the histone chaperone Asf1 cross-links to histone H3 in yeast and promotes interaction with histones H3 and H4
    • Dennehey BK, Noone S, Liu WH, Smith L, Churchill ME, Tyler JK. 2013 The C terminus of the histone chaperone Asf1 cross-links to histone H3 in yeast and promotes interaction with histones H3 and H4. Mol Cell Biol. 33:605-621.
    • (2013) Mol Cell Biol. , vol.33 , pp. 605-621
    • Dennehey, B.K.1    Noone, S.2    Liu, W.H.3    Smith, L.4    Churchill, M.E.5    Tyler, J.K.6
  • 13
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 15
    • 67749108209 scopus 로고    scopus 로고
    • INDELible: A flexible simulator of biological sequence evolution
    • Fletcher W, Yang Z. 2009. INDELible: a flexible simulator of biological sequence evolution. Mol Biol Evol. 26:1879-1888.
    • (2009) Mol Biol EVol. , vol.26 , pp. 1879-1888
    • Fletcher, W.1    Yang, Z.2
  • 17
    • 0031020582 scopus 로고    scopus 로고
    • Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria
    • Foster PG, Jermiin LS, Hickey DA. 1997. Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria. J Mol Evol. 44:282-288.
    • (1997) J Mol EVol. , vol.44 , pp. 282-288
    • Foster, P.G.1    Jermiin, L.S.2    Hickey, D.A.3
  • 18
    • 84879338433 scopus 로고    scopus 로고
    • The branch-site test of positive selection is surprisingly robust but lacks power under synonymous substitution saturation and variation in GC
    • published April 4, 2013 doi: 10.1093/molbev/mst062
    • Gharib WH, Robinson-Rechavi M. 2013. The branch-site test of positive selection is surprisingly robust but lacks power under synonymous substitution saturation and variation in GC. Mol Biol Evol. Advance Access published April 4, 2013, doi: 10.1093/molbev/mst062
    • (2013) Mol Biol Evol. Advance Access
    • Gharib, W.H.1    Robinson-Rechavi, M.2
  • 20
    • 7344256125 scopus 로고    scopus 로고
    • Directional mutational pressure affects the amino acid composition and hydrophobicity of proteins in bacteria
    • Gu X, Hewett-Emmett D, Li WH. 1998. Directional mutational pressure affects the amino acid composition and hydrophobicity of proteins in bacteria. Genetica 102-103:383-391.
    • (1998) Genetica , vol.102-103 , pp. 383-391
    • Gu, X.1    Hewett-Emmett, D.2    Li, W.H.3
  • 21
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 59:307-321.
    • (2010) Syst Biol. , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 22
    • 80055085862 scopus 로고    scopus 로고
    • Minichromosome maintenance helicase paralog MCM9 is dispensible for DNA replication but functions in germ-line stem cells and tumor suppression
    • Hartford SA, Luo Y, Southard TL, Min IM, Lis JT, Schimenti JC. 2011. Minichromosome maintenance helicase paralog MCM9 is dispensible for DNA replication but functions in germ-line stem cells and tumor suppression. Proc Natl Acad Sci U S A. 108:17702-17707.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 17702-17707
    • Hartford, S.A.1    Luo, Y.2    Southard, T.L.3    Min, I.M.4    Lis, J.T.5    Schimenti, J.C.6
  • 23
    • 20144374141 scopus 로고    scopus 로고
    • Gene complexity and gene duplicability
    • He X, Zhang J. 2005. Gene complexity and gene duplicability. Curr Biol. 15:1016-1021.
    • (2005) Curr Biol. , vol.15 , pp. 1016-1021
    • He, X.1    Zhang, J.2
  • 24
    • 56849104634 scopus 로고    scopus 로고
    • Taxon sampling and the accuracy of phylogenetic analyses
    • Heath TA, Hedtke SM, Hillis DM. 2008. Taxon sampling and the accuracy of phylogenetic analyses. J Syst Evol. 46:239-257.
    • (2008) J Syst EVol. , vol.46 , pp. 239-257
    • Heath, T.A.1    Hedtke, S.M.2    Hillis, D.M.3
  • 25
    • 35148863240 scopus 로고    scopus 로고
    • Gene duplication and the adaptive evolution of a classic genetic switch
    • Hittinger CT, Carroll SB. 2007. Gene duplication and the adaptive evolution of a classic genetic switch. Nature 449:677-681.
    • (2007) Nature , vol.449 , pp. 677-681
    • Hittinger, C.T.1    Carroll, S.B.2
  • 26
    • 2942598149 scopus 로고    scopus 로고
    • PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation
    • Hornbeck PV, Chabra I, Kornhauser JM, Skrzypek E, Zhang B. 2004. PhosphoSite: a bioinformatics resource dedicated to physiological protein phosphorylation. Proteomics 4:1551-1561.
    • (2004) Proteomics , vol.4 , pp. 1551-1561
    • Hornbeck, P.V.1    Chabra, I.2    Kornhauser, J.M.3    Skrzypek, E.4    Zhang, B.5
  • 27
    • 75549087305 scopus 로고    scopus 로고
    • The evolution of gene duplications: Classifying and distinguishing between models
    • Innan H, Kondrashov F. 2010. The evolution of gene duplications: classifying and distinguishing between models. Nat Rev Genet. 11: 97-108.
    • (2010) Nat Rev Genet. , vol.11 , pp. 97-108
    • Innan, H.1    Kondrashov, F.2
  • 29
    • 84858402388 scopus 로고    scopus 로고
    • The effects of alignment error and alignment filtering on the sitewise detection of positive selection
    • Jordan G, Goldman N. 2012. The effects of alignment error and alignment filtering on the sitewise detection of positive selection. Mol Biol Evol. 29:1125-1139.
    • (2012) Mol Biol EVol. , vol.29 , pp. 1125-1139
    • Jordan, G.1    Goldman, N.2
  • 30
    • 78649231644 scopus 로고    scopus 로고
    • Origins, evolution, and phenotypic impact of new genes
    • Kaessmann H. 2010. Origins, evolution, and phenotypic impact of new genes. Genome Res. 20:1313-1326.
    • (2010) Genome Res. , vol.20 , pp. 1313-1326
    • Kaessmann, H.1
  • 31
    • 0035220937 scopus 로고    scopus 로고
    • A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
    • RESEARCH0010
    • Knight RD, Freeland SJ, Landweber LF. 2001. A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes. Genome Biol. 2:RESEARCH0010.
    • (2001) Genome Biol. , vol.2
    • Knight, R.D.1    Freeland, S.J.2    Landweber, L.F.3
  • 32
    • 0021277009 scopus 로고
    • A new method for calculating evolutionary substitution rates
    • Lanave C, Preparata G, Saccone C, Serio G. 1984. A new method for calculating evolutionary substitution rates. J Mol Evol. 20:86-93.
    • (1984) J Mol EVol. , vol.20 , pp. 86-93
    • Lanave, C.1    Preparata, G.2    Saccone, C.3    Serio, G.4
  • 33
    • 0030862060 scopus 로고    scopus 로고
    • Two new S-phase-specific genes from Saccharomyces cerevisiae
    • Le S, Davis C, Konopka JB, Sternglanz R. 1997. Two new S-phase-specific genes from Saccharomyces cerevisiae. Yeast 13:1029-1042.
    • (1997) Yeast , vol.13 , pp. 1029-1042
    • Le, S.1    Davis, C.2    Konopka, J.B.3    Sternglanz, R.4
  • 34
    • 77953191060 scopus 로고    scopus 로고
    • ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing
    • (13 co-authors)
    • Li G, Fullwood MJ, Xu H, et al. (13 co-authors). 2010. ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing. Genome Biol. 11:R22.
    • (2010) Genome Biol. , vol.11
    • Li, G.1    Fullwood, M.J.2    Xu, H.3
  • 35
    • 0042622240 scopus 로고    scopus 로고
    • GlobPlot: Exploring protein sequences for globularity and disorder
    • Linding R, Russell RB, Neduva V, Gibson TJ. 2003. GlobPlot: exploring protein sequences for globularity and disorder. Nucleic Acids Res. 31: 3701-3708.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3701-3708
    • Linding, R.1    Russell, R.B.2    Neduva, V.3    Gibson, T.J.4
  • 36
    • 84871212864 scopus 로고    scopus 로고
    • CAF-1-induced oligomerization of histones H3/H4 and mutually exclusive interactions with Asf1 guide H3/H4 transitions among histone chaperones and DNA
    • Liu WH, Roemer SC, Port AM, Churchill ME. 2012. CAF-1-induced oligomerization of histones H3/H4 and mutually exclusive interactions with Asf1 guide H3/H4 transitions among histone chaperones and DNA. Nucleic Acids Res. 40:11229-11239.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 11229-11239
    • Liu, W.H.1    Roemer, S.C.2    Port, A.M.3    Churchill, M.E.4
  • 37
    • 33749657892 scopus 로고    scopus 로고
    • PTMs on H3 variants before chromatin assembly potentiate their final epigenetic state
    • Loyola A, Bonaldi T, Roche D, Imhof A, Almouzni G. 2006. PTMs on H3 variants before chromatin assembly potentiate their final epigenetic state. Mol Cell. 24:309-316.
    • (2006) Mol Cell. , vol.24 , pp. 309-316
    • Loyola, A.1    Bonaldi, T.2    Roche, D.3    Imhof, A.4    Almouzni, G.5
  • 38
    • 46649121282 scopus 로고    scopus 로고
    • Crystal structures of fission yeast histone chaperone Asf1 complexed with the Hip1 B-domain or the Cac2 C terminus
    • Malay AD, Umehara T, Matsubara-Malay K, Padmanabhan B, Yokoyama S. 2008. Crystal structures of fission yeast histone chaperone Asf1 complexed with the Hip1 B-domain or the Cac2 C terminus. J Biol Chem. 283:14022-14031.
    • (2008) J Biol Chem. , vol.283 , pp. 14022-14031
    • Malay, A.D.1    Umehara, T.2    Matsubara-Malay, K.3    Padmanabhan, B.4    Yokoyama, S.5
  • 39
    • 49649114289 scopus 로고    scopus 로고
    • Escape from adaptive conflict after duplication in an anthocyanin pathway gene
    • Marais Des DL, Rausher MD. 2008. Escape from adaptive conflict after duplication in an anthocyanin pathway gene. Nature 454:762-765.
    • (2008) Nature , vol.454 , pp. 762-765
    • Marais Des, D.L.1    Rausher, M.D.2
  • 40
    • 0032476713 scopus 로고    scopus 로고
    • Recruitment of phosphorylated chromatin assembly factor 1 to chromatin after UV irradiation of human cells
    • Martini E, Roche DM, Marheineke K, Verreault A, Almouzni G. 1998. Recruitment of phosphorylated chromatin assembly factor 1 to chromatin after UV irradiation of human cells. J Cell Biol. 143: 563-575.
    • (1998) J Cell Biol. , vol.143 , pp. 563-575
    • Martini, E.1    Roche, D.M.2    Marheineke, K.3    Verreault, A.4    Almouzni, G.5
  • 41
    • 78651271261 scopus 로고    scopus 로고
    • The Gene Expression Barcode: Leveraging public data repositories to begin cataloging the human and murine transcriptomes
    • McCall MN, Uppal K, Jaffee HA, Zilliox MJ, Irizarry RA. 2010. The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes. Nucleic Acids Res. 39:D1011-D1015.
    • (2010) Nucleic Acids Res. , vol.39
    • McCall, M.N.1    Uppal, K.2    Jaffee, H.A.3    Zilliox, M.J.4    Irizarry, R.A.5
  • 42
    • 0036250827 scopus 로고    scopus 로고
    • Human Asf1 and CAF-1 interact and synergize in a repair-coupled nucleosome assembly pathway
    • Mello JA, Silljé HH, Roche DM, Kirschner DB, Nigg EA, Almouzni G. 2002. Human Asf1 and CAF-1 interact and synergize in a repair-coupled nucleosome assembly pathway. EMBO Rep. 3:329-334.
    • (2002) EMBO Rep. , vol.3 , pp. 329-334
    • Mello, J.A.1    Silljé, H.H.2    Roche, D.M.3    Kirschner, D.B.4    Nigg, E.A.5    Almouzni, G.6
  • 43
    • 20944440841 scopus 로고    scopus 로고
    • Structural basis for the interaction of Asf1 with histone H3 and its functional implications
    • (11 co-authors)
    • Mousson F, Lautrette A, Thuret JY, et al. (11 co-authors). 2005. Structural basis for the interaction of Asf1 with histone H3 and its functional implications. Proc Natl Acad Sci U S A. 102:5975-5980.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 5975-5980
    • Mousson, F.1    Lautrette, A.2    Thuret, J.Y.3
  • 44
    • 33947127598 scopus 로고    scopus 로고
    • The histone chaperone Asf1 at the crossroads of chromatin and DNA checkpoint pathways
    • Mousson F, Ochsenbein F, Mann C. 2007. The histone chaperone Asf1 at the crossroads of chromatin and DNA checkpoint pathways. Chromosoma 116:79-93.
    • (2007) Chromosoma , vol.116 , pp. 79-93
    • Mousson, F.1    Ochsenbein, F.2    Mann, C.3
  • 45
    • 77951972053 scopus 로고    scopus 로고
    • Genomicus: A database and a browser to study gene synteny in modern and ancestral genomes
    • Muffato M, Louis A, Poisnel CE, Roest Crollius H. 2010. Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes. Bioinformatics 26:1119-1121.
    • (2010) Bioinformatics , vol.26 , pp. 1119-1121
    • Muffato, M.1    Louis, A.2    Poisnel, C.E.3    Roest Crollius, H.4
  • 46
    • 33847226680 scopus 로고    scopus 로고
    • Structure and function of the histone chaperone CIA/ASF1 complexed with histones H3 and H4
    • Natsume R, Eitoku M, Akai Y, Sano N, Horikoshi M, Senda T. 2007. Structure and function of the histone chaperone CIA/ASF1 complexed with histones H3 and H4. Nature 446:338-341.
    • (2007) Nature , vol.446 , pp. 338-341
    • Natsume, R.1    Eitoku, M.2    Akai, Y.3    Sano, N.4    Horikoshi, M.5    Senda, T.6
  • 47
    • 0026326815 scopus 로고
    • The recruitment of crystallins: New functions precede gene duplication
    • Piatigorsky J, Wistow G. 1991. The recruitment of crystallins: new functions precede gene duplication. Science 252:1078-1079.
    • (1991) Science , vol.252 , pp. 1078-1079
    • Piatigorsky, J.1    Wistow, G.2
  • 48
    • 77949513725 scopus 로고    scopus 로고
    • Phosphorylation-mediated control of histone chaperone ASF1 levels by Tousled-like kinases
    • Pilyugin M, Demmers J, Verrijzer CP, Karch F, Moshkin YM. 2009. Phosphorylation-mediated control of histone chaperone ASF1 levels by Tousled-like kinases. PLoS One 4:e8328.
    • (2009) PLoS One , vol.4
    • Pilyugin, M.1    Demmers, J.2    Verrijzer, C.P.3    Karch, F.4    Moshkin, Y.M.5
  • 49
    • 68049133064 scopus 로고    scopus 로고
    • Selection of models of DNA evolution with jModelTest
    • Posada D. 2008. Selection of models of DNA evolution with jModelTest. Methods Mol Biol. 537:93-112.
    • (2008) Methods Mol Biol. , vol.537 , pp. 93-112
    • Posada, D.1
  • 51
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 52
    • 77952994784 scopus 로고    scopus 로고
    • Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types
    • Ryba T, Hiratani I, Lu J, Itoh M, Kulik M, Zhang J, Schulz TC, Robins AJ, Dalton S, Gilbert DM. 2010. Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types. Genome Res. 20:761-770.
    • (2010) Genome Res. , vol.20 , pp. 761-770
    • Ryba, T.1    Hiratani, I.2    Lu, J.3    Itoh, M.4    Kulik, M.5    Zhang, J.6    Schulz, T.C.7    Robins, A.J.8    Dalton, S.9    Gilbert, D.M.10
  • 53
    • 67649807765 scopus 로고    scopus 로고
    • Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication
    • Sato Y, Hashiguchi Y, Nishida M. 2009. Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication. BMC Evol Biol. 9:127.
    • (2009) BMC Evol Biol. , vol.9 , pp. 127
    • Sato, Y.1    Hashiguchi, Y.2    Nishida, M.3
  • 54
    • 84865248380 scopus 로고    scopus 로고
    • Chromatin organization is a major influence on regional mutation rates in human cancer cells
    • Schuster-Böckler B, Lehner B. 2012. Chromatin organization is a major influence on regional mutation rates in human cancer cells. Nature 488:504-507.
    • (2012) Nature , vol.488 , pp. 504-507
    • Schuster-Böckler, B.1    Lehner, B.2
  • 55
    • 0035799281 scopus 로고    scopus 로고
    • Yeast histone deposition protein Asf1p requires Hir proteins and PCNA for heterochromatic silencing
    • Sharp JA, Fouts ET, Krawitz DC, Kaufman PD. 2001. Yeast histone deposition protein Asf1p requires Hir proteins and PCNA for heterochromatic silencing. Curr Biol. 11:463-473.
    • (2001) Curr Biol. , vol.11 , pp. 463-473
    • Sharp, J.A.1    Fouts, E.T.2    Krawitz, D.C.3    Kaufman, P.D.4
  • 56
    • 0035838432 scopus 로고    scopus 로고
    • Identification of human Asf1 chromatin assembly factors as substrates of Tousled-like kinases
    • Silljé HH, Nigg EA. 2001. Identification of human Asf1 chromatin assembly factors as substrates of Tousled-like kinases. Curr Biol. 11: 1068-1073.
    • (2001) Curr Biol. , vol.11 , pp. 1068-1073
    • Silljé, H.H.1    Nigg, E.A.2
  • 58
    • 0742304304 scopus 로고    scopus 로고
    • Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis
    • Tagami H, Ray Gallet D, Almouzni G, Nakatani Y. 2004. Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis. Cell 116:51-61.
    • (2004) Cell , vol.116 , pp. 51-61
    • Tagami, H.1    Ray Gallet, D.2    Almouzni, G.3    Nakatani, Y.4
  • 59
    • 25144465002 scopus 로고    scopus 로고
    • Functional conservation and specialization among eukaryotic anti-silencing function 1 histone chaperones
    • Tamburini BA, Carson JJ, Adkins MW, Tyler JK. 2005. Functional conservation and specialization among eukaryotic anti-silencing function 1 histone chaperones. Eukaryot Cell. 4:1583-1590.
    • (2005) Eukaryot Cell. , vol.4 , pp. 1583-1590
    • Tamburini, B.A.1    Carson, J.J.2    Adkins, M.W.3    Tyler, J.K.4
  • 62
    • 0042817937 scopus 로고    scopus 로고
    • Transcription initiation factor IID-interactive histone chaperone CIA-II implicated in mammalian spermatogenesis
    • Umehara T, Horikoshi M. 2003. Transcription initiation factor IID-interactive histone chaperone CIA-II implicated in mammalian spermatogenesis. J Biol Chem. 278:35660-35667.
    • (2003) J Biol Chem. , vol.278 , pp. 35660-35667
    • Umehara, T.1    Horikoshi, M.2
  • 64
    • 59949096873 scopus 로고    scopus 로고
    • EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
    • Vilella AJ, Severin J, Ureta-Vidal A, Heng L, Durbin R, Birney E. 2009. EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates. Genome Res. 19:327-335.
    • (2009) Genome Res. , vol.19 , pp. 327-335
    • Vilella, A.J.1    Severin, J.2    Ureta-Vidal, A.3    Heng, L.4    Durbin, R.5    Birney, E.6
  • 65
  • 68
    • 78650754693 scopus 로고    scopus 로고
    • Asf1/HIRA facilitate global histone deacetylation and associate with HP1 to promote nucleosome occupancy at heterochromatic loci
    • Yamane K, Mizuguchi T, Cui B, Zofall M, Noma K, Grewal SI. 2011. Asf1/HIRA facilitate global histone deacetylation and associate with HP1 to promote nucleosome occupancy at heterochromatic loci. Mol Cell. 41:56-66.
    • (2011) Mol Cell. , vol.41 , pp. 56-66
    • Yamane, K.1    Mizuguchi, T.2    Cui, B.3    Zofall, M.4    Noma, K.5    Grewal, S.I.6
  • 69
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591.
    • (2007) Mol Biol EVol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 70
    • 79952136825 scopus 로고    scopus 로고
    • Statistical properties of the branch-site test of positive selection
    • Yang Z, dos Reis M. 2011. Statistical properties of the branch-site test of positive selection. Mol Biol Evol. 28:1217-1228.
    • (2011) Mol Biol EVol. , vol.28 , pp. 1217-1228
    • Yang, Z.1    Dos Reis, M.2
  • 71
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical Bayes inference of amino acid sites under positive selection
    • Yang Z, Wong WS, Nielsen R. 2005. Bayes empirical Bayes inference of amino acid sites under positive selection. Mol Biol Evol. 22:1107-1118.
    • (2005) Mol Biol EVol. , vol.22 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.2    Nielsen, R.3
  • 72
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • Zhang J, Nielsen R, Yang Z. 2005. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol. 22:2472-2479.
    • (2005) Mol Biol EVol. , vol.22 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3
  • 73
    • 19944427674 scopus 로고    scopus 로고
    • Formation of MacroH2A-containing senescence-associated heterochromatin foci and senescence driven by ASF1a and HIRA
    • (14 co-authors)
    • Zhang R, Poustovoitov MV, Ye X, et al. (14 co-authors). 2005. Formation of MacroH2A-containing senescence-associated heterochromatin foci and senescence driven by ASF1a and HIRA. Dev Cell. 8:19-30.
    • (2005) Dev Cell. , vol.8 , pp. 19-30
    • Zhang, R.1    Poustovoitov, M.V.2    Ye, X.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.