메뉴 건너뛰기




Volumn 102-103, Issue , 1998, Pages 383-391

Directional mutational pressure affects the amino acid composition and hydrophobicity of proteins in bacteria

Author keywords

Amino acid composition; Directional mutational pressure; Genomic GC content; Hydrophobicity; Phylogeny

Indexed keywords

AMINO ACID COMPOSITION; BACTERIAL GENETICS; BACTERIUM; GENOME ANALYSIS; HYDROPHOBICITY; MOLECULAR EVOLUTION; MUTATION; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROTEIN;

EID: 7344256125     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1023/a:1017028102013     Document Type: Article
Times cited : (79)

References (33)
  • 2
    • 0028301837 scopus 로고
    • Nucleotide composition as a driving force in the evolution of retroviruses
    • Bronson, E. C. & J. N. Anderson, 1994. Nucleotide composition as a driving force in the evolution of retroviruses. J. Mol. Evol. 38: 506-532.
    • (1994) J. Mol. Evol. , vol.38 , pp. 506-532
    • Bronson, E.C.1    Anderson, J.N.2
  • 3
    • 0031588694 scopus 로고    scopus 로고
    • Relation between am ino acid composition and cellular location of proteins
    • Cedano, J., A. Patrick, J. Perez-Pons & E. Querol. 1997. Relation between am ino acid composition and cellular location of proteins. J. Mol. Biol. 266: 594-600.
    • (1997) J. Mol. Biol. , vol.266 , pp. 594-600
    • Cedano, J.1    Patrick, A.2    Perez-Pons, J.3    Querol, E.4
  • 4
    • 0027461794 scopus 로고
    • Relationship between G+C in silent sites of codons and amino acid compositions of human proteins
    • Collins, D.W. & T.H. Jukes, 1993. Relationship between G+C in silent sites of codons and amino acid compositions of human proteins. J. Mol. Evol. 36: 201-203.
    • (1993) J. Mol. Evol. , vol.36 , pp. 201-203
    • Collins, D.W.1    Jukes, T.H.2
  • 6
    • 0025775913 scopus 로고
    • Correlations between the compositional properties of human genes, codon usage and amino acid composition of proteins
    • D'Onofrio, G., D. Mouchiroud, B. Aissani, C. Gautier & G. Bernardi, 1991. Correlations between the compositional properties of human genes, codon usage and amino acid composition of proteins. J. Mol. Evol. 32: 504-510.
    • (1991) J. Mol. Evol. , vol.32 , pp. 504-510
    • D'Onofrio, G.1    Mouchiroud, D.2    Aissani, B.3    Gautier, C.4    Bernardi, G.5
  • 7
    • 0030023247 scopus 로고    scopus 로고
    • Determining divergence times of the major kindoms of living organisms with a protein clock
    • Doolittle, R.F., D.-F Feng, S. Tsang, G. Cho & E. Little, 1996. Determining divergence times of the major kindoms of living organisms with a protein clock. Science 271: 470-477.
    • (1996) Science , vol.271 , pp. 470-477
    • Doolittle, R.F.1    Feng, D.-F.2    Tsang, S.3    Cho, G.4    Little, E.5
  • 8
    • 0029610851 scopus 로고
    • The RecA proteins as am odel molecule for molecular systematic studies of bacteria: Comparison of trees of RecAs and 16S rRNAs from the same species
    • Eisen, J.A., 1995. The RecA proteins as am odel molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species. J. Mol. Evol. 41: 1105-1123.
    • (1995) J. Mol. Evol. , vol.41 , pp. 1105-1123
    • Eisen, J.A.1
  • 9
    • 0022203256 scopus 로고
    • Phylogenies and the comparative method
    • Felsenstein, J., 1985. Phylogenies and the comparative method. American Naturalist. 125: 1-15.
    • (1985) American Naturalist. , vol.125 , pp. 1-15
    • Felsenstein, J.1
  • 10
    • 0017713284 scopus 로고
    • Phylogenies constrained by the crossover process as illustrated by human hemoglobines and athirte en cycle, eleven-amino-acid repeat in human apolipoprotein A-1
    • Fitch, W.M., 1977. Phylogenies constrained by the crossover process as illustrated by human hemoglobines and athirte en cycle, eleven-amino-acid repeat in human apolipoprotein A-1. Genetics 86: 623-644.
    • (1977) Genetics , vol.86 , pp. 623-644
    • Fitch, W.M.1
  • 11
    • 0003024147 scopus 로고
    • Comparisons between taxa and adpative Trends: Problems of methodology
    • ed. King's College Sociobiology gioup, Cambridge University Press
    • Harvey, P.H. & G.M. Mace, 1982. Comparisons between taxa and adpative Trends: problems of methodology. Current Problems in Sociobiology (ed. King's College Sociobiology gioup), pp.343-361. Cambridge University Press.
    • (1982) Current Problems in Sociobiology , pp. 343-361
    • Harvey, P.H.1    Mace, G.M.2
  • 13
    • 0027466539 scopus 로고
    • Early branchings in the evolution of eukaryotes: Ancient divergence of entamoeba that lacks mitochondria revealed by protein sequence data
    • Hasegawa, M., T. Hashimota, J. Adachi, N. Iwabe & T. Miyata, 1993. Early branchings in the evolution of eukaryotes: ancient divergence of entamoeba that lacks mitochondria revealed by protein sequence data. J. Mol. Evol. 36: 380-388.
    • (1993) J. Mol. Evol. , vol.36 , pp. 380-388
    • Hasegawa, M.1    Hashimota, T.2    Adachi, J.3    Iwabe, N.4    Miyata, T.5
  • 14
    • 0022881350 scopus 로고
    • Silent nucleotide substitutions and G+C contents of some mitochondrial and bacterial genes
    • Jukes T.H. & V. Bhushan, 1986. Silent nucleotide substitutions and G+C contents of some mitochondrial and bacterial genes. J. Mol. Evol. 24: 39-44.
    • (1986) J. Mol. Evol. , vol.24 , pp. 39-44
    • Jukes, T.H.1    Bhushan, V.2
  • 16
    • 0014421064 scopus 로고
    • Evolutionary rate at the molecular level
    • Kimura, M., 1968. Evolutionary rate at the molecular level. Nature. 217: 624-626.
    • (1968) Nature. , vol.217 , pp. 624-626
    • Kimura, M.1
  • 18
    • 0014680905 scopus 로고
    • Non-Darwinian evolution
    • King, J.L. & T.H. Jukes, 1969. Non-Darwinian evolution. Science 164: 788-798.
    • (1969) Science , vol.164 , pp. 788-798
    • King, J.L.1    Jukes, T.H.2
  • 19
    • 0023873851 scopus 로고
    • Molecular cloning and sequence determination of the tuf gene coding for the elongation factor Tu of Thermos thermophilus
    • Kushiro, A., M. Shimizu & K. I. Tomita, 1987. Molecular cloning and sequence determination of the tuf gene coding for the elongation factor Tu of Thermos thermophilus. Eur. J. Biochem. 170: 93-98.
    • (1987) Eur. J. Biochem. , vol.170 , pp. 93-98
    • Kushiro, A.1    Shimizu, M.2    Tomita, K.I.3
  • 20
    • 0028361182 scopus 로고
    • Recovering evolutionary Trees under amore realistic model of sequence evolution
    • Lockhart, P.J., M.A. Steel, M.D. Hendy & D. Penny, 1994. Recovering evolutionary Trees under amore realistic model of sequence evolution. Mol. Biol. Evol. 11: 605-612.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 605-612
    • Lockhart, P.J.1    Steel, M.A.2    Hendy, M.D.3    Penny, D.4
  • 21
    • 0029866448 scopus 로고    scopus 로고
    • Accelerated evolution and Muller's rachet in endosymbiotic bacteria
    • Moran, N.A., 1996. Accelerated evolution and Muller's rachet in endosymbiotic bacteria. Proc. Natl. Acad. Sci. USA. 93: 2873-2878.
    • (1996) Proc. Natl. Acad. Sci. USA. , vol.93 , pp. 2873-2878
    • Moran, N.A.1
  • 22
    • 0013596021 scopus 로고
    • The guanine and cytosine content of genomic DNA and bacterial evolution
    • Muto, A. & S. Osawa, 1987. The guanine and cytosine content of genomic DNA and bacterial evolution. Proc. Natl. Acad. Sci. USA. 84: 166-169.
    • (1987) Proc. Natl. Acad. Sci. USA. , vol.84 , pp. 166-169
    • Muto, A.1    Osawa, S.2
  • 23
    • 0028239038 scopus 로고
    • Discrimination of intracellular and extracellular proteins using amino acid compositions and residue-pair frequencies
    • Nakashima, H. & K. Nishikawa, 1994. Discrimination of intracellular and extracellular proteins using amino acid compositions and residue-pair frequencies. J. Mol. Biol. 238: 54-61.
    • (1994) J. Mol. Biol. , vol.238 , pp. 54-61
    • Nakashima, H.1    Nishikawa, K.2
  • 25
    • 0015722319 scopus 로고
    • Slightly deleterious mutant substitutions in evolution
    • Ohta, T., 1973. Slightly deleterious mutant substitutions in evolution. Nature 246: 96-98.
    • (1973) Nature , vol.246 , pp. 96-98
    • Ohta, T.1
  • 26
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & M. Nei, 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 27
    • 0026326782 scopus 로고
    • Evidence for selective evolution in codon usage in conserved amino acid segments of hum an alphaherpesvirus proteins
    • Schachtel, G.A., P. Bucher, E. Mocarski, B.E. Blaisdel & S. Karlin, 1991. Evidence for selective evolution in codon usage in conserved amino acid segments of hum an alphaherpesvirus proteins. J. Mol. Evol. 33: 483-494.
    • (1991) J. Mol. Evol. , vol.33 , pp. 483-494
    • Schachtel, G.A.1    Bucher, P.2    Mocarski, E.3    Blaisdel, B.E.4    Karlin, S.5
  • 29
    • 73049156042 scopus 로고
    • Compositional correlation between deoxyribonucleic acid and protein
    • Sueoka, N., 1961. Compositional correlation between deoxyribonucleic acid and protein. Cold Spring Harbor Symp. Quant. Biol. 26: 35-43.
    • (1961) Cold Spring Harbor Symp. Quant. Biol. , vol.26 , pp. 35-43
    • Sueoka, N.1
  • 30
    • 3643052747 scopus 로고
    • On the genetic basis of variation and heterogeneity of DNA base composition
    • Sueoka, N., 1962. On the genetic basis of variation and heterogeneity of DNA base composition. Proc. Natl. Acad. Sci. USA. 48: 582-592.
    • (1962) Proc. Natl. Acad. Sci. USA. , vol.48 , pp. 582-592
    • Sueoka, N.1
  • 31
    • 0023991945 scopus 로고
    • Directional mutation presure and neutral molecular evolution
    • Sueoka, N., 1988. Directional mutation presure and neutral molecular evolution. Proc. Natl. Acad. Sci. USA. 85: 2653-2657.
    • (1988) Proc. Natl. Acad. Sci. USA. , vol.85 , pp. 2653-2657
    • Sueoka, N.1
  • 32
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C.R., 1987. Bacterial evolution. Microbiol. Rev. 51: 221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 33
    • 0026636320 scopus 로고
    • A correlation-coefficient method to predicting protein structural classes from amino acid compositions
    • Zhang, Ch. & K., Chou, 1992. A correlation-coefficient method to predicting protein structural classes from amino acid compositions. Eur. J. Biochem. 207: 429-433.
    • (1992) Eur. J. Biochem. , vol.207 , pp. 429-433
    • Zhang, Ch.1    Chou, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.